Strain Fitness in Serratia liquefaciens MT49 around IAI46_03785

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03775 and IAI46_03780 overlap by 7 nucleotidesIAI46_03780 and IAI46_03785 are separated by 325 nucleotidesIAI46_03785 and IAI46_03790 are separated by 54 nucleotides IAI46_03775: IAI46_03775 - 5'/3'-nucleotidase SurE, at 821,032 to 821,793 _03775 IAI46_03780: IAI46_03780 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 821,787 to 822,413 _03780 IAI46_03785: IAI46_03785 - murein hydrolase activator NlpD, at 822,739 to 823,731 _03785 IAI46_03790: IAI46_03790 - RNA polymerase sigma factor RpoS, at 823,786 to 824,784 _03790 Position (kb) 822 823 824Strain fitness (log2 ratio) -2 -1 0 1 2at 821.747 kb on + strandat 821.751 kb on - strandat 821.801 kb on + strandat 821.970 kb on + strand, within IAI46_03780at 821.970 kb on + strand, within IAI46_03780at 821.970 kb on + strand, within IAI46_03780at 821.970 kb on + strand, within IAI46_03780at 821.970 kb on + strand, within IAI46_03780at 821.971 kb on - strand, within IAI46_03780at 821.971 kb on - strand, within IAI46_03780at 821.971 kb on - strand, within IAI46_03780at 821.971 kb on - strand, within IAI46_03780at 821.971 kb on - strand, within IAI46_03780at 821.972 kb on + strand, within IAI46_03780at 821.972 kb on + strand, within IAI46_03780at 821.973 kb on - strand, within IAI46_03780at 821.973 kb on - strand, within IAI46_03780at 822.061 kb on + strand, within IAI46_03780at 822.101 kb on + strand, within IAI46_03780at 822.155 kb on + strand, within IAI46_03780at 822.155 kb on + strand, within IAI46_03780at 822.156 kb on - strand, within IAI46_03780at 822.156 kb on - strand, within IAI46_03780at 822.164 kb on + strand, within IAI46_03780at 822.221 kb on + strand, within IAI46_03780at 822.222 kb on - strand, within IAI46_03780at 822.329 kb on + strand, within IAI46_03780at 822.330 kb on - strand, within IAI46_03780at 822.330 kb on - strand, within IAI46_03780at 822.330 kb on - strand, within IAI46_03780at 822.480 kb on - strandat 822.507 kb on - strandat 822.533 kb on + strandat 822.533 kb on + strandat 822.534 kb on - strandat 822.534 kb on - strandat 822.636 kb on + strandat 822.636 kb on + strandat 822.636 kb on + strandat 822.637 kb on - strandat 822.644 kb on + strandat 822.666 kb on + strandat 822.666 kb on + strandat 822.667 kb on - strandat 822.673 kb on + strandat 822.674 kb on - strandat 822.690 kb on - strandat 822.690 kb on - strandat 822.691 kb on + strandat 822.691 kb on + strandat 822.700 kb on + strandat 822.701 kb on - strandat 822.744 kb on + strandat 822.744 kb on + strandat 822.745 kb on - strandat 822.749 kb on + strandat 822.749 kb on + strandat 822.768 kb on + strandat 822.768 kb on + strandat 822.769 kb on - strandat 822.776 kb on + strandat 822.777 kb on - strandat 822.798 kb on + strandat 822.798 kb on + strandat 822.799 kb on - strandat 822.825 kb on + strandat 822.825 kb on + strandat 822.910 kb on + strand, within IAI46_03785at 822.922 kb on + strand, within IAI46_03785at 822.923 kb on - strand, within IAI46_03785at 822.924 kb on + strand, within