Experiment: Cobalt chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02645 and IAI46_02650 are separated by 259 nucleotides IAI46_02650 and IAI46_02655 are separated by 134 nucleotides
IAI46_02645: IAI46_02645 - aspartate aminotransferase family protein, at 571,030 to 572,370
_02645
IAI46_02650: IAI46_02650 - LysR family transcriptional regulator, at 572,630 to 573,559
_02650
IAI46_02655: IAI46_02655 - iron-containing alcohol dehydrogenase, at 573,694 to 574,821
_02655
Position (kb) 572
573
574 Strain fitness (log2 ratio) -2
-1
0
1
2 at 571.670 kb on - strand, within IAI46_02645 at 571.863 kb on + strand, within IAI46_02645 at 571.864 kb on - strand, within IAI46_02645 at 571.905 kb on + strand, within IAI46_02645 at 571.916 kb on + strand, within IAI46_02645 at 571.935 kb on + strand, within IAI46_02645 at 572.036 kb on + strand, within IAI46_02645 at 572.036 kb on + strand, within IAI46_02645 at 572.036 kb on + strand, within IAI46_02645 at 572.037 kb on - strand, within IAI46_02645 at 572.089 kb on + strand, within IAI46_02645 at 572.089 kb on + strand, within IAI46_02645 at 572.090 kb on - strand, within IAI46_02645 at 572.121 kb on - strand, within IAI46_02645 at 572.238 kb on + strand at 572.238 kb on + strand at 572.239 kb on - strand at 572.239 kb on - strand at 572.240 kb on + strand at 572.241 kb on - strand at 572.243 kb on + strand at 572.244 kb on - strand at 572.263 kb on + strand at 572.263 kb on + strand at 572.264 kb on - strand at 572.324 kb on - strand at 572.391 kb on + strand at 572.391 kb on + strand at 572.391 kb on + strand at 572.392 kb on - strand at 572.392 kb on - strand at 572.392 kb on - strand at 572.392 kb on - strand at 572.392 kb on - strand at 572.392 kb on - strand at 572.395 kb on + strand at 572.395 kb on + strand at 572.395 kb on + strand at 572.401 kb on + strand at 572.401 kb on + strand at 572.401 kb on + strand at 572.405 kb on + strand at 572.406 kb on - strand at 572.406 kb on - strand at 572.409 kb on + strand at 572.409 kb on + strand at 572.409 kb on + strand at 572.410 kb on - strand at 572.410 kb on - strand at 572.441 kb on + strand at 572.469 kb on - strand at 572.469 kb on - strand at 572.469 kb on - strand at 572.476 kb on + strand at 572.517 kb on - strand at 572.519 kb on - strand at 572.519 kb on - strand at 572.519 kb on - strand at 572.519 kb on - strand at 572.526 kb on - strand at 572.526 kb on - strand at 572.533 kb on - strand at 572.533 kb on - strand at 572.534 kb on + strand at 572.534 kb on + strand at 572.538 kb on + strand at 572.538 kb on + strand at 572.538 kb on + strand at 572.539 kb on - strand at 572.572 kb on + strand at 572.573 kb on - strand at 572.590 kb on + strand at 572.590 kb on + strand at 572.606 kb on - strand at 572.618 kb on - strand at 572.618 kb on - strand at 572.621 kb on + strand at 572.629 kb on + strand at 572.695 kb on - strand at 572.698 kb on + strand at 572.749 kb on + strand, within IAI46_02650 at 572.749 kb on + strand, within IAI46_02650 at 572.750 kb on - strand, within IAI46_02650 at 572.776 kb on + strand, within IAI46_02650 at 572.776 kb on + strand, within IAI46_02650 at 572.862 kb on + strand, within IAI46_02650 at 572.862 kb on + strand, within IAI46_02650 at 572.862 kb on + strand, within IAI46_02650 at 572.863 kb on - strand, within IAI46_02650 at 572.863 kb on - strand, within IAI46_02650 at 572.863 kb on - strand, within IAI46_02650 at 572.864 kb on + strand, within IAI46_02650 at 572.864 kb on + strand, within IAI46_02650 at 572.865 kb on - strand, within IAI46_02650 at 572.865 kb on - strand, within IAI46_02650 at 572.865 kb on - strand, within IAI46_02650 at 572.865 kb on - strand, within IAI46_02650 at 572.865 kb on - strand, within IAI46_02650 at 