Strain Fitness in Serratia liquefaciens MT49 around IAI46_04545

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04535 and IAI46_04540 are separated by 9 nucleotidesIAI46_04540 and IAI46_04545 are separated by 106 nucleotidesIAI46_04545 and IAI46_04550 are separated by 133 nucleotidesIAI46_04550 and IAI46_04555 are separated by 16 nucleotides IAI46_04535: IAI46_04535 - DUF333 domain-containing protein, at 978,602 to 978,865 _04535 IAI46_04540: IAI46_04540 - hypothetical protein, at 978,875 to 979,492 _04540 IAI46_04545: IAI46_04545 - transporter, at 979,599 to 980,288 _04545 IAI46_04550: IAI46_04550 - DeoR/GlpR transcriptional regulator, at 980,422 to 981,189 _04550 IAI46_04555: IAI46_04555 - VOC family protein, at 981,206 to 981,589 _04555 Position (kb) 979 980 981Strain fitness (log2 ratio) -2 -1 0 1at 978.648 kb on + strand, within IAI46_04535at 978.648 kb on + strand, within IAI46_04535at 978.670 kb on + strand, within IAI46_04535at 978.696 kb on + strand, within IAI46_04535at 978.731 kb on + strand, within IAI46_04535at 978.731 kb on + strand, within IAI46_04535at 978.732 kb on - strand, within IAI46_04535at 978.732 kb on - strand, within IAI46_04535at 978.785 kb on + strand, within IAI46_04535at 978.796 kb on + strand, within IAI46_04535at 978.796 kb on + strand, within IAI46_04535at 978.797 kb on - strand, within IAI46_04535at 978.903 kb on + strandat 978.903 kb on + strandat 978.989 kb on - strand, within IAI46_04540at 979.023 kb on + strand, within IAI46_04540at 979.023 kb on + strand, within IAI46_04540at 979.024 kb on - strand, within IAI46_04540at 979.024 kb on - strand, within IAI46_04540at 979.051 kb on + strand, within IAI46_04540at 979.051 kb on + strand, within IAI46_04540at 979.308 kb on + strand, within IAI46_04540at 979.362 kb on + strand, within IAI46_04540at 979.399 kb on + strand, within IAI46_04540at 979.400 kb on - strand, within IAI46_04540at 979.466 kb on + strandat 979.549 kb on - strandat 979.573 kb on + strandat 979.573 kb on + strandat 979.574 kb on - strandat 979.585 kb on - strandat 979.676 kb on + strand, within IAI46_04545at 979.677 kb on - strand, within IAI46_04545at 979.677 kb on - strand, within IAI46_04545at 979.720 kb on + strand, within IAI46_04545at 979.720 kb on + strand, within IAI46_04545at 979.720 kb on + strand, within IAI46_04545at 979.721 kb on - strand, within IAI46_04545at 979.721 kb on - strand, within IAI46_04545at 979.800 kb on - strand, within IAI46_04545at 979.800 kb on - strand, within IAI46_04545at 979.876 kb on - strand, within IAI46_04545at 979.991 kb on + strand, within IAI46_04545at 979.992 kb on - strand, within IAI46_04545at 979.997 kb on + strand, within IAI46_04545at 979.997 kb on + strand, within IAI46_04545at 980.076 kb on + strand, within IAI46_04545at 980.077 kb on - strand, within IAI46_04545at 980.263 kb on - strandat 980.267 kb on + strandat 980.267 kb on + strandat 980.268 kb on - strandat 980.268 kb on - strandat 980.269 kb on + strandat 980.269 kb on + strandat 980.269 kb on + strandat 980.269 kb on + strandat 980.270 kb on - strandat 980.270 kb on - strandat 980.292 kb on + strandat 980.293 kb on - strandat 980.301 kb on - strandat 980.301 kb on - strandat 980.312 kb on - strandat 980.466 kb on + strandat 980.587 kb on + strand, within IAI46_04550at 980.588 kb on - strand, within IAI46_04550at 980.709 kb on + strand, within IAI46_04550at 980.731 kb on - strand, within IAI46_04550at 980.740 kb on + strand, within IAI46_04550at 980.740 kb on + strand, within IAI46_04550at 980.740 kb on + strand, within IAI46_04550at 980.741 kb on - strand, within IAI46_04550at 980.950 kb on + strand, within IAI46_04550at 980.951 kb on - strand, within IAI46_04550at 981.041 kb on + strand, within IAI46_04550at 981.041 kb on + strand, within IAI46_04550at 981.042 kb on - strand, within IAI46_04550at 981.042 kb on - strand, within IAI46_04550at 981.067 kb on + strand, within IAI46_04550at 981.067 kb on + strand, within IAI46_04550at 981.068 kb on - strand, within IAI46_04550at 981.111 kb on - strand, within IAI46_04550at 981.173 kb on + strandat 981.178 kb on + strandat 981.179 kb on - strandat 981.179 kb on - strandat 981.214 kb on - strandat 981.242 kb on - strandat 981.242 kb on - strandat 981.272 kb on + strand, within IAI46_04555

