Strain Fitness in Serratia liquefaciens MT49 around IAI46_04465

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04460 and IAI46_04465 are separated by 101 nucleotidesIAI46_04465 and IAI46_04470 are separated by 75 nucleotides IAI46_04460: IAI46_04460 - condensation protein, at 954,519 to 955,865 _04460 IAI46_04465: IAI46_04465 - amino acid adenylation domain-containing protein, at 955,967 to 959,062 _04465 IAI46_04470: IAI46_04470 - glutamate racemase, at 959,138 to 960,739 _04470 Position (kb) 955 956 957 958 959 960Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 955.005 kb on + strand, within IAI46_04460at 955.006 kb on - strand, within IAI46_04460at 955.006 kb on - strand, within IAI46_04460at 955.007 kb on + strand, within IAI46_04460at 955.007 kb on + strand, within IAI46_04460at 955.007 kb on + strand, within IAI46_04460at 955.083 kb on + strand, within IAI46_04460at 955.084 kb on - strand, within IAI46_04460at 955.131 kb on + strand, within IAI46_04460at 955.131 kb on + strand, within IAI46_04460at 955.132 kb on - strand, within IAI46_04460at 955.182 kb on + strand, within IAI46_04460at 955.182 kb on + strand, within IAI46_04460at 955.183 kb on - strand, within IAI46_04460at 955.259 kb on + strand, within IAI46_04460at 955.260 kb on - strand, within IAI46_04460at 955.340 kb on + strand, within IAI46_04460at 955.341 kb on - strand, within IAI46_04460at 955.341 kb on - strand, within IAI46_04460at 955.404 kb on - strand, within IAI46_04460at 955.424 kb on + strand, within IAI46_04460at 955.425 kb on - strand, within IAI46_04460at 955.425 kb on - strand, within IAI46_04460at 955.592 kb on + strand, within IAI46_04460at 955.640 kb on + strand, within IAI46_04460at 955.640 kb on + strand, within IAI46_04460at 955.641 kb on - strand, within IAI46_04460at 955.651 kb on + strand, within IAI46_04460at 955.738 kb on - strandat 955.738 kb on - strandat 955.773 kb on + strandat 955.773 kb on + strandat 955.774 kb on - strandat 955.883 kb on + strandat 955.884 kb on - strandat 955.884 kb on - strandat 955.884 kb on - strandat 955.910 kb on + strandat 955.911 kb on - strandat 955.912 kb on + strandat 955.912 kb on + strandat 955.913 kb on - strandat 955.913 kb on - strandat 955.931 kb on - strandat 955.955 kb on - strandat 956.015 kb on + strandat 956.054 kb on - strandat 956.341 kb on + strand, within IAI46_04465at 956.341 kb on + strand, within IAI46_04465at 956.341 kb on + strand, within IAI46_04465at 956.341 kb on + strand, within IAI46_04465at 956.341 kb on + strand, within IAI46_04465at 956.342 kb on - strand, within IAI46_04465at 956.342 kb on - strand, within IAI46_04465at 956.342 kb on - strand, within IAI46_04465at 956.412 kb on + strand, within IAI46_04465at 956.413 kb on - strand, within IAI46_04465at 956.462 kb on + strand, within IAI46_04465at 956.479 kb on + strand, within IAI46_04465at 956.479 kb on + strand, within IAI46_04465at 956.480 