Strain Fitness in Serratia liquefaciens MT49 around IAI46_01370

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01365 and IAI46_01370 are separated by 650 nucleotidesIAI46_01370 and IAI46_01375 are separated by 72 nucleotidesIAI46_01375 and IAI46_01380 are separated by 37 nucleotidesIAI46_01380 and IAI46_01385 are separated by 196 nucleotides IAI46_01365: IAI46_01365 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 298,406 to 299,995 _01365 IAI46_01370: IAI46_01370 - 16S ribosomal RNA, at 300,646 to 302,190 _01370 IAI46_01375: IAI46_01375 - tRNA-Ile, at 302,263 to 302,339 _01375 IAI46_01380: IAI46_01380 - tRNA-Ala, at 302,377 to 302,452 _01380 IAI46_01385: IAI46_01385 - 23S ribosomal RNA, at 302,649 to 305,586 _01385 Position (kb) 300 301 302 303Strain fitness (log2 ratio) -3 -2 -1 0 1at 299.687 kb on + strand, within IAI46_01365at 299.687 kb on + strand, within IAI46_01365at 299.792 kb on + strand, within IAI46_01365at 299.849 kb on + strandat 299.849 kb on + strandat 299.850 kb on - strandat 300.025 kb on + strandat 300.056 kb on - strandat 300.056 kb on - strandat 300.056 kb on - strandat 300.056 kb on - strandat 300.056 kb on - strandat 300.056 kb on - strandat 300.056 kb on - strandat 300.056 kb on - strandat 300.062 kb on + strandat 300.063 kb on - strandat 300.063 kb on - strandat 300.063 kb on - strandat 300.064 kb on + strandat 300.064 kb on + strandat 300.065 kb on - strandat 300.065 kb on - strandat 300.065 kb on - strandat 300.065 kb on - strandat 300.085 kb on - strandat 300.085 kb on - strandat 300.085 kb on - strandat 300.085 kb on - strandat 300.086 kb on + strandat 300.086 kb on + strandat 300.086 kb on + strandat 300.115 kb on - strandat 300.233 kb on + strandat 300.234 kb on - strandat 300.234 kb on - strandat 300.235 kb on + strandat 300.235 kb on + strandat 300.236 kb on - strandat 300.286 kb on + strandat 300.287 kb on - strandat 300.315 kb on - strandat 300.317 kb on - strandat 300.317 kb on - strandat 300.317 kb on - strandat 300.317 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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299,687 + IAI46_01365 0.81 -2.0
299,687 + IAI46_01365 0.81 -3.4
299,792 + IAI46_01365 0.87 -2.4
299,849 + -1.4
299,849 + -2.1
299,850 - -0.2
300,025 + -0.2
300,056 - +0.5
300,056 - +0.3
300,056 - +0.3
300,056 - +0.2
300,056 - -0.2
300,056 - +0.5
300,056 - +0.5
300,056 - +0.4
300,062 + -3.1
300,063 - +0.5
300,063 - -0.6
300,063 - -0.6
300,064 + -0.9
300,064 + -1.4
300,065 - -0.5
300,065 - +1.3
300,065 - -1.0
300,065 - +0.2
300,085 - -0.2
300,085 - +0.7
300,085 - -0.1
300,085 - +0.4
300,086 + -0.4
300,086 + -2.0
300,086 + -1.8
300,115 - -0.3
300,233 + +0.8
300,234 - +0.1
300,234 - +1.3
300,235 + -0.2
300,235 + -0.5
300,236 - -1.8
300,286 + +0.5
300,287 - +0.5
300,315 - +0.1
300,317 - +1.6
300,317 - +0.8
300,317 - -0.4
300,317 - -0.3

Or see this region's nucleotide sequence