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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978,648 + IAI46_04535 0.17 -0.8
978,648 + IAI46_04535 0.17 -1.8
978,670 + IAI46_04535 0.26 -0.3
978,696 + IAI46_04535 0.36 +0.7
978,731 + IAI46_04535 0.49 -0.2
978,731 + IAI46_04535 0.49 +0.5
978,732 - IAI46_04535 0.49 -1.0
978,732 - IAI46_04535 0.49 +0.4
978,785 + IAI46_04535 0.69 +0.1
978,796 + IAI46_04535 0.73 +0.1
978,796 + IAI46_04535 0.73 -0.7
978,797 - IAI46_04535 0.74 -1.5
978,903 + +1.7
978,903 + -0.1
978,989 - IAI46_04540 0.18 +1.6
979,023 + IAI46_04540 0.24 -0.5
979,023 + IAI46_04540 0.24 -0.4
979,024 - IAI46_04540 0.24 +1.2
979,024 - IAI46_04540 0.24 -0.1
979,051 + IAI46_04540 0.28 -1.0
979,051 + IAI46_04540 0.28 +0.0
979,308 + IAI46_04540 0.70 -0.5
979,362 + IAI46_04540 0.79 -1.4
979,399 + IAI46_04540 0.85 -0.4
979,400 - IAI46_04540 0.85 -1.6
979,466 + -0.0
979,549 - -0.2
979,573 + -0.3
979,573 + +1.0
979,574 - -0.0
979,585 - +0.7
979,676 + IAI46_04545 0.11 +0.5
979,677 - IAI46_04545 0.11 -0.5
979,677 - IAI46_04545 0.11 +1.1
979,720 + IAI46_04545 0.18 +1.5
979,720 + IAI46_04545 0.18 +0.2
979,720 + IAI46_04545 0.18 -0.4
979,721 - IAI46_04545 0.18 +0.9
979,721 - IAI46_04545 0.18 +0.2
979,800 - IAI46_04545 0.29 +0.7
979,800 - IAI46_04545 0.29 +0.3
979,876 - IAI46_04545 0.40 +0.5
979,991 + IAI46_04545 0.57 +0.1
979,992 - IAI46_04545 0.57 +0.8
979,997 + IAI46_04545 0.58 +0.9
979,997 + IAI46_04545 0.58 +0.7
980,076 + IAI46_04545 0.69 -0.3
980,077 - IAI46_04545 0.69 -0.0
980,263 - +0.2
980,267 + +0.6
980,267 + +0.5
980,268 - +0.3
980,268 - -1.1
980,269 + +1.4
980,269 + -0.2
980,269 + -0.8
980,269 + -0.3
980,270 - -0.2
980,270 - +1.4
980,292 + -1.3
980,293 - -1.3
980,301 - -0.1
980,301 - +0.5
980,312 - +0.4
980,466 + -0.3
980,587 + IAI46_04550 0.21 +0.5
980,588 - IAI46_04550 0.22 +0.0
980,709 + IAI46_04550 0.37 +0.5
980,731 - IAI46_04550 0.40 +0.9
980,740 + IAI46_04550 0.41 -0.3
980,740 + IAI46_04550 0.41 -0.7
980,740 + IAI46_04550 0.41 +0.2
980,741 - IAI46_04550 0.42 -0.0
980,950 + IAI46_04550 0.69 +0.4
980,951 - IAI46_04550 0.69 +0.4
981,041 + IAI46_04550 0.81 -0.5
981,041 + IAI46_04550 0.81 +0.5
981,042 - IAI46_04550 0.81 -0.6
981,042 - IAI46_04550 0.81 -0.1
981,067 + IAI46_04550 0.84 -0.6
981,067 + IAI46_04550 0.84 -0.8
981,068 - IAI46_04550 0.84 -0.9
981,111 - IAI46_04550 0.90 +0.6
981,173 + +0.8
981,178 + -1.3
981,179 - +0.1
981,179 - -0.7
981,214 - -0.2
981,242 - +0.1
981,242 - -0.3
981,272 + IAI46_04555 0.17 -0.0

Or see this region's nucleotide sequence