kb on - strand, within IAI46_04465at 956.480 kb on - strand, within IAI46_04465at 956.547 kb on + strand, within IAI46_04465at 956.547 kb on + strand, within IAI46_04465at 956.576 kb on - strand, within IAI46_04465at 956.592 kb on + strand, within IAI46_04465at 956.592 kb on + strand, within IAI46_04465at 956.592 kb on + strand, within IAI46_04465at 956.593 kb on - strand, within IAI46_04465at 956.593 kb on - strand, within IAI46_04465at 956.595 kb on + strand, within IAI46_04465at 956.595 kb on + strand, within IAI46_04465at 956.596 kb on - strand, within IAI46_04465at 956.612 kb on - strand, within IAI46_04465at 956.672 kb on + strand, within IAI46_04465at 956.691 kb on + strand, within IAI46_04465at 956.691 kb on + strand, within IAI46_04465at 956.773 kb on + strand, within IAI46_04465at 956.774 kb on - strand, within IAI46_04465at 956.774 kb on - strand, within IAI46_04465at 956.778 kb on + strand, within IAI46_04465at 956.779 kb on - strand, within IAI46_04465at 956.779 kb on - strand, within IAI46_04465at 956.805 kb on + strand, within IAI46_04465at 956.805 kb on + strand, within IAI46_04465at 956.806 kb on - strand, within IAI46_04465at 956.806 kb on - strand, within IAI46_04465at 956.806 kb on - strand, within IAI46_04465at 956.943 kb on + strand, within IAI46_04465at 956.943 kb on + strand, within IAI46_04465at 956.944 kb on - strand, within IAI46_04465at 956.944 kb on - strand, within IAI46_04465at 956.944 kb on - strand, within IAI46_04465at 956.944 kb on - strand, within IAI46_04465at 957.001 kb on + strand, within IAI46_04465at 957.002 kb on - strand, within IAI46_04465at 957.160 kb on + strand, within IAI46_04465at 957.160 kb on + strand, within IAI46_04465at 957.161 kb on - strand, within IAI46_04465at 957.161 kb on - strand, within IAI46_04465at 957.161 kb on - strand, within IAI46_04465at 957.257 kb on - strand, within IAI46_04465at 957.295 kb on - strand, within IAI46_04465at 957.299 kb on - strand, within IAI46_04465at 957.299 kb on - strand, within IAI46_04465at 957.300 kb on + strand, within IAI46_04465at 957.300 kb on + strand, within IAI46_04465at 957.301 kb on - strand, within IAI46_04465at 957.306 kb on + strand, within IAI46_04465at 957.306 kb on + strand, within IAI46_04465at 957.306 kb on + strand, within IAI46_04465at 957.307 kb on - strand, within IAI46_04465at 957.309 kb on + strand, within IAI46_04465at 957.310 kb on - strand, within IAI46_04465at 957.310 kb on - strand, within IAI46_04465at 957.310 kb on - strand, within IAI46_04465at 957.403 kb on + strand, within IAI46_04465at 957.437 kb on + strand, within IAI46_04465at 957.437 kb on + strand, within IAI46_04465at 957.438 kb on - strand, within IAI46_04465at 957.438 kb on - strand, within IAI46_04465at 957.471 kb on + strand, within IAI46_04465at 957.479 kb on - strand, within IAI46_04465at 957.518 kb on - strand, within IAI46_04465at 957.518 kb on - strand, within