Strain Fitness in Serratia liquefaciens MT49 around IAI46_12410

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12405 and IAI46_12410 are separated by 400 nucleotidesIAI46_12410 and IAI46_12415 are separated by 2 nucleotides IAI46_12405: IAI46_12405 - diaminobutyrate--2-oxoglutarate transaminase, at 2,634,800 to 2,636,191 _12405 IAI46_12410: IAI46_12410 - SDR family NAD(P)-dependent oxidoreductase, at 2,636,592 to 2,637,305 _12410 IAI46_12415: IAI46_12415 - GMC family oxidoreductase N-terminal domain-containing protein, at 2,637,308 to 2,638,954 _12415 Position (kb) 2636 2637 2638Strain fitness (log2 ratio) -2 -1 0 1 2at 2635.831 kb on - strand, within IAI46_12405at 2635.853 kb on + strand, within IAI46_12405at 2635.854 kb on - strand, within IAI46_12405at 2635.862 kb on + strand, within IAI46_12405at 2635.863 kb on - strand, within IAI46_12405at 2635.863 kb on - strand, within IAI46_12405at 2635.863 kb on - strand, within IAI46_12405at 2635.863 kb on - strand, within IAI46_12405at 2635.909 kb on + strand, within IAI46_12405at 2635.909 kb on + strand, within IAI46_12405at 2636.194 kb on + strandat 2636.203 kb on + strandat 2636.203 kb on + strandat 2636.282 kb on - strandat 2636.282 kb on - strandat 2636.282 kb on - strandat 2636.284 kb on - strandat 2636.534 kb on - strandat 2636.549 kb on + strandat 2636.593 kb on + strandat 2636.776 kb on + strand, within IAI46_12410at 2637.220 kb on - strand, within IAI46_12410at 2637.220 kb on - strand, within IAI46_12410at 2637.356 kb on - strandat 2637.544 kb on + strand, within IAI46_12415at 2637.772 kb on - strand, within IAI46_12415at 2637.982 kb on + strand, within IAI46_12415at 2637.982 kb on + strand, within IAI46_12415at 2637.983 kb on - strand, within IAI46_12415at 2638.215 kb on + strand, within IAI46_12415

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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2,635,831 - IAI46_12405 0.74 -0.2
2,635,853 + IAI46_12405 0.76 -0.3
2,635,854 - IAI46_12405 0.76 -2.3
2,635,862 + IAI46_12405 0.76 -1.1
2,635,863 - IAI46_12405 0.76 +1.5
2,635,863 - IAI46_12405 0.76 -1.1
2,635,863 - IAI46_12405 0.76 -0.2
2,635,863 - IAI46_12405 0.76 -0.9
2,635,909 + IAI46_12405 0.80 +0.9
2,635,909 + IAI46_12405 0.80 -0.8
2,636,194 + +1.5
2,636,203 + +0.3
2,636,203 + +0.9
2,636,282 - +0.9
2,636,282 - -1.4
2,636,282 - -1.0
2,636,284 - +1.1
2,636,534 - +1.8
2,636,549 + -0.3
2,636,593 + +0.1
2,636,776 + IAI46_12410 0.26 -1.1
2,637,220 - IAI46_12410 0.88 +0.2
2,637,220 - IAI46_12410 0.88 +0.7
2,637,356 - +1.4
2,637,544 + IAI46_12415 0.14 +0.3
2,637,772 - IAI46_12415 0.28 -0.2
2,637,982 + IAI46_12415 0.41 +1.2
2,637,982 + IAI46_12415 0.41 +0.8
2,637,983 - IAI46_12415 0.41 -1.1
2,638,215 + IAI46_12415 0.55 +0.5

Or see this region's nucleotide sequence