IAI46_03785at 822.924 kb on + strand, within IAI46_03785at 822.924 kb on + strand, within IAI46_03785at 822.925 kb on - strand, within IAI46_03785at 822.946 kb on + strand, within IAI46_03785at 822.947 kb on - strand, within IAI46_03785at 822.947 kb on - strand, within IAI46_03785at 822.955 kb on - strand, within IAI46_03785at 822.957 kb on + strand, within IAI46_03785at 822.957 kb on + strand, within IAI46_03785at 822.957 kb on + strand, within IAI46_03785at 822.957 kb on + strand, within IAI46_03785at 822.957 kb on + strand, within IAI46_03785at 822.957 kb on + strand, within IAI46_03785at 822.958 kb on - strand, within IAI46_03785at 822.958 kb on - strand, within IAI46_03785at 822.958 kb on - strand, within IAI46_03785at 822.958 kb on - strand, within IAI46_03785at 822.961 kb on + strand, within IAI46_03785at 822.961 kb on + strand, within IAI46_03785at 822.962 kb on - strand, within IAI46_03785at 822.962 kb on - strand, within IAI46_03785at 822.962 kb on - strand, within IAI46_03785at 822.962 kb on - strand, within IAI46_03785at 822.963 kb on + strand, within IAI46_03785at 823.039 kb on - strand, within IAI46_03785at 823.044 kb on + strand, within IAI46_03785at 823.045 kb on - strand, within IAI46_03785at 823.057 kb on + strand, within IAI46_03785at 823.058 kb on - strand, within IAI46_03785at 823.092 kb on + strand, within IAI46_03785at 823.159 kb on - strand, within IAI46_03785at 823.159 kb on - strand, within IAI46_03785at 823.219 kb on + strand, within IAI46_03785at 823.252 kb on - strand, within IAI46_03785at 823.260 kb on - strand, within IAI46_03785at 823.287 kb on + strand, within IAI46_03785at 823.287 kb on + strand, within IAI46_03785at 823.361 kb on + strand, within IAI46_03785at 823.361 kb on + strand, within IAI46_03785at 823.365 kb on + strand, within IAI46_03785at 823.396 kb on - strand, within IAI46_03785at 823.396 kb on - strand, within IAI46_03785at 823.396 kb on - strand, within IAI46_03785at 823.402 kb on - strand, within IAI46_03785at 823.429 kb on - strand, within IAI46_03785at 823.429 kb on - strand, within IAI46_03785at 823.465 kb on - strand, within IAI46_03785at 823.490 kb on + strand, within IAI46_03785at 823.490 kb on + strand, within IAI46_03785at 823.490 kb on + strand, within IAI46_03785at 823.491 kb on - strand, within IAI46_03785at 823.491 kb on - strand, within IAI46_03785at 823.495 kb on + strand, within IAI46_03785at 823.496 kb on - strand, within IAI46_03785at 823.496 kb on - strand, within IAI46_03785at 823.529 kb on + strand, within IAI46_03785at 823.529 kb on + strand, within IAI46_03785at 823.556 kb on - strand, within IAI46_03785at 823.556 kb on - strand, within IAI46_03785at 823.568 kb on - strand, within IAI46_03785at 823.641 kb on + strandat 823.641 kb on + strandat 823.641 kb on + strandat 823.729 kb on + strandat 823.743 kb on + strandat 823.744 kb on - strandat 823.751 kb on + strandat 823.766 kb on - strandat 823.775 kb on - strandat 823.775 kb on - strandat 823.785 kb on + strandat 823.785 kb on + strandat 823.785 kb on + strandat 823.785 kb on + strandat 823.785 kb on + strandat 