IAI46_04465at 957.551 kb on + strand, within IAI46_04465at 957.551 kb on + strand, within IAI46_04465at 957.552 kb on - strand, within IAI46_04465at 957.576 kb on + strand, within IAI46_04465at 957.577 kb on - strand, within IAI46_04465at 957.577 kb on - strand, within IAI46_04465at 957.577 kb on - strand, within IAI46_04465at 957.671 kb on + strand, within IAI46_04465at 957.671 kb on + strand, within IAI46_04465at 957.671 kb on + strand, within IAI46_04465at 957.671 kb on + strand, within IAI46_04465at 957.741 kb on + strand, within IAI46_04465at 957.747 kb on + strand, within IAI46_04465at 957.783 kb on + strand, within IAI46_04465at 957.849 kb on - strand, within IAI46_04465at 958.002 kb on + strand, within IAI46_04465at 958.091 kb on + strand, within IAI46_04465at 958.204 kb on - strand, within IAI46_04465at 958.222 kb on + strand, within IAI46_04465at 958.222 kb on + strand, within IAI46_04465at 958.222 kb on + strand, within IAI46_04465at 958.222 kb on + strand, within IAI46_04465at 958.313 kb on - strand, within IAI46_04465at 958.385 kb on + strand, within IAI46_04465at 958.386 kb on - strand, within IAI46_04465at 958.438 kb on + strand, within IAI46_04465at 958.490 kb on + strand, within IAI46_04465at 958.616 kb on - strand, within IAI46_04465at 958.668 kb on + strand, within IAI46_04465at 958.669 kb on - strand, within IAI46_04465at 958.717 kb on + strand, within IAI46_04465at 958.758 kb on + strandat 958.759 kb on - strandat 958.759 kb on - strandat 958.759 kb on - strandat 958.877 kb on - strandat 958.878 kb on + strandat 958.878 kb on + strandat 958.878 kb on + strandat 958.879 kb on - strandat 958.879 kb on - strandat 958.879 kb on - strandat 958.879 kb on - strandat 958.879 kb on - strandat 958.902 kb on + strandat 959.028 kb on + strandat 959.028 kb on + strandat 959.028 kb on + strandat 959.029 kb on - strandat 959.029 kb on - strandat 959.048 kb on + strandat 959.049 kb on - strandat 959.065 kb on + strandat 959.099 kb on - strandat 959.099 kb on - strandat 959.137 kb on - strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.166 kb on - strandat 959.166 kb on - strandat 959.166 kb on - strandat 959.246 kb on + strandat 959.246 kb on + strandat 959.246 kb on + strandat 959.246 kb on + strandat 959.246 kb on + strandat 959.247 kb on - strandat 959.247 kb on - strandat 959.247 kb on - strandat 959.284 kb on + strandat 959.285 kb on - strandat 959.285 kb on - strandat 959.285 kb on - strandat 959.288 kb on + strandat 959.332 kb on + strand, within IAI46_04470at 959.471 kb on - strand, within IAI46_04470at 959.514 kb on + strand, within IAI46_04470at 959.515 kb on - strand, within IAI46_04470at 959.720 kb on - strand, within IAI46_04470at 959.804 kb on + strand, within IAI46_04470at 959.804 kb on + strand, within IAI46_04470at 959.804 kb on + strand, within IAI46_04470at 959.805 kb on - strand, within IAI46_04470at 959.807 kb on + strand, within IAI46_04470