573.016 kb on - strand, within IAI46_02650 at 573.054 kb on - strand, within IAI46_02650 at 573.070 kb on + strand, within IAI46_02650 at 573.070 kb on + strand, within IAI46_02650 at 573.116 kb on - strand, within IAI46_02650 at 573.144 kb on + strand, within IAI46_02650 at 573.144 kb on + strand, within IAI46_02650 at 573.144 kb on + strand, within IAI46_02650 at 573.149 kb on + strand, within IAI46_02650 at 573.151 kb on + strand, within IAI46_02650 at 573.159 kb on + strand, within IAI46_02650 at 573.180 kb on + strand, within IAI46_02650 at 573.180 kb on + strand, within IAI46_02650 at 573.180 kb on + strand, within IAI46_02650 at 573.180 kb on + strand, within IAI46_02650 at 573.180 kb on + strand, within IAI46_02650 at 573.180 kb on + strand, within IAI46_02650 at 573.180 kb on + strand, within IAI46_02650 at 573.181 kb on - strand, within IAI46_02650 at 573.182 kb on + strand, within IAI46_02650 at 573.182 kb on + strand, within IAI46_02650 at 573.183 kb on - strand, within IAI46_02650 at 573.183 kb on - strand, within IAI46_02650 at 573.183 kb on - strand, within IAI46_02650 at 573.225 kb on + strand, within IAI46_02650 at 573.225 kb on + strand, within IAI46_02650 at 573.229 kb on + strand, within IAI46_02650 at 573.230 kb on - strand, within IAI46_02650 at 573.230 kb on - strand, within IAI46_02650 at 573.268 kb on - strand, within IAI46_02650 at 573.272 kb on + strand, within IAI46_02650 at 573.273 kb on - strand, within IAI46_02650 at 573.312 kb on + strand, within IAI46_02650 at 573.312 kb on + strand, within IAI46_02650 at 573.313 kb on - strand, within IAI46_02650 at 573.313 kb on - strand, within IAI46_02650 at 573.313 kb on - strand, within IAI46_02650 at 573.313 kb on - strand, within IAI46_02650 at 573.358 kb on - strand, within IAI46_02650 at 573.374 kb on + strand, within IAI46_02650 at 573.375 kb on - strand, within IAI46_02650 at 573.375 kb on - strand, within IAI46_02650 at 573.375 kb on - strand, within IAI46_02650 at 573.399 kb on - strand, within IAI46_02650 at 573.564 kb on + strand at 573.565 kb on - strand at 573.565 kb on - strand at 573.688 kb on - strand at 573.689 kb on + strand at 573.689 kb on + strand at 573.690 kb on - strand at 573.691 kb on + strand at 573.746 kb on + strand at 573.747 kb on - strand at 573.747 kb on - strand at 573.856 kb on - strand, within IAI46_02655 at 573.856 kb on - strand, within IAI46_02655 at 573.856 kb on - strand, within IAI46_02655 at 573.856 kb on - strand, within IAI46_02655 at 574.091 kb on + strand, within IAI46_02655 at 574.092 kb on - strand, within IAI46_02655 at 574.092 kb on - strand, within IAI46_02655 at 574.105 kb on - strand, within IAI46_02655 at 574.217 kb on + strand, within IAI46_02655 at 574.218 kb on - strand, within IAI46_02655 at 574.218 kb on - strand, within IAI46_02655 at 574.256 kb on + strand, within IAI46_02655 at 574.257 kb on - strand, within IAI46_02655 at 574.329 kb on + strand, within IAI46_02655 at 574.476 kb on + strand, within IAI46_02655 at 574.477 kb on - strand, within IAI46_02655 at 574.478 kb on + strand, within IAI46_02655 at 574.479 kb on - strand, within IAI46_02655 at 574.558 kb on + strand, within IAI46_02655
