Strain Fitness in Serratia liquefaciens MT49 around IAI46_01540

Experiment: Cobalt chloride 80 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_01525 and IAI46_01530 overlap by 7 nucleotidesIAI46_01530 and IAI46_01535 are separated by 87 nucleotidesIAI46_01535 and IAI46_01540 are separated by 12 nucleotidesIAI46_01540 and IAI46_01545 are separated by 15 nucleotidesIAI46_01545 and IAI46_01550 overlap by 8 nucleotides IAI46_01525: IAI46_01525 - quaternary ammonium compound efflux SMR transporter SugE, at 336,196 to 336,513 _01525 IAI46_01530: IAI46_01530 - outer membrane lipoprotein Blc, at 336,507 to 337,040 _01530 IAI46_01535: IAI46_01535 - fumarate reductase subunit FrdD, at 337,128 to 337,487 _01535 IAI46_01540: IAI46_01540 - fumarate reductase subunit FrdC, at 337,500 to 337,892 _01540 IAI46_01545: IAI46_01545 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 337,908 to 338,642 _01545 IAI46_01550: IAI46_01550 - fumarate reductase (quinol) flavoprotein subunit, at 338,635 to 340,431 _01550 Position (kb) 337 338Strain fitness (log2 ratio) -2 -1 0 1 2at 336.537 kb on + strandat 336.537 kb on + strandat 336.537 kb on + strandat 336.538 kb on - strandat 336.538 kb on - strandat 336.542 kb on + strandat 336.543 kb on - strandat 336.579 kb on + strand, within IAI46_01530at 336.580 kb on - strand, within IAI46_01530at 336.625 kb on - strand, within IAI46_01530at 336.625 kb on - strand, within IAI46_01530at 336.634 kb on + strand, within IAI46_01530at 336.695 kb on + strand, within IAI46_01530at 336.695 kb on + strand, within IAI46_01530at 336.697 kb on + strand, within IAI46_01530at 336.698 kb on - strand, within IAI46_01530at 336.741 kb on + strand, within IAI46_01530at 336.763 kb on + strand, within IAI46_01530at 336.764 kb on - strand, within IAI46_01530at 336.806 kb on + strand, within IAI46_01530at 336.806 kb on + strand, within IAI46_01530at 336.806 kb on + strand, within IAI46_01530at 336.853 kb on + strand, within IAI46_01530at 336.854 kb on - strand, within IAI46_01530at 336.914 kb on - strand, within IAI46_01530at 336.928 kb on + strand, within IAI46_01530at 336.929 kb on - strand, within IAI46_01530at 336.929 kb on - strand, within IAI46_01530at 336.954 kb on + strand, within IAI46_01530at 336.954 kb on + strand, within IAI46_01530at 337.020 kb on + strandat 337.020 kb on + strandat 337.021 kb on - strandat 337.021 kb on - strandat 337.021 kb on - strandat 337.045 kb on + strandat 337.129 kb on + strandat 337.163 kb on + strandat 337.184 kb on - strand, within IAI46_01535at 337.184 kb on - strand, within IAI46_01535at 337.239 kb on + strand, within IAI46_01535at 337.239 kb on + strand, within IAI46_01535at 337.239 kb on + strand, within IAI46_01535at 337.240 kb on - strand, within IAI46_01535at 337.240 kb on - strand, within IAI46_01535at 337.272 kb on - strand, within IAI46_01535at 337.272 kb on - strand, within IAI46_01535at 