823.785 kb on + strandat 823.785 kb on + strandat 823.785 kb on + strandat 823.785 kb on + strandat 823.797 kb on + strandat 823.798 kb on - strandat 823.883 kb on + strandat 823.883 kb on + strandat 823.884 kb on - strandat 824.224 kb on + strand, within IAI46_03790at 824.224 kb on + strand, within IAI46_03790at 824.224 kb on + strand, within IAI46_03790at 824.224 kb on + strand, within IAI46_03790at 824.224 kb on + strand, within IAI46_03790at 824.224 kb on + strand, within IAI46_03790at 824.224 kb on + strand, within IAI46_03790at 824.225 kb on - strand, within IAI46_03790at 824.225 kb on - strand, within IAI46_03790at 824.229 kb on + strand, within IAI46_03790at 824.281 kb on - strand, within IAI46_03790at 824.303 kb on + strand, within IAI46_03790at 824.303 kb on + strand, within IAI46_03790at 824.303 kb on + strand, within IAI46_03790at 824.303 kb on + strand, within IAI46_03790at 824.307 kb on + strand, within IAI46_03790at 824.307 kb on + strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.445 kb on + strand, within IAI46_03790at 824.445 kb on + strand, within IAI46_03790at 824.446 kb on - strand, within IAI46_03790at 824.446 kb on - strand, within IAI46_03790at 824.638 kb on + strand, within IAI46_03790

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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821,747 + +0.6
821,751 - +0.7
821,801 + -0.0
821,970 + IAI46_03780 0.29 +0.3
821,970 + IAI46_03780 0.29 +1.3
821,970 + IAI46_03780 0.29 -1.1
821,970 + IAI46_03780 0.29 +0.9
821,970 + IAI46_03780 0.29 +1.8
821,971 - IAI46_03780 0.29 -0.3
821,971 - IAI46_03780 0.29 +1.6
821,971 - IAI46_03780 0.29 +0.2
821,971 - IAI46_03780 0.29 +1.3
821,971 - IAI46_03780 0.29 -0.1
821,972 + IAI46_03780 0.30 +0.7
821,972 + IAI46_03780 0.30 +0.8
821,973 - IAI46_03780 0.30 +0.2
821,973 - IAI46_03780 0.30 +0.4
822,061 + IAI46_03780 0.44 -0.4
822,101 + IAI46_03780 0.50 -1.6
822,155 + IAI46_03780 0.59 -0.2
822,155 + IAI46_03780 0.59 +1.0
822,156 - IAI46_03780 0.59 +0.0
822,156 - IAI46_03780 0.59 -0.6
822,164 + IAI46_03780 0.60 -0.5
822,221 + IAI46_03780 0.69 -0.3
822,222 - IAI46_03780 0.69 +0.3
822,329 + IAI46_03780 0.86 -0.5
822,330 - IAI46_03780 0.87 -0.2
822,330 - IAI46_03780 0.87 -1.0
822,330 - IAI46_03780 0.87 +0.2
822,480 - +0.5
822,507 - +0.1
822,533 + -0.4
822,533 + +0.4
822,534 - +1.1
822,534 - +0.9
822,636 + +0.6
822,636 + +0.4
822,636 + +0.4
822,637 - +0.6
822,644 + +0.3
822,666 + +0.6
822,666 + -0.3
822,667 - -0.6
822,673 + -0.2
822,674 - -0.8
822,690 - -0.7
822,690 - +0.3
822,691 + +0.2
822,691 + +0.4
822,700 + -1.6
822,701 - -0.3
822,744 + +0.5
822,744 + -1.4
822,745 - +0.1
822,749 + +0.2
822,749 + +0.0
822,768 + -2.3
822,768 + +0.0
822,769 - +0.1
822,776 + +0.3
822,777 - -2.1
822,798 + -2.7
822,798 + +0.5
822,799 - +0.8
822,825 + -0.2
822,825 + +0.1
822,910 + IAI46_03785 0.17 -0.4
822,922 + IAI46_03785 0.18 +0.9
822,923 - IAI46_03785 0.19 +0.0
822,924 + IAI46_03785 0.19 -0.6
822,924 + IAI46_03785 0.19 -0.6
822,924 + IAI46_03785 0.19 +2.3
822,925 - IAI46_03785 0.19 +0.0
822,946 + IAI46_03785 0.21 -0.6
822,947 - IAI46_03785 0.21 +0.6
