Strain Fitness in Serratia liquefaciens MT49 around IAI46_13290

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13285 and IAI46_13290 are separated by 28 nucleotidesIAI46_13290 and IAI46_13295 are separated by 126 nucleotidesIAI46_13295 and IAI46_13300 are separated by 73 nucleotides IAI46_13285: IAI46_13285 - amino acid permease, at 2,834,146 to 2,835,537 _13285 IAI46_13290: IAI46_13290 - hypothetical protein, at 2,835,566 to 2,835,982 _13290 IAI46_13295: IAI46_13295 - dihydromonapterin reductase, at 2,836,109 to 2,836,831 _13295 IAI46_13300: IAI46_13300 - two-component system response regulator RstA, at 2,836,905 to 2,837,630 _13300 Position (kb) 2835 2836Strain fitness (log2 ratio) -2 -1 0 1 2at 2834.610 kb on + strand, within IAI46_13285at 2834.610 kb on + strand, within IAI46_13285at 2834.690 kb on + strand, within IAI46_13285at 2834.847 kb on + strand, within IAI46_13285at 2834.848 kb on - strand, within IAI46_13285at 2834.883 kb on - strand, within IAI46_13285at 2834.973 kb on + strand, within IAI46_13285at 2835.358 kb on + strand, within IAI46_13285at 2835.358 kb on + strand, within IAI46_13285at 2835.359 kb on - strand, within IAI46_13285at 2835.401 kb on - strandat 2835.423 kb on + strandat 2835.427 kb on + strandat 2835.572 kb on - strandat 2835.622 kb on + strand, within IAI46_13290at 2835.622 kb on + strand, within IAI46_13290at 2835.623 kb on - strand, within IAI46_13290at 2835.671 kb on - strand, within IAI46_13290at 2835.691 kb on + strand, within IAI46_13290at 2835.843 kb on - strand, within IAI46_13290at 2835.870 kb on + strand, within IAI46_13290at 2835.881 kb on + strand, within IAI46_13290at 2835.922 kb on - strand, within IAI46_13290at 2835.973 kb on + strandat 2835.974 kb on - strandat 2836.005 kb on - strandat 2836.007 kb on + strandat 2836.008 kb on - strandat 2836.008 kb on - strandat 2836.008 kb on - strandat 2836.056 kb on + strandat 2836.067 kb on - strandat 2836.230 kb on - strand, within IAI46_13295at 2836.304 kb on + strand, within IAI46_13295at 2836.304 kb on + strand, within IAI46_13295at 2836.449 kb on - strand, within IAI46_13295at 2836.449 kb on - strand, within IAI46_13295at 2836.508 kb on - strand, within IAI46_13295at 2836.526 kb on + strand, within IAI46_13295at 2836.527 kb on - strand, within IAI46_13295at 2836.527 kb on - strand, within IAI46_13295at 2836.562 kb on + strand, within IAI46_13295at 2836.591 kb on + strand, within IAI46_13295at 2836.591 kb on + strand, within IAI46_13295at 2836.592 kb on - strand, within IAI46_13295at 2836.661 kb on - strand, within IAI46_13295at 2836.910 kb on + strandat 2836.979 kb on + strand, within IAI46_13300

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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2,834,610 + IAI46_13285 0.33 +0.3
2,834,610 + IAI46_13285 0.33 -1.2
2,834,690 + IAI46_13285 0.39 -0.4
2,834,847 + IAI46_13285 0.50 +0.3
2,834,848 - IAI46_13285 0.50 +0.4
2,834,883 - IAI46_13285 0.53 -2.2
2,834,973 + IAI46_13285 0.59 +0.5
2,835,358 + IAI46_13285 0.87 +0.6
2,835,358 + IAI46_13285 0.87 +0.0
2,835,359 - IAI46_13285 0.87 +0.9
2,835,401 - +0.4
2,835,423 + +0.4
2,835,427 + +0.3
2,835,572 - +1.3
2,835,622 + IAI46_13290 0.13 -0.7
2,835,622 + IAI46_13290 0.13 -0.6
2,835,623 - IAI46_13290 0.14 +1.2
2,835,671 - IAI46_13290 0.25 -1.6
2,835,691 + IAI46_13290 0.30 -0.6
2,835,843 - IAI46_13290 0.66 +0.0
2,835,870 + IAI46_13290 0.73 +1.6
2,835,881 + IAI46_13290 0.76 -1.1
2,835,922 - IAI46_13290 0.85 +1.0
2,835,973 + -2.6
2,835,974 - +0.2
2,836,005 - +1.2
2,836,007 + +1.0
2,836,008 - +0.9
2,836,008 - -0.2
2,836,008 - -0.3
2,836,056 + +0.1
2,836,067 - -0.9
2,836,230 - IAI46_13295 0.17 +1.3
2,836,304 + IAI46_13295 0.27 +0.9
2,836,304 + IAI46_13295 0.27 +0.8
2,836,449 - IAI46_13295 0.47 +0.0
2,836,449 - IAI46_13295 0.47 +1.0
2,836,508 - IAI46_13295 0.55 +0.7
2,836,526 + IAI46_13295 0.58 -1.2
2,836,527 - IAI46_13295 0.58 +0.7
2,836,527 - IAI46_13295 0.58 +0.6
2,836,562 + IAI46_13295 0.63 +1.3
2,836,591 + IAI46_13295 0.67 +0.2
2,836,591 + IAI46_13295 0.67 -1.7
2,836,592 - IAI46_13295 0.67 +1.4
2,836,661 - IAI46_13295 0.76 -0.3
2,836,910 + -1.0
2,836,979 + IAI46_13300 0.10 +1.8

Or see this region's nucleotide sequence