Strain Fitness in Serratia liquefaciens MT49 around IAI46_02780

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02770 and IAI46_02775 are separated by 17 nucleotidesIAI46_02775 and IAI46_02780 are separated by 37 nucleotidesIAI46_02780 and IAI46_02785 are separated by 327 nucleotides IAI46_02770: IAI46_02770 - 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component, at 596,349 to 597,911 _02770 IAI46_02775: IAI46_02775 - 4-hydroxyphenylacetate 3-monooxygenase, reductase component, at 597,929 to 598,444 _02775 IAI46_02780: IAI46_02780 - D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH, at 598,482 to 599,624 _02780 IAI46_02785: IAI46_02785 - FadR family transcriptional regulator, at 599,952 to 600,710 _02785 Position (kb) 598 599 600Strain fitness (log2 ratio) -2 -1 0 1 2at 597.556 kb on - strand, within IAI46_02770at 597.584 kb on + strand, within IAI46_02770at 597.585 kb on - strand, within IAI46_02770at 597.585 kb on - strand, within IAI46_02770at 597.603 kb on + strand, within IAI46_02770at 597.616 kb on - strand, within IAI46_02770at 597.616 kb on - strand, within IAI46_02770at 597.620 kb on - strand, within IAI46_02770at 597.635 kb on + strand, within IAI46_02770at 597.718 kb on - strand, within IAI46_02770at 597.718 kb on - strand, within IAI46_02770at 597.718 kb on - strand, within IAI46_02770at 597.729 kb on + strand, within IAI46_02770at 597.730 kb on - strand, within IAI46_02770at 597.869 kb on + strandat 597.872 kb on + strandat 597.872 kb on + strandat 597.896 kb on + strandat 597.896 kb on + strandat 597.928 kb on + strandat 597.928 kb on + strandat 597.928 kb on + strandat 597.928 kb on + strandat 597.928 kb on + strandat 597.928 kb on + strandat 597.928 kb on + strandat 597.928 kb on + strandat 597.928 kb on + strandat 597.929 kb on - strandat 597.929 kb on - strandat 597.929 kb on - strandat 597.929 kb on - strandat 597.929 kb on - strandat 597.929 kb on - strandat 597.929 kb on - strandat 597.929 kb on - strandat 597.929 kb on - strandat 598.007 kb on - strand, within IAI46_02775at 598.037 kb on - strand, within IAI46_02775at 598.152 kb on + strand, within IAI46_02775at 598.153 kb on - strand, within IAI46_02775at 598.153 kb on - strand, within IAI46_02775at 598.196 kb on - strand, within IAI46_02775at 598.273 kb on + strand, within IAI46_02775at 598.274 kb on - strand, within IAI46_02775at 598.274 kb on - strand, within IAI46_02775at 598.318 kb on + strand, within IAI46_02775at 598.338 kb on - strand, within IAI46_02775at 598.338 kb on - strand, within IAI46_02775at 598.391 kb on + strand, within IAI46_02775at 598.391 kb on + strand, within IAI46_02775at 598.483 kb on + strandat 598.483 kb on + strandat 598.484 kb on - strandat 598.547 kb on + strandat 598.566 kb on + strandat 598.567 kb on - strandat 598.610 kb on + strand, within IAI46_02780at 598.610 kb on + strand, within IAI46_02780at 598.610 kb on + strand, within IAI46_02780at 598.611 kb on - strand, within IAI46_02780at 598.612 kb on + strand, within IAI46_02780at 598.612 kb on + strand, within IAI46_02780at 598.612 kb on + strand, within