Strain Fitness in Serratia liquefaciens MT49 around IAI46_07555

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07545 and IAI46_07550 are separated by 393 nucleotidesIAI46_07550 and IAI46_07555 are separated by 61 nucleotidesIAI46_07555 and IAI46_07560 are separated by 145 nucleotides IAI46_07545: IAI46_07545 - DNA starvation/stationary phase protection protein Dps, at 1,594,891 to 1,595,394 _07545 IAI46_07550: IAI46_07550 - adenylate kinase, at 1,595,788 to 1,596,327 _07550 IAI46_07555: IAI46_07555 - YhcH/YjgK/YiaL family protein, at 1,596,389 to 1,596,856 _07555 IAI46_07560: IAI46_07560 - threonine/homoserine exporter RhtA, at 1,597,002 to 1,597,889 _07560 Position (kb) 1596 1597Strain fitness (log2 ratio) -1 0 1 2at 1595.389 kb on - strandat 1595.394 kb on + strandat 1595.394 kb on + strandat 1595.395 kb on - strandat 1595.401 kb on + strandat 1595.412 kb on + strandat 1595.443 kb on - strandat 1595.446 kb on + strandat 1595.448 kb on + strandat 1595.448 kb on + strandat 1595.448 kb on + strandat 1595.449 kb on - strandat 1595.485 kb on - strandat 1595.495 kb on + strandat 1595.563 kb on + strandat 1595.584 kb on + strandat 1595.743 kb on + strandat 1595.744 kb on - strandat 1595.759 kb on + strandat 1595.760 kb on - strandat 1595.846 kb on + strand, within IAI46_07550at 1595.871 kb on + strand, within IAI46_07550at 1595.913 kb on + strand, within IAI46_07550at 1595.992 kb on + strand, within IAI46_07550at 1596.013 kb on - strand, within IAI46_07550at 1596.045 kb on - strand, within IAI46_07550at 1596.045 kb on - strand, within IAI46_07550at 1596.050 kb on - strand, within IAI46_07550at 1596.064 kb on - strand, within IAI46_07550at 1596.064 kb on - strand, within IAI46_07550at 1596.304 kb on - strandat 1596.391 kb on - strandat 1596.405 kb on + strandat 1596.405 kb on + strandat 1596.406 kb on - strandat 1596.406 kb on - strandat 1596.448 kb on + strand, within IAI46_07555at 1596.449 kb on - strand, within IAI46_07555at 1596.449 kb on - strand, within IAI46_07555at 1596.449 kb on - strand, within IAI46_07555at 1596.488 kb on + strand, within IAI46_07555at 1596.489 kb on - strand, within IAI46_07555at 1596.495 kb on + strand, within IAI46_07555at 1596.495 kb on + strand, within IAI46_07555at 1596.495 kb on + strand, within IAI46_07555at 1596.495 kb on + strand, within IAI46_07555at 1596.496 kb on - strand, within IAI46_07555at 1596.496 kb on - strand, within IAI46_07555at 1596.496 kb on - strand, within IAI46_07555at 1596.496 kb on - strand, within IAI46_07555at 1596.533 kb on + strand, within IAI46_07555at 1596.533 kb on + strand, within IAI46_07555at 1596.533 kb on + strand, within IAI46_07555at 1596.539 kb on - strand, within IAI46_07555at 1596.551 kb on + strand, within IAI46_07555at 1596.551 kb on + strand, within IAI46_07555at 1596.551 kb on + strand, within IAI46_07555at 1596.551 kb on + strand, within IAI46_07555at 1596.551 kb on + strand, within IAI46_07555at 1596.552 kb on - strand, within IAI46_07555at 1596.552 kb on - strand, within IAI46_07555at 1596.570 kb on + strand, within IAI46_07555at 1596.606 kb on + strand, within IAI46_07555at 1596.607 kb on - strand, within IAI46_07555at 1596.635 kb on + strand, within IAI46_07555at 1596.636 kb on - strand, within IAI46_07555at 1596.652 kb on - strand, within IAI46_07555at 1596.652 kb on - strand, within IAI46_07555at 1596.826 kb on - strandat 1596.849 kb on + strandat 1596.850 kb on - strandat 1596.850 kb on - strandat 1596.882 kb on - strandat 1596.902 kb on + strandat 1596.903 kb on - strandat 1596.927 kb on + strandat 1596.928 kb on - strandat 1596.928 kb on - strandat 1596.928 kb on - strandat 1597.056 kb on - strandat 1597.217 kb on - strand, within IAI46_07560at 1597.238 kb on + strand, within IAI46_07560at 1597.239 kb on - strand, within IAI46_07560at 1597.239 kb on - strand, within IAI46_07560at 1597.266 kb on - strand, within IAI46_07560at 1597.392 kb on - strand, within IAI46_07560at 1597.392 kb on - strand, within IAI46_07560at 1597.392 kb on - strand, within IAI46_07560at 1597.397 kb on - strand, within IAI46_07560at 1597.619 kb on - strand, within IAI46_07560at 1597.627 kb on + strand, within IAI46_07560at 1597.628 kb on - strand, within IAI46_07560at 1597.654 kb on + strand, within IAI46_07560at 1597.654 kb on + strand, within IAI46_07560at 1597.655 kb on - strand, within IAI46_07560at 1597.712 kb on + strand, within IAI46_07560

