Strain Fitness in Serratia liquefaciens MT49 around IAI46_14900

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14885 and IAI46_14890 are separated by 99 nucleotidesIAI46_14890 and IAI46_14895 are separated by 163 nucleotidesIAI46_14895 and IAI46_14900 are separated by 42 nucleotidesIAI46_14900 and IAI46_14905 are separated by 200 nucleotidesIAI46_14905 and IAI46_14910 are separated by 457 nucleotides IAI46_14885: IAI46_14885 - YebO family protein, at 3,149,739 to 3,150,011 _14885 IAI46_14890: IAI46_14890 - PhoP/PhoQ regulator MgrB, at 3,150,111 to 3,150,269 _14890 IAI46_14895: IAI46_14895 - hypothetical protein, at 3,150,433 to 3,150,666 _14895 IAI46_14900: IAI46_14900 - DUF2766 domain-containing protein, at 3,150,709 to 3,150,948 _14900 IAI46_14905: IAI46_14905 - hypothetical protein, at 3,151,149 to 3,151,361 _14905 IAI46_14910: IAI46_14910 - helix-turn-helix domain-containing protein, at 3,151,819 to 3,152,205 _14910 Position (kb) 3150 3151Strain fitness (log2 ratio) -1 0 1 2at 3149.754 kb on - strandat 3150.022 kb on - strandat 3150.025 kb on + strandat 3150.025 kb on + strandat 3150.050 kb on + strandat 3150.051 kb on - strandat 3150.051 kb on - strandat 3150.094 kb on - strandat 3150.176 kb on - strand, within IAI46_14890at 3150.176 kb on - strand, within IAI46_14890at 3150.179 kb on + strand, within IAI46_14890at 3150.180 kb on - strand, within IAI46_14890at 3150.229 kb on - strand, within IAI46_14890at 3150.298 kb on + strandat 3150.312 kb on + strandat 3150.313 kb on - strandat 3150.398 kb on + strandat 3150.399 kb on - strandat 3150.400 kb on + strandat 3150.419 kb on - strandat 3150.431 kb on + strandat 3150.431 kb on + strandat 3150.438 kb on + strandat 3150.558 kb on + strand, within IAI46_14895at 3150.948 kb on + strandat 3150.949 kb on - strandat 3150.952 kb on + strandat 3150.952 kb on + strandat 3150.986 kb on - strandat 3151.183 kb on + strand, within IAI46_14905at 3151.184 kb on - strand, within IAI46_14905at 3151.184 kb on - strand, within IAI46_14905at 3151.342 kb on + strandat 3151.359 kb on + strandat 3151.493 kb on - strandat 3151.781 kb on - strandat 3151.782 kb on + strandat 3151.793 kb on + strandat 3151.797 kb on + strandat 3151.797 kb on + strandat 3151.797 kb on + strandat 3151.797 kb on + strandat 3151.798 kb on - strandat 3151.798 kb on - strandat 3151.824 kb on - strandat 3151.860 kb on + strand, within IAI46_14910at 3151.915 kb on + strand, within IAI46_14910at 3151.925 kb on - strand, within IAI46_14910

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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3,149,754 - +1.2
3,150,022 - -0.1
3,150,025 + -0.3
3,150,025 + -0.1
3,150,050 + +0.4
3,150,051 - +1.3
3,150,051 - +0.7
3,150,094 - -1.7
3,150,176 - IAI46_14890 0.41 +0.7
3,150,176 - IAI46_14890 0.41 +1.4
3,150,179 + IAI46_14890 0.43 -0.3
3,150,180 - IAI46_14890 0.43 -0.9
3,150,229 - IAI46_14890 0.74 +0.5
3,150,298 + +1.4
3,150,312 + -0.7
3,150,313 - +0.7
3,150,398 + +0.4
3,150,399 - +0.3
3,150,400 + -0.6
3,150,419 - -0.3
3,150,431 + -1.3
3,150,431 + -0.4
3,150,438 + +1.3
3,150,558 + IAI46_14895 0.53 -1.1
3,150,948 + -1.5
3,150,949 - -0.2
3,150,952 + -0.5
3,150,952 + +0.3
3,150,986 - +0.7
3,151,183 + IAI46_14905 0.16 +0.8
3,151,184 - IAI46_14905 0.16 -0.9
3,151,184 - IAI46_14905 0.16 -0.5
3,151,342 + +0.7
3,151,359 + +0.7
3,151,493 - +0.1
3,151,781 - +1.2
3,151,782 + +0.3
3,151,793 + -0.5
3,151,797 + +1.1
3,151,797 + -0.7
3,151,797 + +1.1
3,151,797 + +1.8
3,151,798 - +2.1
3,151,798 - +0.5
3,151,824 - +1.5
3,151,860 + IAI46_14910 0.11 -0.0
3,151,915 + IAI46_14910 0.25 +0.7
3,151,925 - IAI46_14910 0.27 +1.8

Or see this region's nucleotide sequence