Strain Fitness in Serratia liquefaciens MT49 around IAI46_08480

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08475 and IAI46_08480 are separated by 174 nucleotidesIAI46_08480 and IAI46_08485 are separated by 192 nucleotides IAI46_08475: IAI46_08475 - hydroxylamine reductase, at 1,802,228 to 1,803,877 _08475 IAI46_08480: IAI46_08480 - lysine exporter LysO family protein, at 1,804,052 to 1,804,948 _08480 IAI46_08485: IAI46_08485 - ATP-dependent endonuclease, at 1,805,141 to 1,806,805 _08485 Position (kb) 1804 1805Strain fitness (log2 ratio) -2 -1 0 1 2at 1803.072 kb on + strand, within IAI46_08475at 1803.072 kb on + strand, within IAI46_08475at 1803.073 kb on - strand, within IAI46_08475at 1803.177 kb on - strand, within IAI46_08475at 1803.202 kb on - strand, within IAI46_08475at 1803.330 kb on + strand, within IAI46_08475at 1803.355 kb on - strand, within IAI46_08475at 1803.355 kb on - strand, within IAI46_08475at 1803.366 kb on - strand, within IAI46_08475at 1803.366 kb on - strand, within IAI46_08475at 1803.382 kb on + strand, within IAI46_08475at 1803.382 kb on + strand, within IAI46_08475at 1803.384 kb on + strand, within IAI46_08475at 1803.384 kb on + strand, within IAI46_08475at 1803.408 kb on + strand, within IAI46_08475at 1803.409 kb on - strand, within IAI46_08475at 1803.499 kb on + strand, within IAI46_08475at 1803.499 kb on + strand, within IAI46_08475at 1803.500 kb on - strand, within IAI46_08475at 1803.752 kb on + strandat 1803.752 kb on + strandat 1803.819 kb on + strandat 1803.819 kb on + strandat 1803.820 kb on - strandat 1803.820 kb on - strandat 1803.877 kb on + strandat 1803.878 kb on - strandat 1803.926 kb on + strandat 1803.926 kb on + strandat 1803.926 kb on + strandat 1803.927 kb on - strandat 1803.927 kb on - strandat 1804.014 kb on + strandat 1804.015 kb on - strandat 1804.015 kb on - strandat 1804.092 kb on - strandat 1804.152 kb on - strand, within IAI46_08480at 1804.218 kb on - strand, within IAI46_08480at 1804.333 kb on - strand, within IAI46_08480at 1804.459 kb on + strand, within IAI46_08480at 1804.460 kb on - strand, within IAI46_08480at 1804.530 kb on - strand, within IAI46_08480at 1804.639 kb on + strand, within IAI46_08480at 1804.640 kb on - strand, within IAI46_08480at 1804.640 kb on - strand, within IAI46_08480at 1804.693 kb on + strand, within IAI46_08480at 1804.770 kb on - strand, within IAI46_08480at 1804.780 kb on + strand, within IAI46_08480at 1804.781 kb on - strand, within IAI46_08480at 1804.836 kb on + strand, within IAI46_08480at 1804.890 kb on - strandat 1804.944 kb on + strandat 1804.944 kb on + strandat 1804.945 kb on - strandat 1804.945 kb on - strandat 1804.959 kb on - strandat 1805.156 kb on - strandat 1805.297 kb on + strandat 1805.362 kb on - strand, within IAI46_08485at 1805.374 kb on + strand, within IAI46_08485at 1805.375 kb on - strand, within IAI46_08485at 1805.566 kb on + strand, within IAI46_08485at 1805.566 kb on + strand, within IAI46_08485at 1805.567 kb on - strand, within IAI46_08485at 1805.567 kb on - strand, within IAI46_08485at 1805.727 kb on + strand, within IAI46_08485at 1805.801 kb on + strand, within IAI46_08485at 1805.801 kb on + strand, within IAI46_08485at 1805.802 kb on - strand, within IAI46_08485at 1805.903 kb on - strand, within IAI46_08485at 1805.927 kb on - strand, within IAI46_08485at 1805.939 kb on - strand, within IAI46_08485