IAI46_02780at 598.612 kb on + strand, within IAI46_02780at 598.612 kb on + strand, within IAI46_02780at 598.612 kb on + strand, within IAI46_02780at 598.613 kb on - strand, within IAI46_02780at 598.613 kb on - strand, within IAI46_02780at 598.613 kb on - strand, within IAI46_02780at 598.613 kb on - strand, within IAI46_02780at 598.680 kb on - strand, within IAI46_02780at 598.680 kb on - strand, within IAI46_02780at 598.680 kb on - strand, within IAI46_02780at 598.681 kb on + strand, within IAI46_02780at 598.681 kb on + strand, within IAI46_02780at 598.681 kb on + strand, within IAI46_02780at 598.681 kb on + strand, within IAI46_02780at 598.681 kb on + strand, within IAI46_02780at 598.681 kb on + strand, within IAI46_02780at 598.682 kb on - strand, within IAI46_02780at 598.682 kb on - strand, within IAI46_02780at 598.682 kb on - strand, within IAI46_02780at 598.682 kb on - strand, within IAI46_02780at 598.682 kb on - strand, within IAI46_02780at 598.682 kb on - strand, within IAI46_02780at 598.682 kb on - strand, within IAI46_02780at 598.682 kb on - strand, within IAI46_02780at 598.682 kb on - strand, within IAI46_02780at 598.762 kb on + strand, within IAI46_02780at 598.762 kb on + strand, within IAI46_02780at 599.017 kb on + strand, within IAI46_02780at 599.018 kb on - strand, within IAI46_02780at 599.062 kb on + strand, within IAI46_02780at 599.063 kb on - strand, within IAI46_02780at 599.077 kb on + strand, within IAI46_02780at 599.078 kb on - strand, within IAI46_02780at 599.078 kb on - strand, within IAI46_02780at 599.078 kb on - strand, within IAI46_02780at 599.088 kb on + strand, within IAI46_02780at 599.089 kb on - strand, within IAI46_02780at 599.089 kb on - strand, within IAI46_02780at 599.255 kb on + strand, within IAI46_02780at 599.257 kb on + strand, within IAI46_02780at 599.258 kb on - strand, within IAI46_02780at 599.258 kb on - strand, within IAI46_02780at 599.269 kb on + strand, within IAI46_02780at 599.269 kb on + strand, within IAI46_02780at 599.269 kb on + strand, within IAI46_02780at 599.269 kb on + strand, within IAI46_02780at 599.269 kb on + strand, within IAI46_02780at 599.269 kb on + strand, within IAI46_02780at 599.269 kb on + strand, within IAI46_02780at 599.270 kb on - strand, within IAI46_02780at 599.270 kb on - strand, within IAI46_02780at 599.270 kb on - strand, within IAI46_02780at 599.270 kb on - strand, within IAI46_02780at 599.287 kb on + strand, within IAI46_02780at 599.288 kb on - strand, within IAI46_02780at 599.501 kb on - strand, within IAI46_02780at 599.664 kb on + strandat 599.664 kb on + strandat 599.665 kb on - strandat 599.665 kb on - strandat 599.665 kb on - strandat 599.667 kb on - strandat 599.731 kb on + strandat 599.731 kb on + strandat 599.731 kb on + strandat 599.731 kb on + strandat 599.732 kb on - strandat 599.732 kb on - strandat 599.732 kb on - strandat 599.736 kb on + strandat 599.737 kb on - strandat 599.747 kb on + strandat 599.748 kb on - strandat 599.748 kb on - strandat 599.750 kb on - strandat 599.750 kb on - strandat 599.750 kb on - strandat 599.750 kb on - strandat 599.762 kb