Strain Fitness in Serratia liquefaciens MT49 around IAI46_06150

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06145 and IAI46_06150 are separated by 187 nucleotidesIAI46_06150 and IAI46_06155 overlap by 1 nucleotidesIAI46_06155 and IAI46_06160 are separated by 69 nucleotides IAI46_06145: IAI46_06145 - alpha-D-glucose phosphate-specific phosphoglucomutase, at 1,314,715 to 1,316,358 _06145 IAI46_06150: IAI46_06150 - helix-turn-helix transcriptional regulator, at 1,316,546 to 1,317,208 _06150 IAI46_06155: IAI46_06155 - DUF3861 domain-containing protein, at 1,317,208 to 1,317,507 _06155 IAI46_06160: IAI46_06160 - two-component system response regulator KdpE, at 1,317,577 to 1,318,266 _06160 Position (kb) 1316 1317 1318Strain fitness (log2 ratio) -2 -1 0 1 2at 1315.634 kb on - strand, within IAI46_06145at 1315.649 kb on + strand, within IAI46_06145at 1315.653 kb on + strand, within IAI46_06145at 1315.653 kb on + strand, within IAI46_06145at 1315.653 kb on + strand, within IAI46_06145at 1315.654 kb on - strand, within IAI46_06145at 1315.654 kb on - strand, within IAI46_06145at 1315.684 kb on + strand, within IAI46_06145at 1315.684 kb on + strand, within IAI46_06145at 1315.706 kb on - strand, within IAI46_06145at 1315.742 kb on + strand, within IAI46_06145at 1316.048 kb on - strand, within IAI46_06145at 1316.258 kb on - strandat 1316.267 kb on - strandat 1316.321 kb on + strandat 1316.356 kb on + strandat 1316.356 kb on + strandat 1316.356 kb on + strandat 1316.356 kb on + strandat 1316.423 kb on - strandat 1316.455 kb on + strandat 1316.478 kb on + strandat 1316.478 kb on + strandat 1316.480 kb on + strandat 1316.497 kb on + strandat 1316.499 kb on + strandat 1316.503 kb on + strandat 1316.538 kb on + strandat 1316.545 kb on + strandat 1316.545 kb on + strandat 1316.546 kb on - strandat 1316.565 kb on + strandat 1316.819 kb on + strand, within IAI46_06150at 1316.819 kb on + strand, within IAI46_06150at 1316.819 kb on + strand, within IAI46_06150at 1317.187 kb on + strandat 1317.188 kb on - strandat 1317.188 kb on - strandat 1317.231 kb on + strandat 1317.313 kb on - strand, within IAI46_06155at 1317.669 kb on + strand, within IAI46_06160at 1317.669 kb on + strand, within IAI46_06160at 1317.671 kb on + strand, within IAI46_06160at 1317.701 kb on + strand, within IAI46_06160at 1317.724 kb on + strand, within IAI46_06160at 1317.724 kb on + strand, within IAI46_06160at 1317.724 kb on + strand, within IAI46_06160at 1317.725 kb on - strand, within IAI46_06160at 1317.725 kb on - strand, within IAI46_06160at 1317.725 kb on - strand, within IAI46_06160at 1317.727 kb on + strand, within IAI46_06160at 1317.728 kb on - strand, within IAI46_06160at 1317.962 kb on + strand, within IAI46_06160at 1317.962 kb on + strand, within IAI46_06160at 1317.963 kb on - strand, within IAI46_06160at 1317.963 kb on - strand, within IAI46_06160at 1318.065 kb on + strand, within IAI46_06160at 1318.066 kb on - strand, within IAI46_06160at 1318.066 kb on - strand, within IAI46_06160at 1318.067 kb on + strand, within IAI46_06160at 1318.067 kb on + strand, within IAI46_06160at 1318.068 kb on - strand, within IAI46_06160at 1318.071 kb on + strand, within IAI46_06160at 1318.072 kb on - strand, within IAI46_06160at 1318.072 kb on - strand, within IAI46_06160

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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1,315,634 - IAI46_06145 0.56 -0.9
1,315,649 + IAI46_06145 0.57 -1.2
1,315,653 + IAI46_06145 0.57 -1.9
1,315,653 + IAI46_06145 0.57 +0.6
1,315,653 + IAI46_06145 0.57 -0.2
1,315,654 - IAI46_06145 0.57 +0.3
1,315,654 - IAI46_06145 0.57 +0.9
1,315,684 + IAI46_06145 0.59 -1.7
1,315,684 + IAI46_06145 0.59 -2.0
1,315,706 - IAI46_06145 0.60 +0.1
1,315,742 + IAI46_06145 0.62 -0.7
1,316,048 - IAI46_06145 0.81 -0.2
1,316,258 - -1.5
1,316,267 - -0.4
1,316,321 + -0.1
1,316,356 + -0.2
1,316,356 + -1.0
1,316,356 + +0.0
1,316,356 + -1.0
1,316,423 - -1.7
1,316,455 + -0.1
1,316,478 + -0.4
1,316,478 + +0.4
1,316,480 + +0.9
1,316,497 + +0.5
1,316,499 + +0.3
1,316,503 + -1.3
1,316,538 + +1.0
1,316,545 + +0.5
1,316,545 + +0.5
1,316,546 - -0.2
1,316,565 + -0.3
1,316,819 + IAI46_06150 0.41 -0.0
1,316,819 + IAI46_06150 0.41 -0.2
1,316,819 + IAI46_06150 0.41 +1.0
1,317,187 + -0.7
1,317,188 - +0.4
1,317,188 - -1.1
1,317,231 + -0.0
1,317,313 - IAI46_06155 0.35 -0.5
1,317,669 + IAI46_06160 0.13 -0.0
1,317,669 + IAI46_06160 0.13 -0.1
1,317,671 + IAI46_06160 0.14 +0.1
1,317,701 + IAI46_06160 0.18 -1.4
1,317,724 + IAI46_06160 0.21 +0.3
1,317,724 + IAI46_06160 0.21 +0.2
1,317,724 + IAI46_06160 0.21 +1.8
1,317,725 - IAI46_06160 0.21 +0.5
1,317,725 - IAI46_06160 0.21 +0.8
1,317,725 - IAI46_06160 0.21 -0.1
1,317,727 + IAI46_06160 0.22 +0.9
1,317,728 - IAI46_06160 0.22 +0.1
1,317,962 + IAI46_06160 0.56 +0.9
1,317,962 + IAI46_06160 0.56 +0.3
1,317,963 - IAI46_06160 0.56 +0.5
1,317,963 - IAI46_06160 0.56 +0.9
1,318,065 + IAI46_06160 0.71 +0.3
1,318,066 - IAI46_06160 0.71 -0.2
1,318,066 - IAI46_06160 0.71 -0.8
1,318,067 + IAI46_06160 0.71 +0.5
1,318,067 + IAI46_06160 0.71 -0.9
1,318,068 - IAI46_06160 0.71 +0.5
1,318,071 + IAI46_06160 0.72 -0.4
1,318,072 - IAI46_06160 0.72 -0.4
1,318,072 - IAI46_06160 0.72 +0.4

Or see this region's nucleotide sequence