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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1,803,072 + IAI46_08475 0.51 +1.1
1,803,072 + IAI46_08475 0.51 +0.1
1,803,073 - IAI46_08475 0.51 +1.7
1,803,177 - IAI46_08475 0.58 -0.8
1,803,202 - IAI46_08475 0.59 -0.4
1,803,330 + IAI46_08475 0.67 +0.9
1,803,355 - IAI46_08475 0.68 +0.2
1,803,355 - IAI46_08475 0.68 -0.9
1,803,366 - IAI46_08475 0.69 +0.5
1,803,366 - IAI46_08475 0.69 +0.7
1,803,382 + IAI46_08475 0.70 +0.4
1,803,382 + IAI46_08475 0.70 -0.1
1,803,384 + IAI46_08475 0.70 -0.1
1,803,384 + IAI46_08475 0.70 -0.1
1,803,408 + IAI46_08475 0.72 +0.2
1,803,409 - IAI46_08475 0.72 +0.5
1,803,499 + IAI46_08475 0.77 -0.8
1,803,499 + IAI46_08475 0.77 -0.9
1,803,500 - IAI46_08475 0.77 +1.8
1,803,752 + -1.2
1,803,752 + -1.8
1,803,819 + +0.1
1,803,819 + -0.7
1,803,820 - +0.9
1,803,820 - +0.3
1,803,877 + +0.4
1,803,878 - +0.8
1,803,926 + -0.1
1,803,926 + +1.0
1,803,926 + -0.4
1,803,927 - +0.5
1,803,927 - +0.2
1,804,014 + -0.7
1,804,015 - -0.2
1,804,015 - +0.6
1,804,092 - +0.8
1,804,152 - IAI46_08480 0.11 -1.4
1,804,218 - IAI46_08480 0.19 +0.9
1,804,333 - IAI46_08480 0.31 -0.9
1,804,459 + IAI46_08480 0.45 +0.5
1,804,460 - IAI46_08480 0.45 +0.5
1,804,530 - IAI46_08480 0.53 +0.3
1,804,639 + IAI46_08480 0.65 +0.1
1,804,640 - IAI46_08480 0.66 -1.1
1,804,640 - IAI46_08480 0.66 +0.0
1,804,693 + IAI46_08480 0.71 -0.4
1,804,770 - IAI46_08480 0.80 -0.2
1,804,780 + IAI46_08480 0.81 +0.1
1,804,781 - IAI46_08480 0.81 -0.2
1,804,836 + IAI46_08480 0.87 +0.2
1,804,890 - -1.5
1,804,944 + -0.6
1,804,944 + +0.5
1,804,945 - +0.2
1,804,945 - +0.4
1,804,959 - +0.8
1,805,156 - +0.0
1,805,297 + +0.1
1,805,362 - IAI46_08485 0.13 -0.7
1,805,374 + IAI46_08485 0.14 -0.5
1,805,375 - IAI46_08485 0.14 -0.9
1,805,566 + IAI46_08485 0.26 -0.3
1,805,566 + IAI46_08485 0.26 +1.1
1,805,567 - IAI46_08485 0.26 -1.1
1,805,567 - IAI46_08485 0.26 +1.4
1,805,727 + IAI46_08485 0.35 -1.2
1,805,801 + IAI46_08485 0.40 +0.9
1,805,801 + IAI46_08485 0.40 -0.7
1,805,802 - IAI46_08485 0.40 -0.8
1,805,903 - IAI46_08485 0.46 +0.1
1,805,927 - IAI46_08485 0.47 +0.7
1,805,939 - IAI46_08485 0.48 +0.1

Or see this region's nucleotide sequence