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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1,595,389 - -0.0
1,595,394 + +0.8
1,595,394 + +0.2
1,595,395 - +0.2
1,595,401 + +0.4
1,595,412 + -1.0
1,595,443 - -0.0
1,595,446 + +0.3
1,595,448 + -0.0
1,595,448 + -1.1
1,595,448 + -0.0
1,595,449 - -0.2
1,595,485 - +0.4
1,595,495 + +1.4
1,595,563 + +0.1
1,595,584 + -1.2
1,595,743 + +0.3
1,595,744 - -0.8
1,595,759 + -1.3
1,595,760 - +1.2
1,595,846 + IAI46_07550 0.11 -0.3
1,595,871 + IAI46_07550 0.15 +0.5
1,595,913 + IAI46_07550 0.23 +1.3
1,595,992 + IAI46_07550 0.38 -0.0
1,596,013 - IAI46_07550 0.42 +0.5
1,596,045 - IAI46_07550 0.48 +2.4
1,596,045 - IAI46_07550 0.48 +1.7
1,596,050 - IAI46_07550 0.49 -0.4
1,596,064 - IAI46_07550 0.51 +1.3
1,596,064 - IAI46_07550 0.51 +0.1
1,596,304 - -0.1
1,596,391 - +0.5
1,596,405 + -0.1
1,596,405 + -0.1
1,596,406 - +1.7
1,596,406 - +0.4
1,596,448 + IAI46_07555 0.13 +1.1
1,596,449 - IAI46_07555 0.13 -1.1
1,596,449 - IAI46_07555 0.13 -0.6
1,596,449 - IAI46_07555 0.13 +0.3
1,596,488 + IAI46_07555 0.21 +0.6
1,596,489 - IAI46_07555 0.21 +0.4
1,596,495 + IAI46_07555 0.23 +0.6
1,596,495 + IAI46_07555 0.23 +0.3
1,596,495 + IAI46_07555 0.23 +0.5
1,596,495 + IAI46_07555 0.23 +0.6
1,596,496 - IAI46_07555 0.23 +0.5
1,596,496 - IAI46_07555 0.23 -0.8
1,596,496 - IAI46_07555 0.23 -0.4
1,596,496 - IAI46_07555 0.23 +1.0
1,596,533 + IAI46_07555 0.31 -0.1
1,596,533 + IAI46_07555 0.31 -0.2
1,596,533 + IAI46_07555 0.31 +0.3
1,596,539 - IAI46_07555 0.32 -0.9
1,596,551 + IAI46_07555 0.35 +0.1
1,596,551 + IAI46_07555 0.35 +0.7
1,596,551 + IAI46_07555 0.35 +0.6
1,596,551 + IAI46_07555 0.35 +0.2
1,596,551 + IAI46_07555 0.35 +0.9
1,596,552 - IAI46_07555 0.35 +0.1
1,596,552 - IAI46_07555 0.35 -0.8
1,596,570 + IAI46_07555 0.39 -0.2
1,596,606 + IAI46_07555 0.46 -0.4
1,596,607 - IAI46_07555 0.47 -0.9
1,596,635 + IAI46_07555 0.53 +0.7
1,596,636 - IAI46_07555 0.53 +0.9
1,596,652 - IAI46_07555 0.56 -0.6
1,596,652 - IAI46_07555 0.56 +0.5
1,596,826 - -1.1
1,596,849 + -0.1
1,596,850 - -0.4
1,596,850 - +0.0
1,596,882 - +0.0
1,596,902 + +1.8
1,596,903 - -0.4
1,596,927 + -1.0
1,596,928 - +0.4
1,596,928 - -0.7
1,596,928 - +0.8
1,597,056 - -0.3
1,597,217 - IAI46_07560 0.24 +0.7
1,597,238 + IAI46_07560 0.27 +0.6
1,597,239 - IAI46_07560 0.27 -1.5
1,597,239 - IAI46_07560 0.27 +2.2
1,597,266 - IAI46_07560 0.30 +0.7
1,597,392 - IAI46_07560 0.44 +0.8
1,597,392 - IAI46_07560 0.44 -1.2
1,597,392 - IAI46_07560 0.44 +1.1
1,597,397 - IAI46_07560 0.44 +0.3
1,597,619 - IAI46_07560 0.69 +0.6
1,597,627 + IAI46_07560 0.70 -0.1
1,597,628 - IAI46_07560 0.70 +0.6
1,597,654 + IAI46_07560 0.73 -0.7
1,597,654 + IAI46_07560 0.73 +0.5
1,597,655 - IAI46_07560 0.74 +1.1
1,597,712 + IAI46_07560 0.80 -0.5

Or see this region's nucleotide sequence