Strain Fitness in Serratia liquefaciens MT49 around IAI46_00795

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00785 and IAI46_00790 are separated by 11 nucleotidesIAI46_00790 and IAI46_00795 are separated by 35 nucleotidesIAI46_00795 and IAI46_00800 are separated by 83 nucleotides IAI46_00785: IAI46_00785 - lysophospholipase L2, at 178,417 to 179,454 _00785 IAI46_00790: IAI46_00790 - sugar/pyridoxal phosphate phosphatase YigL, at 179,466 to 180,266 _00790 IAI46_00795: IAI46_00795 - glycerophosphodiester phosphodiesterase, at 180,302 to 181,381 _00795 IAI46_00800: IAI46_00800 - glycerol-3-phosphate transporter, at 181,465 to 182,820 _00800 Position (kb) 180 181 182Strain fitness (log2 ratio) -2 -1 0 1at 179.414 kb on + strandat 179.414 kb on + strandat 179.415 kb on - strandat 179.415 kb on - strandat 179.415 kb on - strandat 179.415 kb on - strandat 179.415 kb on - strandat 179.422 kb on - strandat 179.453 kb on - strandat 179.460 kb on - strandat 179.460 kb on - strandat 179.460 kb on - strandat 179.465 kb on + strandat 179.465 kb on + strandat 179.465 kb on + strandat 179.465 kb on + strandat 179.465 kb on + strandat 179.465 kb on + strandat 179.466 kb on - strandat 179.466 kb on - strandat 179.466 kb on - strandat 179.466 kb on - strandat 179.469 kb on + strandat 179.469 kb on + strandat 179.491 kb on + strandat 179.491 kb on + strandat 179.491 kb on + strandat 179.491 kb on + strandat 179.491 kb on + strandat 179.492 kb on - strandat 179.740 kb on - strand, within IAI46_00790at 179.765 kb on + strand, within IAI46_00790at 179.799 kb on + strand, within IAI46_00790at 179.800 kb on - strand, within IAI46_00790at 179.907 kb on + strand, within IAI46_00790at 179.907 kb on + strand, within IAI46_00790at 179.908 kb on - strand, within IAI46_00790at 179.908 kb on - strand, within IAI46_00790at 179.908 kb on - strand, within IAI46_00790at 180.075 kb on + strand, within IAI46_00790at 180.077 kb on + strand, within IAI46_00790at 180.077 kb on + strand, within IAI46_00790at 180.077 kb on + strand, within IAI46_00790at 180.077 kb on + strand, within IAI46_00790at 180.078 kb on - strand, within IAI46_00790at 180.078 kb on - strand, within IAI46_00790at 180.078 kb on - strand, within IAI46_00790at 180.185 kb on + strand, within IAI46_00790at 180.186 kb on - strand, within IAI46_00790at 180.186 kb on - strand, within IAI46_00790at 180.241 kb on - strandat 180.241 kb on - strandat 180.241 kb on - strandat 180.241 kb on - strandat 180.241 kb on - strandat 180.267 kb on + strandat 180.268 kb on - strandat 180.268 kb on - strandat 180.300 kb on + strandat 180.300 kb on + strandat 180.301 kb on - strandat 180.301 kb on - strandat 180.303 kb on + strandat 180.303 kb on + strandat 180.304 kb on - strandat 180.387 kb on + strandat 180.399 kb on + strandat 180.399 kb on + strandat 180.399 kb on + strandat 180.423 kb on + strand, within IAI46_00795at 180.423 kb on + strand, within IAI46_00795at 180.552 kb on + strand, within IAI46_00795at 180.552 kb on + strand, within IAI46_00795at 180.552 kb on + strand, within IAI46_00795at 180.553 kb on - strand, within IAI46_00795at 180.553 kb on - strand, within IAI46_00795at 180.621 kb on + strand, within IAI46_00795at 180.622 kb on - strand, within IAI46_00795at 180.622 kb on - strand, within IAI46_00795at 180.627 kb on + strand, within IAI46_00795at 180.627 kb on + strand, within IAI46_00795at 180.628 kb on - strand, within IAI46_00795at 180.660 kb on + strand, within IAI46_00795at 180.682 kb on - strand, within IAI46_00795at 180.682 kb on - strand, within IAI46_00795at 180.682 kb on - strand, within IAI46_00795at 180.682 kb on - strand, within IAI46_00795at 180.682 kb on - strand, within IAI46_00795at 180.739 kb on + strand, within IAI46_00795at 180.739 kb on + strand, within IAI46_00795at 180.740 kb on - strand, within IAI46_00795at 180.777 kb on + strand, within IAI46_00795at 180.778 kb on - strand, within IAI46_00795at 180.778 kb on - strand, within IAI46_00795at 180.801 kb on + strand, within IAI46_00795at 180.801 kb on + strand, within IAI46_00795at 180.859 kb on + strand, within IAI46_00795at 180.860 kb on - strand, within IAI46_00795at 180.860 kb on - strand, within IAI46_00795at 180.860 kb on - strand, within IAI46_00795at 180.892 kb on + strand, within IAI46_00795at 180.892 kb on + strand, within IAI46_00795at 180.893 kb on - strand, within IAI46_00795at 180.893 kb on - strand, within IAI46_00795at 180.955 kb on + strand, within IAI46_00795at 180.955 kb on + strand, within IAI46_00795at 180.955 kb on + strand, within IAI46_00795at 180.955 kb on + strand, within IAI46_00795at 180.999 kb on + strand, within IAI46_00795at 181.007 kb on + strand, within IAI46_00795at 181.008 kb on - strand, within IAI46_00795at 181.008 kb on - strand, within IAI46_00795at 181.073 kb on - strand, within IAI46_00795at 181.073 kb on - strand, within IAI46_00795at 181.086 kb on + strand, within IAI46_00795at 181.086 kb on + strand, within IAI46_00795at 181.086 kb on + strand, within IAI46_00795at 181.086 kb on + strand, within IAI46_00795at 181.087 kb on - strand, within IAI46_00795at 181.090 kb on - strand, within IAI46_00795at 181.131 kb on - strand, within IAI46_00795at 181.131 kb on - strand, within IAI46_00795at 181.230 kb on + strand, within IAI46_00795at 181.230 kb on + strand, within IAI46_00795at 181.346 kb on - strandat 181.346 kb on - strandat 181.381 kb on + strandat 181.382 kb on - strandat 181.382 kb on - strandat 181.401 kb on + strandat 181.401 kb on + strandat 181.401 kb on + strandat 181.402 kb on - strandat 181.402 kb on - strandat 181.402 kb on - strandat 181.414 kb on - strandat 181.414 kb on - strandat 181.417 kb on - strandat 181.417 kb on - strandat 181.417 kb on - strandat 181.457 kb on + strandat 181.457 kb on + strandat 181.551 kb on + strandat 181.569 kb on + strandat 181.569 kb on + strandat 181.570 kb on - strandat 181.592 kb on + strandat 181.592 kb on + strandat 181.593 kb on - strandat 181.593 kb on - strandat 181.604 kb on + strand, within IAI46_00800at 181.761 kb on + strand, within IAI46_00800at 181.761 kb on + strand, within IAI46_00800at 181.761 kb on + strand, within IAI46_00800at 181.762 kb on - strand, within IAI46_00800at 181.762 kb on - strand, within IAI46_00800at 181.762 kb on - strand, within IAI46_00800at 181.762 kb on - strand, within IAI46_00800at 181.762 kb on - strand, within IAI46_00800at 181.762 kb on - strand, within IAI46_00800at 181.771 kb on - strand, within IAI46_00800at 181.922 kb on + strand, within IAI46_00800at 181.923 kb on - strand, within IAI46_00800at 181.928 kb on + strand, within IAI46_00800at 181.929 kb on - strand, within IAI46_00800at 181.937 kb on + strand, within IAI46_00800at 181.937 kb on + strand, within IAI46_00800at 181.938 kb on - strand, within IAI46_00800at 181.938 kb on - strand, within IAI46_00800at 181.938 kb on - strand, within IAI46_00800at 181.938 kb on - strand, within IAI46_00800at 181.985 kb on + strand, within IAI46_00800at 182.025 kb on - strand, within IAI46_00800at 182.037 kb on + strand, within IAI46_00800at 182.038 kb on - strand, within IAI46_00800at 182.038 kb on - strand, within IAI46_00800at 182.038 kb on - strand, within IAI46_00800at 182.042 kb on - strand, within IAI46_00800at 182.051 kb on + strand, within IAI46_00800at 182.052 kb on - strand, within IAI46_00800at 182.078 kb on + strand, within IAI46_00800at 182.078 kb on + strand, within IAI46_00800at 182.079 kb on - strand, within IAI46_00800at 182.079 kb on - strand, within IAI46_00800at 182.079 kb on - strand, within IAI46_00800at 182.130 kb on - strand, within IAI46_00800at 182.153 kb on + strand, within IAI46_00800at 182.222 kb on - strand, within IAI46_00800at 182.249 kb on + strand, within IAI46_00800at 182.250 kb on - strand, within IAI46_00800at 182.250 kb on - strand, within IAI46_00800at 182.326 kb on - strand, within IAI46_00800

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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179,414 + +0.1
179,414 + +0.9
179,415 - -1.8
179,415 - -1.1
179,415 - +0.0
179,415 - -1.3
179,415 - -0.0
179,422 - +0.0
179,453 - -0.3
179,460 - +1.1
179,460 - +0.5
179,460 - -0.1
179,465 + +0.6
179,465 + +0.5
179,465 + -0.3
179,465 + +0.7
179,465 + +0.1
179,465 + -0.4
179,466 - +0.6
179,466 - -0.8
179,466 - +1.1
179,466 - +0.2
179,469 + +0.1
179,469 + -0.0
179,491 + +1.5
179,491 + -0.2
179,491 + -0.7
179,491 + +0.2
179,491 + -1.8
179,492 - +0.8
179,740 - IAI46_00790 0.34 +0.1
179,765 + IAI46_00790 0.37 -0.2
179,799 + IAI46_00790 0.42 -0.5
179,800 - IAI46_00790 0.42 -1.2
179,907 + IAI46_00790 0.55 +0.4
179,907 + IAI46_00790 0.55 -0.6
179,908 - IAI46_00790 0.55 +0.3
179,908 - IAI46_00790 0.55 +0.1
179,908 - IAI46_00790 0.55 +1.1
180,075 + IAI46_00790 0.76 -0.9
180,077 + IAI46_00790 0.76 -0.6
180,077 + IAI46_00790 0.76 -0.6
180,077 + IAI46_00790 0.76 +0.9
180,077 + IAI46_00790 0.76 -0.2
180,078 - IAI46_00790 0.76 +1.2
180,078 - IAI46_00790 0.76 -0.3
180,078 - IAI46_00790 0.76 -0.9
180,185 + IAI46_00790 0.90 +0.5
180,186 - IAI46_00790 0.90 +0.6
180,186 - IAI46_00790 0.90 +0.3
180,241 - -0.4
180,241 - +0.6
180,241 - +0.6
180,241 - -0.1
180,241 - +0.7
180,267 + -0.8
180,268 - +0.5
180,268 - +0.3
180,300 + +0.3
180,300 + +0.0
180,301 - +0.1
180,301 - +0.6
180,303 + -0.5
180,303 + +0.5
180,304 - +0.0
180,387 + +0.7
180,399 + -0.2
180,399 + -1.1
180,399 + +1.4
180,423 + IAI46_00795 0.11 -0.7
180,423 + IAI46_00795 0.11 +1.4
180,552 + IAI46_00795 0.23 +0.4
180,552 + IAI46_00795 0.23 +0.5
180,552 + IAI46_00795 0.23 -0.1
180,553 - IAI46_00795 0.23 +1.6
180,553 - IAI46_00795 0.23 +0.9
180,621 + IAI46_00795 0.30 +0.3
180,622 - IAI46_00795 0.30 +0.4
180,622 - IAI46_00795 0.30 +0.1