337.333 kb on + strand, within IAI46_01535at 337.334 kb on - strand, within IAI46_01535at 337.470 kb on - strandat 337.470 kb on - strandat 337.483 kb on - strandat 337.568 kb on + strand, within IAI46_01540at 337.569 kb on - strand, within IAI46_01540at 337.604 kb on + strand, within IAI46_01540at 337.671 kb on + strand, within IAI46_01540at 337.672 kb on - strand, within IAI46_01540at 337.676 kb on + strand, within IAI46_01540at 337.676 kb on + strand, within IAI46_01540at 337.759 kb on + strand, within IAI46_01540at 337.814 kb on + strand, within IAI46_01540at 337.814 kb on + strand, within IAI46_01540at 337.814 kb on + strand, within IAI46_01540at 337.815 kb on - strand, within IAI46_01540at 337.816 kb on + strand, within IAI46_01540at 337.816 kb on + strand, within IAI46_01540at 337.816 kb on + strand, within IAI46_01540at 337.816 kb on + strand, within IAI46_01540at 337.816 kb on + strand, within IAI46_01540at 337.816 kb on + strand, within IAI46_01540at 337.816 kb on + strand, within IAI46_01540at 337.816 kb on + strand, within IAI46_01540at 337.817 kb on - strand, within IAI46_01540at 337.817 kb on - strand, within IAI46_01540at 337.871 kb on - strandat 337.877 kb on + strandat 337.877 kb on + strandat 337.877 kb on + strandat 337.877 kb on + strandat 337.878 kb on - strandat 337.878 kb on - strandat 337.878 kb on - strandat 337.878 kb on - strandat 337.909 kb on + strandat 337.910 kb on - strandat 337.970 kb on + strandat 338.027 kb on + strand, within IAI46_01545at 338.027 kb on + strand, within IAI46_01545at 338.028 kb on - strand, within IAI46_01545at 338.215 kb on + strand, within IAI46_01545at 338.284 kb on + strand, within IAI46_01545at 338.284 kb on + strand, within IAI46_01545at 338.284 kb on + strand, within IAI46_01545at 338.285 kb on - strand, within IAI46_01545at 338.285 kb on - strand, within IAI46_01545at 338.285 kb on - strand, within IAI46_01545at 338.292 kb on - strand, within IAI46_01545at 338.358 kb on - strand, within IAI46_01545at 338.358 kb on - strand, within IAI46_01545at 338.370 kb on + strand, within IAI46_01545at 338.371 kb on - strand, within IAI46_01545at 338.389 kb on + strand, within IAI46_01545at 338.516 kb on - strand, within IAI46_01545at 338.602 kb on + strandat 338.603 kb on - strandat 338.603 kb on - strandat 338.603 kb on - strandat 338.778 kb on + strandat 338.778 kb on + strandat 338.778 kb on + strandat 338.779 kb on - strandat 338.779 kb on - strandat 338.779 kb on - strandat 338.779 kb on - strandat 338.779 kb on - strandat 338.779 kb on - strandat 338.779 kb on - strandat 338.779 kb on - strandat 338.854 kb on - strand, within IAI46_01550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
remove
336,537 + -1.3
336,537 + -1.0
336,537 + -0.2
336,538 - -0.2
336,538 - -0.9
336,542 + -0.2
336,543 - +0.3
336,579 + IAI46_01530 0.13 -0.9
336,580 - IAI46_01530 0.14 +1.0
336,625 - IAI46_01530 0.22 -0.1