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic remove 571,670 - IAI46_02645 0.48 -0.2 571,863 + IAI46_02645 0.62 -0.2 571,864 - IAI46_02645 0.62 -1.9 571,905 + IAI46_02645 0.65 -0.2 571,916 + IAI46_02645 0.66 -1.0 571,935 + IAI46_02645 0.67 +1.0 572,036 + IAI46_02645 0.75 +0.6 572,036 + IAI46_02645 0.75 +0.3 572,036 + IAI46_02645 0.75 +1.0 572,037 - IAI46_02645 0.75 +0.1 572,089 + IAI46_02645 0.79 +1.1 572,089 + IAI46_02645 0.79 +0.0 572,090 - IAI46_02645 0.79 +0.8 572,121 - IAI46_02645 0.81 +0.7 572,238 + +0.1 572,238 + -0.0 572,239 - -1.7 572,239 - -0.8 572,240 + -0.2 572,241 - +0.0 572,243 + +1.4 572,244 - +0.3 572,263 + -1.7 572,263 + +0.3 572,264 - -0.6 572,324 - +0.6 572,391 + +0.5 572,391 + -0.5 572,391 + -1.3 572,392 - -1.4 572,392 - -0.2 572,392 - +0.3 572,392 - -0.2 572,392 - -1.4 572,392 - +0.2 572,395 + +0.4 572,395 + -0.2 572,395 + +0.4 572,401 + +1.6 572,401 + -0.6 572,401 + -0.3 572,405 + +1.8 572,406 - -0.2 572,406 - -0.1 572,409 + +0.5 572,409 + -0.8 572,409 + -2.6 572,410 - +0.1 572,410 - +0.2 572,441 + +0.6 572,469 - -0.1 572,469 - -0.2 572,469 - -0.4 572,476 + +0.2 572,517 - -0.1 572,519 - +0.5 572,519 - +1.7 572,519 - +0.4 572,519 - +0.4 572,526 - +0.7 572,526 - +0.5 572,533 - +0.3 572,533 - -1.0 572,534 + +0.4 572,534 + -0.9 572,538 + -1.3 572,538 + +0.5 572,538 + -0.5 572,539 - -0.3 572,572 + +0.8 572,573 - +0.7 572,590 + -0.8 572,590 + +0.3 572,606 - +0.5 572,618 - +1.0 572,618 - +0.1 572,621 + -0.2 572,629 + +0.5 572,695 - -0.2 572,698 + +0.1 572,749 + IAI46_02650 0.13 +0.8 572,749 + IAI46_02650 0.13 +0.4 572,750 - IAI46_02650 0.13 -0.2 572,776 + IAI46_02650 0.16 +0.8 572,776 + IAI46_02650 0.16 -0.2 572,862 + IAI46_02650 0.25 +1.4 572,862 + IAI46_02650 0.25 -0.7 572,862 + IAI46_02650 0.25 -0.2 572,863 - IAI46_02650 0.25 -0.6 572,863 - IAI46_02650 0.25 +0.0 572,863 - IAI46_02650 0.25 +0.6 572,864 + IAI46_02650 0.25 +0.4 572,864 + IAI46_02650 0.25 +0.5 572,865 - IAI46_02650 0.25 +0.3 572,865 - IAI46_02650 0.25 +0.3 572,865 - IAI46_02650 0.25 +0.8 572,865 - IAI46_02650 0.25 +0.1 572,865 - IAI46_02650 0.25 +0.8 573,016 - IAI46_02650 0.42 +0.1 573,054 - IAI46_02650 0.46 -0.7 573,070 + IAI46_02650 0.47 +0.2 573,070 + IAI46_02650 0.47 -0.3 573,116 - IAI46_02650 0.52 -0.2 573,144 + IAI46_02650 0.55 +1.4 573,144 + IAI46_02650 0.55 +0.2 573,144 + IAI46_02650 0.55 +0.5 573,149 + IAI46_02650 0.56 -0.7 573,151 + IAI46_02650 0.56 -0.3 573,159 + IAI46_02650 0.57 -0.8 573,180 + IAI46_02650 0.59 -1.0 573,180 + IAI46_02650 0.59 -1.3 573,180 + IAI46_02650 0.59 -0.4 573,180 + IAI46_02650 0.59 -0.0 573,180 + IAI46_02650 0.59 -0.4 573,180 + IAI46_02650 0.59 -0.2 573,180 + IAI46_02650 0.59 -0.1 573,181 - IAI46_02650 0.59 +0.3 573,182 + IAI46_02650 0.59 +0.5 573,182 + IAI46_02650 0.59 +2.3 573,183 - IAI46_02650 0.59 -1.0 573,183 - IAI46_02650 0.59 +1.3 573,183 - IAI46_02650 0.59 +0.4 573,225 + IAI46_02650 0.64 -0.3 573,225 + IAI46_02650 0.64 +0.1 573,229 + IAI46_02650 0.64 -1.3 573,230 - IAI46_02650 0.65 +0.2 573,230 - IAI46_02650 0.65 -0.5 573,268 - IAI46_02650 0.69 +1.6 573,272 + IAI46_02650 0.69 +0.2 573,273 - IAI46_02650 0.69 -0.4 573,312 + IAI46_02650 0.73 -0.4 573,312 + IAI46_02650 0.73 -0.3 573,313 - IAI46_02650 0.73 +1.1 573,313 - IAI46_02650 0.73 -0.5 573,313 - IAI46_02650 0.73 -0.2 573,313 - IAI46_02650 0.73 +0.3 573,358 - IAI46_02650 0.78 -1.7 573,374 + IAI46_02650 0.80 +1.2 573,375 - IAI46_02650 0.80 +0.7 573,375 - IAI46_02650 0.80 +0.3 573,375 - IAI46_02650 0.80 +0.5 573,399 - IAI46_02650 0.83 -0.3 573,564 + -1.1 573,565 - +0.3 573,565 - +0.5 573,688 - +0.1 573,689 + +0.1 573,689 + -0.8 573,690 - +0.4 573,691 + +0.7 573,746 + +0.5 573,747 - +0.5 573,747 - +1.0 573,856 - IAI46_02655 0.14 -0.3 573,856 - IAI46_02655 0.14 +0.0 573,856 - IAI46_02655 0.14 -0.8 573,856 - IAI46_02655 0.14 +0.3 574,091 + IAI46_02655 0.35 -0.6 574,092 - IAI46_02655 0.35 -0.4 574,092 - IAI46_02655 0.35 +0.4 574,105 - IAI46_02655 0.36 +0.1 574,217 + IAI46_02655 0.46 +0.4 574,218 - IAI46_02655 0.46 +0.6 574,218 - IAI46_02655 0.46 -0.0 574,256 + IAI46_02655 0.50 -2.3 574,257 - IAI46_02655 0.50 +0.2 574,329 + IAI46_02655 0.56 +0.3 574,476 + IAI46_02655 0.69 -0.1 574,477 - IAI46_02655 0.69 -0.2 574,478 + IAI46_02655 0.70 +0.4 574,479 - IAI46_02655 0.70 +0.7 574,558 + IAI46_02655 0.77 +0.1
Or see this region's nucleotide sequence