822,947 - IAI46_03785 0.21 +0.3
822,955 - IAI46_03785 0.22 +0.8
822,957 + IAI46_03785 0.22 +0.2
822,957 + IAI46_03785 0.22 -0.1
822,957 + IAI46_03785 0.22 -0.9
822,957 + IAI46_03785 0.22 -0.5
822,957 + IAI46_03785 0.22 +1.0
822,957 + IAI46_03785 0.22 +0.6
822,958 - IAI46_03785 0.22 +0.2
822,958 - IAI46_03785 0.22 -0.7
822,958 - IAI46_03785 0.22 -0.0
822,958 - IAI46_03785 0.22 -0.2
822,961 + IAI46_03785 0.22 +0.2
822,961 + IAI46_03785 0.22 +0.2
822,962 - IAI46_03785 0.22 +1.1
822,962 - IAI46_03785 0.22 -1.2
822,962 - IAI46_03785 0.22 +0.9
822,962 - IAI46_03785 0.22 +0.4
822,963 + IAI46_03785 0.23 +0.6
823,039 - IAI46_03785 0.30 +1.1
823,044 + IAI46_03785 0.31 +0.2
823,045 - IAI46_03785 0.31 +0.3
823,057 + IAI46_03785 0.32 +1.5
823,058 - IAI46_03785 0.32 +0.4
823,092 + IAI46_03785 0.36 -0.2
823,159 - IAI46_03785 0.42 -0.5
823,159 - IAI46_03785 0.42 +0.7
823,219 + IAI46_03785 0.48 -0.7
823,252 - IAI46_03785 0.52 -0.2
823,260 - IAI46_03785 0.52 -1.2
823,287 + IAI46_03785 0.55 +0.5
823,287 + IAI46_03785 0.55 +1.4
823,361 + IAI46_03785 0.63 +0.3
823,361 + IAI46_03785 0.63 +0.3
823,365 + IAI46_03785 0.63 +0.8
823,396 - IAI46_03785 0.66 +1.5
823,396 - IAI46_03785 0.66 +0.4
823,396 - IAI46_03785 0.66 -0.0
823,402 - IAI46_03785 0.67 -0.3
823,429 - IAI46_03785 0.69 -0.3
823,429 - IAI46_03785 0.69 -0.0
823,465 - IAI46_03785 0.73 +0.0
823,490 + IAI46_03785 0.76 -0.1
823,490 + IAI46_03785 0.76 +1.0
823,490 + IAI46_03785 0.76 +0.9
823,491 - IAI46_03785 0.76 -0.0
823,491 - IAI46_03785 0.76 +0.6
823,495 + IAI46_03785 0.76 -1.2
823,496 - IAI46_03785 0.76 +0.2
823,496 - IAI46_03785 0.76 +0.9
823,529 + IAI46_03785 0.80 -0.1
823,529 + IAI46_03785 0.80 +0.2
823,556 - IAI46_03785 0.82 +0.0
823,556 - IAI46_03785 0.82 -1.0
823,568 - IAI46_03785 0.83 +1.2
823,641 + +0.2
823,641 + -0.3
823,641 + +0.2
823,729 + +1.2
823,743 + +0.8
823,744 - +1.0
823,751 + +0.7
823,766 - -0.7
823,775 - +0.5
823,775 - +0.8
823,785 + +0.8
823,785 + +0.8
823,785 + +0.1
823,785 + +0.3
823,785 + +0.9
823,785 + -0.7
823,785 + +1.0
823,785 + +0.6
823,785 + +0.3
823,797 + +0.7
823,798 - +1.4
823,883 + -0.3
823,883 + +0.4
823,884 - +1.6
824,224 + IAI46_03790 0.44 +0.6
824,224 + IAI46_03790 0.44 +0.3
824,224 + IAI46_03790 0.44 +0.4
824,224 + IAI46_03790 0.44 +0.7
824,224 + IAI46_03790 0.44 +0.2
824,224 + IAI46_03790 0.44 -0.3
824,224 + IAI46_03790 0.44 +0.5
824,225 - IAI46_03790 0.44 +0.6
824,225 - IAI46_03790 0.44 +0.7
824,229 + IAI46_03790 0.44 +1.1
824,281 - IAI46_03790 0.50 +0.7
824,303 + IAI46_03790 0.52 +0.9
824,303 + IAI46_03790 0.52 +0.5
824,303 + IAI46_03790 0.52 +0.4
824,303 + IAI46_03790 0.52 +1.2
824,307 + IAI46_03790 0.52 +0.7
824,307 + IAI46_03790 0.52 -0.1
824,308 - IAI46_03790 0.52 -0.1
824,308 - IAI46_03790 0.52 +0.4
824,308 - IAI46_03790 0.52 -1.3
824,308 - IAI46_03790 0.52 -0.5
824,308 - IAI46_03790 0.52 -0.6
824,308 - IAI46_03790 0.52 -0.2
824,308 - IAI46_03790 0.52 +1.4
824,445 + IAI46_03790 0.66 +1.3
824,445 + IAI46_03790 0.66 -0.6
824,446 - IAI46_03790 0.66 +0.7
824,446 - IAI46_03790 0.66 +0.9
824,638 + IAI46_03790 0.85 +0.5

Or see this region's nucleotide sequence