Experiment: Cobalt chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02555 and IAI46_02560 are separated by 33 nucleotides IAI46_02560 and IAI46_02565 are separated by 258 nucleotides IAI46_02565 and IAI46_02570 are separated by 104 nucleotides
IAI46_02555: IAI46_02555 - trehalose-6-phosphate synthase, at 551,453 to 552,163
_02555
IAI46_02560: IAI46_02560 - glutamine synthetase, at 552,197 to 553,576
_02560
IAI46_02565: IAI46_02565 - hypothetical protein, at 553,835 to 554,149
_02565
IAI46_02570: IAI46_02570 - helix-turn-helix transcriptional regulator, at 554,254 to 554,553
_02570
Position (kb) 552
553
554 Strain fitness (log2 ratio) -2
-1
0
1
2 at 551.241 kb on + strand at 551.241 kb on + strand at 551.242 kb on - strand at 551.242 kb on - strand at 551.245 kb on + strand at 551.245 kb on + strand at 551.245 kb on + strand at 551.245 kb on + strand at 551.245 kb on + strand at 551.245 kb on + strand at 551.245 kb on + strand at 551.246 kb on - strand at 551.246 kb on - strand at 551.246 kb on - strand at 551.249 kb on + strand at 551.249 kb on + strand at 551.249 kb on + strand at 551.250 kb on - strand at 551.250 kb on - strand at 551.250 kb on - strand at 551.250 kb on - strand at 551.298 kb on - strand at 551.371 kb on + strand at 551.371 kb on + strand at 551.371 kb on + strand at 551.372 kb on - strand at 551.373 kb on + strand at 551.374 kb on - strand at 551.553 kb on + strand, within IAI46_02555 at 551.568 kb on + strand, within IAI46_02555 at 551.619 kb on + strand, within IAI46_02555 at 551.639 kb on + strand, within IAI46_02555 at 551.763 kb on + strand, within IAI46_02555 at 551.773 kb on + strand, within IAI46_02555 at 551.774 kb on - strand, within IAI46_02555 at 551.797 kb on + strand, within IAI46_02555 at 551.798 kb on - strand, within IAI46_02555 at 551.798 kb on - strand, within IAI46_02555 at 551.798 kb on - strand, within IAI46_02555 at 551.799 kb on + strand, within IAI46_02555 at 551.850 kb on + strand, within IAI46_02555 at 551.917 kb on - strand, within IAI46_02555 at 551.919 kb on + strand, within IAI46_02555 at 551.919 kb on + strand, within IAI46_02555 at 551.919 kb on + strand, within IAI46_02555 at 551.920 kb on - strand, within IAI46_02555 at 551.920 kb on - strand, within IAI46_02555 at 551.920 kb on - strand, within IAI46_02555 at 551.929 kb on - strand, within IAI46_02555 at 552.032 kb on + strand, within IAI46_02555 at 552.032 kb on + strand, within IAI46_02555 at 552.032 kb on + strand, within IAI46_02555 at 552.032 kb on + strand, within IAI46_02555 at 552.033 kb on - strand, within IAI46_02555 at 552.033 kb on - strand, within IAI46_02555 at 552.137 kb on - strand at 552.184 kb on + strand at 552.199 kb on - strand at 552.199 kb on - strand at 552.315 kb on - strand at 552.330 kb on - strand at 552.435 kb on + strand, within IAI46_02560 at 552.436 kb on - strand, within IAI46_02560 at 552.436 kb on - strand, within IAI46_02560 at 552.436 kb on - strand, within IAI46_02560 at 552.471 kb on + strand, within IAI46_02560 at 552.639 