on + strandat 599.789 kb on + strandat 599.821 kb on + strandat 599.842 kb on - strandat 599.856 kb on + strandat 599.856 kb on + strandat 599.856 kb on + strandat 599.856 kb on + strandat 599.857 kb on - strandat 599.857 kb on - strandat 599.857 kb on - strandat 599.857 kb on - strandat 599.869 kb on + strandat 599.869 kb on + strandat 599.870 kb on - strandat 599.870 kb on - strandat 599.870 kb on - strandat 600.095 kb on + strand, within IAI46_02785at 600.095 kb on + strand, within IAI46_02785at 600.096 kb on - strand, within IAI46_02785at 600.097 kb on + strand, within IAI46_02785at 600.097 kb on + strand, within IAI46_02785at 600.097 kb on + strand, within IAI46_02785at 600.098 kb on - strand, within IAI46_02785at 600.098 kb on - strand, within IAI46_02785at 600.112 kb on - strand, within IAI46_02785at 600.158 kb on + strand, within IAI46_02785at 600.158 kb on + strand, within IAI46_02785at 600.158 kb on + strand, within IAI46_02785at 600.159 kb on - strand, within IAI46_02785at 600.159 kb on - strand, within IAI46_02785at 600.159 kb on - strand, within IAI46_02785at 600.159 kb on - strand, within IAI46_02785at 600.166 kb on + strand, within IAI46_02785at 600.166 kb on + strand, within IAI46_02785at 600.167 kb on - strand, within IAI46_02785at 600.167 kb on - strand, within IAI46_02785at 600.266 kb on - strand, within IAI46_02785at 600.547 kb on - strand, within IAI46_02785

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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597,556 - IAI46_02770 0.77 +0.1
597,584 + IAI46_02770 0.79 +1.3
597,585 - IAI46_02770 0.79 -0.4
597,585 - IAI46_02770 0.79 +2.1
597,603 + IAI46_02770 0.80 +1.4
597,616 - IAI46_02770 0.81 +0.9
597,616 - IAI46_02770 0.81 +0.3
597,620 - IAI46_02770 0.81 +0.3
597,635 + IAI46_02770 0.82 -0.5
597,718 - IAI46_02770 0.88 -0.2
597,718 - IAI46_02770 0.88 -0.8
597,718 - IAI46_02770 0.88 +1.1
597,729 + IAI46_02770 0.88 +1.1
597,730 - IAI46_02770 0.88 +0.1
597,869 + -0.5
597,872 + +0.8
597,872 + -0.4
597,896 + +0.2
597,896 + +1.1
597,928 + +0.9
597,928 + +1.0
597,928 + +0.1
597,928 + -1.2
597,928 + -0.5
597,928 + -0.4
597,928 + +1.9
597,928 + +1.7
597,928 + -0.0
597,929 - -2.1
597,929 - +1.3
597,929 - +0.4
597,929 - +0.7
597,929 - +0.9
597,929 - +0.5
597,929 - +0.4
597,929 - -1.4
597,929 - -0.4
598,007 - IAI46_02775 0.15 -0.4
598,037 - IAI46_02775 0.21 +0.8
598,152 + IAI46_02775 0.43 +0.6
598,153 - IAI46_02775 0.43 -0.8
598,153 - IAI46_02775 0.43 +1.6
598,196 - IAI46_02775 0.52 -0.3
598,273 + IAI46_02775 0.67 +0.7
598,274 - IAI46_02775 0.67 +1.3
598,274 - IAI46_02775 0.67 +0.2
598,318 + IAI46_02775 0.75 +0.5
598,338 - IAI46_02775 0.79 -0.3
598,338 - IAI46_02775 0.79 -0.4
598,391 + IAI46_02775 0.90 +0.8
598,391 + IAI46_02775 0.90 +0.5
598,483 + +1.6
598,483 + +0.1
598,484 - +0.1
598,547 + -0.5
598,566 + +0.8
598,567 - +0.3
598,610 + IAI46_02780 0.11 +0.4
598,610 + IAI46_02780 0.11 -0.9
598,610 + IAI46_02780 0.11 -0.4
598,611 - IAI46_02780 0.11 -0.2
598,612 + IAI46_02780 0.11 -0.7
598,612 + IAI46_02780 0.11 +0.6
598,612 + IAI46_02780 0.11 -1.0
598,612 + IAI46_02780 0.11 +0.3