336,625 - IAI46_01530 0.22 +0.4
336,634 + IAI46_01530 0.24 +0.0
336,695 + IAI46_01530 0.35 +1.2
336,695 + IAI46_01530 0.35 +0.2
336,697 + IAI46_01530 0.36 -0.0
336,698 - IAI46_01530 0.36 +0.9
336,741 + IAI46_01530 0.44 -0.1
336,763 + IAI46_01530 0.48 -0.2
336,764 - IAI46_01530 0.48 +0.5
336,806 + IAI46_01530 0.56 +0.5
336,806 + IAI46_01530 0.56 +0.4
336,806 + IAI46_01530 0.56 -0.2
336,853 + IAI46_01530 0.65 +0.3
336,854 - IAI46_01530 0.65 +0.4
336,914 - IAI46_01530 0.76 +0.1
336,928 + IAI46_01530 0.79 +0.1
336,929 - IAI46_01530 0.79 +0.4
336,929 - IAI46_01530 0.79 +0.8
336,954 + IAI46_01530 0.84 +0.7
336,954 + IAI46_01530 0.84 +0.5
337,020 + +0.5
337,020 + +0.1
337,021 - +0.5
337,021 - +0.6
337,021 - -1.0
337,045 + -1.5
337,129 + -0.1
337,163 + -0.7
337,184 - IAI46_01535 0.16 -1.1
337,184 - IAI46_01535 0.16 +0.8
337,239 + IAI46_01535 0.31 +0.6
337,239 + IAI46_01535 0.31 +0.7
337,239 + IAI46_01535 0.31 -0.3
337,240 - IAI46_01535 0.31 +0.4
337,240 - IAI46_01535 0.31 -1.1
337,272 - IAI46_01535 0.40 -0.1
337,272 - IAI46_01535 0.40 +0.3
337,333 + IAI46_01535 0.57 +0.0
337,334 - IAI46_01535 0.57 +0.7
337,470 - +0.3
337,470 - -0.6
337,483 - -1.3
337,568 + IAI46_01540 0.17 -0.7
337,569 - IAI46_01540 0.18 +0.3
337,604 + IAI46_01540 0.26 -0.5
337,671 + IAI46_01540 0.44 +0.1
337,672 - IAI46_01540 0.44 +0.6
337,676 + IAI46_01540 0.45 -0.4
337,676 + IAI46_01540 0.45 +0.2
337,759 + IAI46_01540 0.66 +0.6
337,814 + IAI46_01540 0.80 +0.3
337,814 + IAI46_01540 0.80 +0.7
337,814 + IAI46_01540 0.80 +0.1
337,815 - IAI46_01540 0.80 +2.7
337,816 + IAI46_01540 0.80 +0.7
337,816 + IAI46_01540 0.80 +0.8
337,816 + IAI46_01540 0.80 -0.2
337,816 + IAI46_01540 0.80 +0.4
337,816 + IAI46_01540 0.80 +1.3
337,816 + IAI46_01540 0.80 +1.2
337,816 + IAI46_01540 0.80 -2.1
337,816 + IAI46_01540 0.80 +0.5
337,817 - IAI46_01540 0.81 +0.2
337,817 - IAI46_01540 0.81 -0.3
337,871 - -1.1
337,877 + +0.5
337,877 + +0.2
337,877 + +0.5
337,877 + +0.3
337,878 - -0.6
337,878 - +1.9
337,878 - -1.3
337,878 - -0.4
337,909 + +0.8
337,910 - -2.1
337,970 + -0.3
338,027 + IAI46_01545 0.16 -1.0
338,027 + IAI46_01545 0.16 -0.4
338,028 - IAI46_01545 0.16 -0.5
338,215 + IAI46_01545 0.42 -0.1
338,284 + IAI46_01545 0.51 -0.8
338,284 + IAI46_01545 0.51 +0.4
338,284 + IAI46_01545 0.51 -0.3
338,285 - IAI46_01545 0.51 -0.5
338,285 - IAI46_01545 0.51 +0.4
338,285 - IAI46_01545 0.51 -0.3
338,292 - IAI46_01545 0.52 +0.5
338,358 - IAI46_01545 0.61 +0.9
338,358 - IAI46_01545 0.61 -0.2
338,370 + IAI46_01545 0.63 +0.5
338,371 - IAI46_01545 0.63 -0.3
338,389 + IAI46_01545 0.65 +0.0
338,516 - IAI46_01545 0.83 -0.1
338,602 + +0.1
338,603 - +1.7
338,603 - +0.2
338,603 - -0.5
338,778 + +0.1
338,778 + -0.3
338,778 + +0.3
338,779 - -0.1
338,779 - +0.6
338,779 - +1.1
338,779 - +0.4
338,779 - +1.2
338,779 - -0.8
338,779 - -0.1
338,779 - +1.1
338,854 - IAI46_01550 0.12 +0.2

Or see this region's nucleotide sequence