kb on - strand, within IAI46_02560 at 552.805 kb on + strand, within IAI46_02560 at 552.806 kb on - strand, within IAI46_02560 at 552.806 kb on - strand, within IAI46_02560 at 552.806 kb on - strand, within IAI46_02560 at 552.918 kb on + strand, within IAI46_02560 at 552.919 kb on - strand, within IAI46_02560 at 553.089 kb on + strand, within IAI46_02560 at 553.089 kb on + strand, within IAI46_02560 at 553.090 kb on - strand, within IAI46_02560 at 553.122 kb on + strand, within IAI46_02560 at 553.353 kb on + strand, within IAI46_02560 at 553.354 kb on - strand, within IAI46_02560 at 553.354 kb on - strand, within IAI46_02560 at 553.354 kb on - strand, within IAI46_02560 at 553.371 kb on + strand, within IAI46_02560 at 553.371 kb on + strand, within IAI46_02560 at 553.372 kb on - strand, within IAI46_02560 at 553.372 kb on - strand, within IAI46_02560 at 553.382 kb on - strand, within IAI46_02560 at 553.449 kb on + strand at 553.449 kb on + strand at 553.484 kb on + strand at 553.484 kb on + strand at 553.484 kb on + strand at 553.485 kb on - strand at 553.485 kb on - strand at 553.488 kb on + strand at 553.488 kb on + strand at 553.488 kb on + strand at 553.489 kb on - strand at 553.535 kb on - strand at 553.562 kb on - strand at 553.562 kb on - strand at 553.567 kb on + strand at 553.633 kb on - strand at 553.657 kb on - strand at 553.675 kb on + strand at 553.675 kb on + strand at 553.675 kb on + strand at 553.675 kb on + strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.684 kb on + strand at 553.685 kb on - strand at 553.710 kb on - strand at 553.721 kb on - strand at 553.752 kb on + strand at 553.752 kb on + strand at 553.752 kb on + strand at 553.752 kb on + strand at 553.752 kb on + strand at 553.752 kb on + strand at 553.753 kb on - strand at 553.753 kb on - strand at 553.786 kb on - strand at 553.786 kb on - strand at 553.797 kb on + strand at 553.797 kb on + strand at 553.797 kb on + strand at 553.797 kb on + strand at 553.798 kb on - strand at 553.798 kb on - strand at 553.798 kb on - strand at 553.798 kb on - strand at 553.798 kb on - strand at 553.798 kb on - strand at 553.799 kb on + strand at 553.799 kb on + strand at 553.799 kb on + strand at 553.799 kb on + strand at 553.799 kb on + strand at 553.800 kb on - strand at 553.800 kb on - strand at 553.817 kb on + strand at 553.834 kb on - strand at 553.995 kb on - strand, within IAI46_02565 at 553.995 kb on - strand, within IAI46_02565 at 554.059 kb on + strand, within IAI46_02565 at 554.059 kb on + strand, within IAI46_02565 at 554.060 kb on - strand, within IAI46_02565 at 554.148 kb on - strand at 554.227 kb on - strand at 554.236 kb on + strand at 554.236 kb on + strand at 554.248 kb on - strand at 554.248 kb on - strand at 554.251 kb on + strand at 554.251 kb on + strand at 554.251 kb on + strand at 554.251 kb on + strand at 554.251 kb on + strand at 554.251 kb on + strand at 554.251 kb on + strand at 554.252 kb on - strand at 554.252 kb on - strand at 554.252 kb on - strand at 554.252 kb on - strand at 554.252 kb on - strand at 554.252 kb on - strand at 554.295 kb on + strand, within IAI46_02570 at 554.296 kb on - strand, within IAI46_02570 at 554.296 kb on - strand, within IAI46_02570 at 554.296 kb on - strand, within IAI46_02570 at 554.348 kb on + strand, within IAI46_02570 at 554.348 kb on + strand, within IAI46_02570 at 554.348 kb on + strand, within IAI46_02570 at 554.348 kb on + strand, within IAI46_02570 at 554.349 kb on - strand, within IAI46_02570 at 554.349 kb on - strand, within IAI46_02570 at 554.349 kb on - strand, within IAI46_02570 at 554.349 kb on - strand, within IAI46_02570 at 554.350 kb on + strand, within IAI46_02570 at 554.350 kb on + strand, within IAI46_02570 at 554.350 kb on + strand, within IAI46_02570 at 554.350 kb on + strand, within IAI46_02570 at 554.350 kb on + strand, within IAI46_02570 at 554.350 kb on + strand, within IAI46_02570 at 554.351 kb on - strand, within IAI46_02570 at 554.351 kb on - strand, within IAI46_02570 at 554.351 kb on - strand, within IAI46_02570 at 554.351 kb on - strand, within IAI46_02570 at 554.373 kb on + strand, within IAI46_02570 at 554.373 kb on + strand, within IAI46_02570 at 554.407 kb on - strand, within IAI46_02570 at 554.407 kb on - strand, within IAI46_02570 at 554.432 kb on + strand, within IAI46_02570 at 554.432 kb on + strand, within IAI46_02570 at 554.469 kb on - strand, within IAI46_02570 at 554.476 kb on + strand, within IAI46_02570
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic remove 551,241 + -0.1 551,241 + +0.6 551,242 - +0.2 551,242 - +0.8 551,245 + +0.7 551,245 + +0.1 551,245 + -1.0 551,245 + +0.4 551,245 + +0.1 551,245 + +1.2 551,245 + -0.3 551,246 - -0.3 551,246 - +0.4 551,246 - +0.2 551,249 + +0.4 551,249 + -0.6 551,249 + -1.3 551,250 - -0.1 551,250 - +0.7 551,250 - +0.4 551,250 - -0.4 551,298 - +0.5 551,371 + +0.4 551,371 + -0.3 551,371 + +1.2 551,372 - +0.2 551,373 + +2.6 551,374 - +0.6 551,553 + IAI46_02555 0.14 -0.3 551,568 + IAI46_02555 0.16 +0.4 551,619 + IAI46_02555 0.23 +0.4 551,639 + IAI46_02555 0.26 +1.2 551,763 + IAI46_02555 0.44 -1.7 551,773 + IAI46_02555 0.45 -0.5 551,774 - IAI46_02555 0.45 -0.9 551,797 + IAI46_02555 0.48 -0.4 551,798 - IAI46_02555 0.49 +0.5 551,798 - IAI46_02555 0.49 +0.3 551,798 - IAI46_02555 0.49 +0.3 551,799 + IAI46_02555 0.49 -0.1 551,850 + IAI46_02555 0.56 +1.0 551,917 - IAI46_02555 0.65 -0.2 551,919 + IAI46_02555 0.66 -0.0 551,919 + IAI46_02555 0.66 -1.6 551,919 + IAI46_02555 0.66 +0.0 551,920 - IAI46_02555 0.66 -0.4 551,920 - IAI46_02555 0.66 -1.9 551,920 - IAI46_02555 0.66 +0.3 551,929 - IAI46_02555 0.67 -0.4 552,032 + IAI46_02555 0.81 +0.3 552,032 + IAI46_02555 0.81 +0.8 552,032 + IAI46_02555 0.81 -0.1 552,032 + IAI46_02555 0.81 +0.5 552,033 - IAI46_02555 0.82 +0.7 552,033 - IAI46_02555 0.82 -0.6 552,137 - +1.0 552,184 + -0.7 552,199 - -0.7 552,199 - -1.1 552,315 - -0.5 552,330 - -0.2 552,435 + IAI46_02560 0.17 +0.6 552,436 - IAI46_02560 0.17 -0.1 552,436 - IAI46_02560 0.17 -0.2 552,436 - IAI46_02560 0.17 +0.2 552,471 + IAI46_02560 