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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955,005 + IAI46_04460 0.36 +0.4
955,006 - IAI46_04460 0.36 +0.3
955,006 - IAI46_04460 0.36 -0.2
955,007 + IAI46_04460 0.36 +0.2
955,007 + IAI46_04460 0.36 +0.6
955,007 + IAI46_04460 0.36 +0.2
955,083 + IAI46_04460 0.42 +0.4
955,084 - IAI46_04460 0.42 +0.3
955,131 + IAI46_04460 0.45 -1.2
955,131 + IAI46_04460 0.45 -1.3
955,132 - IAI46_04460 0.46 -1.0
955,182 + IAI46_04460 0.49 +0.3
955,182 + IAI46_04460 0.49 +0.7
955,183 - IAI46_04460 0.49 -0.4
955,259 + IAI46_04460 0.55 +2.2
955,260 - IAI46_04460 0.55 -0.4
955,340 + IAI46_04460 0.61 +1.0
955,341 - IAI46_04460 0.61 -0.2
955,341 - IAI46_04460 0.61 +0.7
955,404 - IAI46_04460 0.66 -0.0
955,424 + IAI46_04460 0.67 +0.8
955,425 - IAI46_04460 0.67 -1.7
955,425 - IAI46_04460 0.67 -0.9
955,592 + IAI46_04460 0.80 +0.1
955,640 + IAI46_04460 0.83 -0.1
955,640 + IAI46_04460 0.83 -0.3
955,641 - IAI46_04460 0.83 +2.0
955,651 + IAI46_04460 0.84 +0.9
955,738 - -0.2
955,738 - -0.1
955,773 + +0.1
955,773 + +1.0
955,774 - +1.5
955,883 + +0.8
955,884 - -0.0
955,884 - -1.2
955,884 - +0.2
955,910 + +0.3
955,911 - +0.6
955,912 + +0.6
955,912 + +2.8
955,913 - -0.8
955,913 - -0.3
955,931 - +0.5
955,955 - -1.2
956,015 + -1.1
956,054 - -0.7
956,341 + IAI46_04465 0.12 +0.5
956,341 + IAI46_04465 0.12 -0.6
956,341 + IAI46_04465 0.12 -0.0
956,341 + IAI46_04465 0.12 +1.1
956,341 + IAI46_04465 0.12 -2.2
956,342 - IAI46_04465 0.12 -1.3
956,342 - IAI46_04465 0.12 +0.1
956,342 - IAI46_04465 0.12 -0.8
956,412 + IAI46_04465 0.14 -0.1
956,413 - IAI46_04465 0.14 -0.6
956,462 + IAI46_04465 0.16 -0.3
956,479 + IAI46_04465 0.17 +0.8
956,479 + IAI46_04465 0.17 +1.0
956,480 - IAI46_04465 0.17 +0.3
956,480 - IAI46_04465 0.17 -1.3
956,547 + IAI46_04465 0.19 +0.4
956,547 + IAI46_04465 0.19 -0.4
956,576 - IAI46_04465 0.20 -0.3
956,592 + IAI46_04465 0.20 +0.6
956,592 + IAI46_04465 0.20 +0.7
956,592 + IAI46_04465 0.20 -0.1
956,593 - IAI46_04465 0.20 +0.4
956,593 - IAI46_04465 0.20 +1.2
956,595 + IAI46_04465 0.20 +0.3
956,595 + IAI46_04465 0.20 +0.8
956,596 - IAI46_04465 0.20 +0.3
956,612 - IAI46_04465 0.21 +0.8
956,672 + IAI46_04465 0.23 -0.2
956,691 + IAI46_04465 0.23 +0.4
956,691 + IAI46_04465 0.23 +0.3
956,773 + IAI46_04465 0.26 -0.1
956,774 - IAI46_04465 0.26 +0.1
956,774 - IAI46_04465 0.26 -0.1
956,778 + IAI46_04465 0.26 +0.7
956,779 - IAI46_04465 0.26 -0.5
956,779 - IAI46_04465 0.26 -0.3
956,805 + IAI46_04465 0.27 +1.0
956,805 + IAI46_04465 0.27 +0.0
956,806 - IAI46_04465 0.27 -0.1
956,806 - IAI46_04465 0.27 -0.3
956,806 - IAI46_04465 0.27 +1.2
956,943 + IAI46_04465 0.32 +1.1
956,943 + IAI46_04465 0.32 -0.2
956,944 - IAI46_04465 0.32 +0.3
956,944 - IAI46_04465 0.32 +1.1
956,944 - IAI46_04465 0.32 -0.1
956,944 - IAI46_04465 0.32 +0.1
957,001 + IAI46_04465 0.33 +0.7
957,002 - IAI46_04465 0.33 +0.1
957,160 + IAI46_04465 0.39 +0.7