180,627 + IAI46_00795 0.30 -1.5
180,627 + IAI46_00795 0.30 -1.3
180,628 - IAI46_00795 0.30 +0.0
180,660 + IAI46_00795 0.33 +0.7
180,682 - IAI46_00795 0.35 +0.2
180,682 - IAI46_00795 0.35 -0.2
180,682 - IAI46_00795 0.35 -2.3
180,682 - IAI46_00795 0.35 +0.0
180,682 - IAI46_00795 0.35 +0.2
180,739 + IAI46_00795 0.40 -0.1
180,739 + IAI46_00795 0.40 -0.1
180,740 - IAI46_00795 0.41 +0.4
180,777 + IAI46_00795 0.44 -0.9
180,778 - IAI46_00795 0.44 +0.8
180,778 - IAI46_00795 0.44 -0.1
180,801 + IAI46_00795 0.46 -0.8
180,801 + IAI46_00795 0.46 -0.2
180,859 + IAI46_00795 0.52 -0.7
180,860 - IAI46_00795 0.52 +0.3
180,860 - IAI46_00795 0.52 -0.1
180,860 - IAI46_00795 0.52 +0.8
180,892 + IAI46_00795 0.55 -0.2
180,892 + IAI46_00795 0.55 -0.8
180,893 - IAI46_00795 0.55 -0.1
180,893 - IAI46_00795 0.55 +0.3
180,955 + IAI46_00795 0.60 +1.3
180,955 + IAI46_00795 0.60 -1.2
180,955 + IAI46_00795 0.60 +0.9
180,955 + IAI46_00795 0.60 +0.4
180,999 + IAI46_00795 0.65 +0.2
181,007 + IAI46_00795 0.65 +0.4
181,008 - IAI46_00795 0.65 -0.7
181,008 - IAI46_00795 0.65 -0.6
181,073 - IAI46_00795 0.71 +0.9
181,073 - IAI46_00795 0.71 -0.1
181,086 + IAI46_00795 0.73 +1.0
181,086 + IAI46_00795 0.73 +0.4
181,086 + IAI46_00795 0.73 +0.7
181,086 + IAI46_00795 0.73 +0.2
181,087 - IAI46_00795 0.73 +0.7
181,090 - IAI46_00795 0.73 +0.5
181,131 - IAI46_00795 0.77 +0.2
181,131 - IAI46_00795 0.77 +0.4
181,230 + IAI46_00795 0.86 +0.8
181,230 + IAI46_00795 0.86 -0.1
181,346 - -0.4
181,346 - -0.0
181,381 + -0.2
181,382 - -0.1
181,382 - -0.3
181,401 + -0.3
181,401 + +0.5
181,401 + +1.7
181,402 - +0.4
181,402 - -0.0
181,402 - +0.0
181,414 - +0.1
181,414 - +0.0
181,417 - +0.2
181,417 - -0.4
181,417 - +0.8
181,457 + -0.6
181,457 + -0.2
181,551 + -0.2
181,569 + +0.2
181,569 + +0.3
181,570 - +0.4
181,592 + -0.3
181,592 + +1.4
181,593 - +0.8
181,593 - +0.6
181,604 + IAI46_00800 0.10 +0.8
181,761 + IAI46_00800 0.22 +0.4
181,761 + IAI46_00800 0.22 -0.4
181,761 + IAI46_00800 0.22 -0.2
181,762 - IAI46_00800 0.22 +0.3
181,762 - IAI46_00800 0.22 -0.8
181,762 - IAI46_00800 0.22 +0.0
181,762 - IAI46_00800 0.22 +0.0
181,762 - IAI46_00800 0.22 +0.1
181,762 - IAI46_00800 0.22 -0.9
181,771 - IAI46_00800 0.23 -0.1
181,922 + IAI46_00800 0.34 -0.3
181,923 - IAI46_00800 0.34 -0.3
181,928 + IAI46_00800 0.34 -0.3
181,929 - IAI46_00800 0.34 -0.3
181,937 + IAI46_00800 0.35 -0.2
181,937 + IAI46_00800 0.35 +0.6
181,938 - IAI46_00800 0.35 -0.4
181,938 - IAI46_00800 0.35 +0.8
181,938 - IAI46_00800 0.35 +1.2
181,938 - IAI46_00800 0.35 -0.9
181,985 + IAI46_00800 0.38 +0.1
182,025 - IAI46_00800 0.41 -0.1
182,037 + IAI46_00800 0.42 +0.9
182,038 - IAI46_00800 0.42 +0.7
182,038 - IAI46_00800 0.42 +1.4
182,038 - IAI46_00800 0.42 +1.1
182,042 - IAI46_00800 0.43 +0.0
182,051 + IAI46_00800 0.43 -1.4
182,052 - IAI46_00800 0.43 +0.9
182,078 + IAI46_00800 0.45 -0.0
182,078 + IAI46_00800 0.45 -0.7
182,079 - IAI46_00800 0.45 +0.8
182,079 - IAI46_00800 0.45 -0.6
182,079 - IAI46_00800 0.45 -0.1
182,130 - IAI46_00800 0.49 +0.6
182,153 + IAI46_00800 0.51 -1.7
182,222 - IAI46_00800 0.56 -0.8
182,249 + IAI46_00800 0.58 +0.2
182,250 - IAI46_00800 0.58 +0.9
182,250 - IAI46_00800 0.58 +1.0
182,326 - IAI46_00800 0.63 +1.0

Or see this region's nucleotide sequence