598,612 + IAI46_02780 0.11 +1.3
598,612 + IAI46_02780 0.11 +0.4
598,613 - IAI46_02780 0.11 +1.2
598,613 - IAI46_02780 0.11 -0.2
598,613 - IAI46_02780 0.11 -0.3
598,613 - IAI46_02780 0.11 +0.5
598,680 - IAI46_02780 0.17 -0.7
598,680 - IAI46_02780 0.17 -0.8
598,680 - IAI46_02780 0.17 +1.0
598,681 + IAI46_02780 0.17 +1.1
598,681 + IAI46_02780 0.17 -0.5
598,681 + IAI46_02780 0.17 -0.3
598,681 + IAI46_02780 0.17 +1.2
598,681 + IAI46_02780 0.17 +0.6
598,681 + IAI46_02780 0.17 -0.0
598,682 - IAI46_02780 0.17 -0.7
598,682 - IAI46_02780 0.17 +0.5
598,682 - IAI46_02780 0.17 +1.3
598,682 - IAI46_02780 0.17 -0.9
598,682 - IAI46_02780 0.17 +0.5
598,682 - IAI46_02780 0.17 -1.0
598,682 - IAI46_02780 0.17 +0.7
598,682 - IAI46_02780 0.17 +0.3
598,682 - IAI46_02780 0.17 -0.9
598,762 + IAI46_02780 0.24 +0.4
598,762 + IAI46_02780 0.24 -0.6
599,017 + IAI46_02780 0.47 -0.1
599,018 - IAI46_02780 0.47 +0.5
599,062 + IAI46_02780 0.51 -0.1
599,063 - IAI46_02780 0.51 +0.0
599,077 + IAI46_02780 0.52 +0.3
599,078 - IAI46_02780 0.52 +0.6
599,078 - IAI46_02780 0.52 -0.4
599,078 - IAI46_02780 0.52 +0.5
599,088 + IAI46_02780 0.53 -0.7
599,089 - IAI46_02780 0.53 +0.6
599,089 - IAI46_02780 0.53 -0.9
599,255 + IAI46_02780 0.68 -0.0
599,257 + IAI46_02780 0.68 -0.3
599,258 - IAI46_02780 0.68 +0.7
599,258 - IAI46_02780 0.68 +0.2
599,269 + IAI46_02780 0.69 -0.5
599,269 + IAI46_02780 0.69 +0.1
599,269 + IAI46_02780 0.69 -0.6
599,269 + IAI46_02780 0.69 +0.3
599,269 + IAI46_02780 0.69 +0.5
599,269 + IAI46_02780 0.69 +0.4
599,269 + IAI46_02780 0.69 +1.1
599,270 - IAI46_02780 0.69 +0.0
599,270 - IAI46_02780 0.69 +0.2
599,270 - IAI46_02780 0.69 +0.9
599,270 - IAI46_02780 0.69 +0.2
599,287 + IAI46_02780 0.70 -0.2
599,288 - IAI46_02780 0.71 -0.1
599,501 - IAI46_02780 0.89 +0.7
599,664 + +0.3
599,664 + +2.6
599,665 - -0.1
599,665 - +0.6
599,665 - +0.6
599,667 - -0.2
599,731 + -1.8
599,731 + +0.5
599,731 + -0.8
599,731 + -0.5
599,732 - -0.8
599,732 - +0.5
599,732 - -0.1
599,736 + -0.0
599,737 - -1.0
599,747 + -0.5
599,748 - -0.7
599,748 - +0.7
599,750 - +0.2
599,750 - -0.3
599,750 - +1.5
599,750 - +0.1
599,762 + -0.4
599,789 + -0.1
599,821 + -0.4
599,842 - +0.9
599,856 + +0.7
599,856 + +1.1
599,856 + +0.1
599,856 + -0.1
599,857 - -0.2
599,857 - +0.3
599,857 - +0.8
599,857 - -0.4
599,869 + -0.4
599,869 + +0.4
599,870 - +0.3
599,870 - +0.8
599,870 - -0.1
600,095 + IAI46_02785 0.19 -0.4
600,095 + IAI46_02785 0.19 +0.5
600,096 - IAI46_02785 0.19 +0.3
600,097 + IAI46_02785 0.19 +0.3
600,097 + IAI46_02785 0.19 -0.8
600,097 + IAI46_02785 0.19 -0.6
600,098 - IAI46_02785 0.19 +0.0
600,098 - IAI46_02785 0.19 +0.4
600,112 - IAI46_02785 0.21 -0.9
600,158 + IAI46_02785 0.27 +0.2
600,158 + IAI46_02785 0.27 -1.0
600,158 + IAI46_02785 0.27 +1.5
600,159 - IAI46_02785 0.27 -0.3
600,159 - IAI46_02785 0.27 -0.6
600,159 - IAI46_02785 0.27 -0.2
600,159 - IAI46_02785 0.27 -0.2
600,166 + IAI46_02785 0.28 +0.3
600,166 + IAI46_02785 0.28 +0.7
600,167 - IAI46_02785 0.28 +0.5
600,167 - IAI46_02785 0.28 -0.1
600,266 - IAI46_02785 0.41 -0.5
600,547 - IAI46_02785 0.78 +0.7

Or see this region's nucleotide sequence