957,160 + IAI46_04465 0.39 -0.0
957,161 - IAI46_04465 0.39 +0.2
957,161 - IAI46_04465 0.39 -1.9
957,161 - IAI46_04465 0.39 +0.9
957,257 - IAI46_04465 0.42 +0.1
957,295 - IAI46_04465 0.43 -0.2
957,299 - IAI46_04465 0.43 +0.3
957,299 - IAI46_04465 0.43 -0.3
957,300 + IAI46_04465 0.43 -0.7
957,300 + IAI46_04465 0.43 +0.9
957,301 - IAI46_04465 0.43 -1.4
957,306 + IAI46_04465 0.43 +2.5
957,306 + IAI46_04465 0.43 +1.4
957,306 + IAI46_04465 0.43 -1.1
957,307 - IAI46_04465 0.43 +0.0
957,309 + IAI46_04465 0.43 -0.3
957,310 - IAI46_04465 0.43 +0.1
957,310 - IAI46_04465 0.43 -0.3
957,310 - IAI46_04465 0.43 -0.9
957,403 + IAI46_04465 0.46 +0.0
957,437 + IAI46_04465 0.47 +0.8
957,437 + IAI46_04465 0.47 +0.7
957,438 - IAI46_04465 0.48 +1.2
957,438 - IAI46_04465 0.48 +0.4
957,471 + IAI46_04465 0.49 -0.5
957,479 - IAI46_04465 0.49 +0.3
957,518 - IAI46_04465 0.50 +0.4
957,518 - IAI46_04465 0.50 +0.4
957,551 + IAI46_04465 0.51 -0.2
957,551 + IAI46_04465 0.51 -1.6
957,552 - IAI46_04465 0.51 -0.7
957,576 + IAI46_04465 0.52 -0.1
957,577 - IAI46_04465 0.52 +1.0
957,577 - IAI46_04465 0.52 +0.3
957,577 - IAI46_04465 0.52 +1.2
957,671 + IAI46_04465 0.55 -0.1
957,671 + IAI46_04465 0.55 +0.9
957,671 + IAI46_04465 0.55 +0.1
957,671 + IAI46_04465 0.55 +0.1
957,741 + IAI46_04465 0.57 -2.8
957,747 + IAI46_04465 0.57 -0.1
957,783 + IAI46_04465 0.59 +0.3
957,849 - IAI46_04465 0.61 -1.2
958,002 + IAI46_04465 0.66 -0.5
958,091 + IAI46_04465 0.69 -0.4
958,204 - IAI46_04465 0.72 +0.3
958,222 + IAI46_04465 0.73 -1.3
958,222 + IAI46_04465 0.73 -0.3
958,222 + IAI46_04465 0.73 +0.0
958,222 + IAI46_04465 0.73 +0.2
958,313 - IAI46_04465 0.76 -0.5
958,385 + IAI46_04465 0.78 +0.2
958,386 - IAI46_04465 0.78 +0.1
958,438 + IAI46_04465 0.80 -0.3
958,490 + IAI46_04465 0.81 +0.3
958,616 - IAI46_04465 0.86 +2.2
958,668 + IAI46_04465 0.87 -0.2
958,669 - IAI46_04465 0.87 -0.0
958,717 + IAI46_04465 0.89 -0.4
958,758 + +0.3
958,759 - -0.2
958,759 - -0.4
958,759 - +0.2
958,877 - -0.8
958,878 + +0.5
958,878 + -0.5
958,878 + +1.0
958,879 - +0.3
958,879 - -0.3
958,879 - -1.0
958,879 - -0.6
958,879 - -1.6
958,902 + +0.7
959,028 + +0.0
959,028 + +1.3
959,028 + -0.3
959,029 - -0.3
959,029 - -1.4
959,048 + +0.3
959,049 - +0.9
959,065 + -0.5
959,099 - +0.1
959,099 - +0.8
959,137 - -0.3
959,165 + +0.2
959,165 + +1.2
959,165 + +0.8
959,166 - -0.4
959,166 - -0.2
959,166 - +0.2
959,246 + -0.5
959,246 + -0.8
959,246 + -0.2
959,246 + +0.5
959,246 + -0.0
959,247 - -1.2
959,247 - -1.2
959,247 - +0.6
959,284 + -0.3
959,285 - +0.9
959,285 - +0.4
959,285 - -0.4
959,288 + +0.4
959,332 + IAI46_04470 0.12 +0.0
959,471 - IAI46_04470 0.21 +0.6
959,514 + IAI46_04470 0.23 +0.3
959,515 - IAI46_04470 0.24 -0.4
959,720 - IAI46_04470 0.36 +0.2
959,804 + IAI46_04470 0.42 +0.6
959,804 + IAI46_04470 0.42 +0.1
959,804 + IAI46_04470 0.42 -0.3
959,805 - IAI46_04470 0.42 +0.9
959,807 + IAI46_04470 0.42 +0.1

Or see this region's nucleotide sequence