0.20 -1.4 552,639 - IAI46_02560 0.32 -1.8 552,805 + IAI46_02560 0.44 -0.5 552,806 - IAI46_02560 0.44 -1.2 552,806 - IAI46_02560 0.44 -1.0 552,806 - IAI46_02560 0.44 -0.4 552,918 + IAI46_02560 0.52 +1.4 552,919 - IAI46_02560 0.52 -0.1 553,089 + IAI46_02560 0.65 -0.4 553,089 + IAI46_02560 0.65 +0.5 553,090 - IAI46_02560 0.65 -0.1 553,122 + IAI46_02560 0.67 -0.1 553,353 + IAI46_02560 0.84 +1.0 553,354 - IAI46_02560 0.84 -0.5 553,354 - IAI46_02560 0.84 +2.0 553,354 - IAI46_02560 0.84 -1.0 553,371 + IAI46_02560 0.85 -1.6 553,371 + IAI46_02560 0.85 +0.9 553,372 - IAI46_02560 0.85 -0.4 553,372 - IAI46_02560 0.85 +0.1 553,382 - IAI46_02560 0.86 -2.7 553,449 + -0.4 553,449 + -0.3 553,484 + +0.4 553,484 + -0.5 553,484 + +0.9 553,485 - -1.0 553,485 - -0.5 553,488 + +1.1 553,488 + +0.1 553,488 + +0.2 553,489 - +0.3 553,535 - +0.9 553,562 - +1.2 553,562 - +0.4 553,567 + +0.6 553,633 - +0.1 553,657 - +0.1 553,675 + -0.1 553,675 + -1.1 553,675 + +0.6 553,675 + +0.6 553,676 - -0.1 553,676 - +0.3 553,676 - +0.8 553,676 - -0.0 553,676 - +0.5 553,676 - -0.3 553,676 - +0.1 553,676 - -1.7 553,684 + -0.3 553,685 - -0.0 553,710 - +0.1 553,721 - -0.4 553,752 + +0.0 553,752 + +0.3 553,752 + +0.1 553,752 + +0.6 553,752 + -0.3 553,752 + +0.3 553,753 - +0.2 553,753 - +0.2 553,786 - +0.2 553,786 - -1.3 553,797 + -0.0 553,797 + +0.2 553,797 + +0.1 553,797 + +1.1 553,798 - +0.2 553,798 - -1.1 553,798 - -1.5 553,798 - +0.6 553,798 - +0.4 553,798 - -0.3 553,799 + -0.1 553,799 + +1.1 553,799 + +0.8 553,799 + -0.5 553,799 + +0.1 553,800 - -0.1 553,800 - +0.5 553,817 + -0.9 553,834 - -0.9 553,995 - IAI46_02565 0.51 +0.0 553,995 - IAI46_02565 0.51 -0.5 554,059 + IAI46_02565 0.71 +0.1 554,059 + IAI46_02565 0.71 +0.4 554,060 - IAI46_02565 0.71 -1.6 554,148 - +0.4 554,227 - -1.2 554,236 + +0.2 554,236 + +0.6 554,248 - +0.4 554,248 - +0.8 554,251 + +0.3 554,251 + +0.3 554,251 + -0.0 554,251 + +0.6 554,251 + +1.9 554,251 + +0.9 554,251 + -1.5 554,252 - -0.2 554,252 - +1.4 554,252 - +0.3 554,252 - -0.5 554,252 - -0.9 554,252 - -2.2 554,295 + IAI46_02570 0.14 -0.7 554,296 - IAI46_02570 0.14 +0.3 554,296 - IAI46_02570 0.14 +1.2 554,296 - IAI46_02570 0.14 -0.1 554,348 + IAI46_02570 0.31 +0.6 554,348 + IAI46_02570 0.31 -0.2 554,348 + IAI46_02570 0.31 +1.4 554,348 + IAI46_02570 0.31 +0.2 554,349 - IAI46_02570 0.32 -0.4 554,349 - IAI46_02570 0.32 -0.1 554,349 - IAI46_02570 0.32 +0.3 554,349 - IAI46_02570 0.32 -0.1 554,350 + IAI46_02570 0.32 +0.0 554,350 + IAI46_02570 0.32 -0.0 554,350 + IAI46_02570 0.32 -0.7 554,350 + IAI46_02570 0.32 +1.3 554,350 + IAI46_02570 0.32 +0.4 554,350 + IAI46_02570 0.32 +0.2 554,351 - IAI46_02570 0.32 +0.9 554,351 - IAI46_02570 0.32 -1.0 554,351 - IAI46_02570 0.32 -0.0 554,351 - IAI46_02570 0.32 -0.0 554,373 + IAI46_02570 0.40 -0.1 554,373 + IAI46_02570 0.40 -0.6 554,407 - IAI46_02570 0.51 +0.7 554,407 - IAI46_02570 0.51 +0.7 554,432 + IAI46_02570 0.59 +1.2 554,432 + IAI46_02570 0.59 -0.0 554,469 - IAI46_02570 0.72 +0.2 554,476 + IAI46_02570 0.74 -0.0
Or see this region's nucleotide sequence