Strain Fitness in Serratia liquefaciens MT49 around IAI46_12540

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12530 and IAI46_12535 overlap by 1 nucleotidesIAI46_12535 and IAI46_12540 are separated by 87 nucleotidesIAI46_12540 and IAI46_12545 are separated by 260 nucleotidesIAI46_12545 and IAI46_12550 are separated by 17 nucleotides IAI46_12530: IAI46_12530 - proton-conducting membrane transporter, at 2,663,727 to 2,665,595 _12530 IAI46_12535: IAI46_12535 - 4Fe-4S dicluster domain-containing protein, at 2,665,595 to 2,666,209 _12535 IAI46_12540: IAI46_12540 - formate hydrogenlyase regulator HycA, at 2,666,297 to 2,666,764 _12540 IAI46_12545: IAI46_12545 - hydrogenase maturation nickel metallochaperone HypA, at 2,667,025 to 2,667,369 _12545 IAI46_12550: IAI46_12550 - hydrogenase nickel incorporation protein HypB, at 2,667,387 to 2,668,181 _12550 Position (kb) 2666 2667Strain fitness (log2 ratio) -2 -1 0 1at 2665.745 kb on - strand, within IAI46_12535at 2666.108 kb on + strand, within IAI46_12535at 2666.161 kb on + strandat 2666.174 kb on - strandat 2666.397 kb on + strand, within IAI46_12540at 2666.409 kb on - strand, within IAI46_12540at 2666.591 kb on + strand, within IAI46_12540at 2666.635 kb on + strand, within IAI46_12540at 2666.682 kb on + strand, within IAI46_12540at 2666.756 kb on - strandat 2666.756 kb on - strandat 2666.756 kb on - strandat 2666.922 kb on + strandat 2667.062 kb on + strand, within IAI46_12545at 2667.176 kb on + strand, within IAI46_12545at 2667.756 kb on - strand, within IAI46_12550

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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2,665,745 - IAI46_12535 0.24 +1.5
2,666,108 + IAI46_12535 0.83 -0.7
2,666,161 + -0.8
2,666,174 - +1.0
2,666,397 + IAI46_12540 0.21 -0.8
2,666,409 - IAI46_12540 0.24 -1.3
2,666,591 + IAI46_12540 0.63 +1.3
2,666,635 + IAI46_12540 0.72 +0.1
2,666,682 + IAI46_12540 0.82 -0.4
2,666,756 - -0.6
2,666,756 - -1.3
2,666,756 - -2.3
2,666,922 + -0.1
2,667,062 + IAI46_12545 0.11 +0.7
2,667,176 + IAI46_12545 0.44 +1.3
2,667,756 - IAI46_12550 0.46 +0.0

Or see this region's nucleotide sequence