Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4513

Experiment: m.b. Thallium(I) acetate 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4512 and Echvi_4513 are separated by 319 nucleotidesEchvi_4513 and Echvi_4514 overlap by 4 nucleotides Echvi_4512: Echvi_4512 - Transposase domain (DUF772)., at 5,388,311 to 5,389,679 _4512 Echvi_4513: Echvi_4513 - Domain of unknown function (DUF303)., at 5,389,999 to 5,391,447 _4513 Echvi_4514: Echvi_4514 - Ribulose kinase, at 5,391,444 to 5,393,117 _4514 Position (kb) 5389 5390 5391 5392Strain fitness (log2 ratio) -2 -1 0 1at 5389.256 kb on + strand, within Echvi_4512at 5389.861 kb on + strandat 5389.861 kb on + strandat 5389.861 kb on + strandat 5389.862 kb on - strandat 5389.862 kb on - strandat 5389.862 kb on - strandat 5389.862 kb on - strandat 5389.867 kb on + strandat 5389.867 kb on + strandat 5389.868 kb on - strandat 5389.889 kb on - strandat 5389.894 kb on + strandat 5389.900 kb on + strandat 5389.921 kb on + strandat 5389.942 kb on + strandat 5389.942 kb on + strandat 5389.959 kb on + strandat 5389.979 kb on + strandat 5389.979 kb on + strandat 5390.052 kb on - strandat 5390.052 kb on - strandat 5390.067 kb on + strandat 5390.067 kb on + strandat 5390.067 kb on + strandat 5390.068 kb on - strandat 5390.069 kb on + strandat 5390.069 kb on + strandat 5390.070 kb on - strandat 5390.070 kb on - strandat 5390.122 kb on + strandat 5390.169 kb on + strand, within Echvi_4513at 5390.172 kb on + strand, within Echvi_4513at 5390.172 kb on + strand, within Echvi_4513at 5390.173 kb on - strand, within Echvi_4513at 5390.173 kb on - strand, within Echvi_4513at 5390.205 kb on + strand, within Echvi_4513at 5390.206 kb on - strand, within Echvi_4513at 5390.305 kb on - strand, within Echvi_4513at 5390.305 kb on - strand, within Echvi_4513at 5390.325 kb on + strand, within Echvi_4513at 5390.354 kb on - strand, within Echvi_4513at 5390.359 kb on + strand, within Echvi_4513at 5390.360 kb on - strand, within Echvi_4513at 5390.416 kb on + strand, within Echvi_4513at 5390.510 kb on + strand, within Echvi_4513at 5390.510 kb on + strand, within Echvi_4513at 5390.511 kb on - strand, within Echvi_4513at 5390.514 kb on + strand, within Echvi_4513at 5390.515 kb on - strand, within Echvi_4513at 5390.532 kb on - strand, within Echvi_4513at 5390.550 kb on - strand, within Echvi_4513at 5390.552 kb on + strand, within Echvi_4513at 5390.552 kb on + strand, within Echvi_4513at 5390.553 kb on - strand, within Echvi_4513at 5390.625 kb on + strand, within Echvi_4513at 5390.626 kb on - strand, within Echvi_4513at 5390.658 kb on - strand, within Echvi_4513at 5390.686 kb on + strand, within Echvi_4513at 5390.687 kb on - strand, within Echvi_4513at 5390.687 kb on - strand, within Echvi_4513at 5390.709 kb on + strand, within Echvi_4513at 5390.709 kb on + strand, within Echvi_4513at 5390.709 kb on + strand, within Echvi_4513at 5390.709 kb on + strand, within Echvi_4513at 5390.709 kb on + strand, within Echvi_4513at 5390.709 kb on + strand, within Echvi_4513at 5390.709 kb on + strand, within Echvi_4513at 5390.709 kb on + strand, within Echvi_4513at 5390.709 kb on + strand, within Echvi_4513at 5390.710 kb on - strand, within Echvi_4513at 5390.710 kb on - strand, within Echvi_4513at 5390.711 kb on + strand, within Echvi_4513at 5390.711 kb on + strand, within Echvi_4513at 5390.711 kb on + strand, within Echvi_4513at 5390.713 kb on + strand, within Echvi_4513at 5390.714 kb on - strand, within Echvi_4513at 5390.714 kb on - strand, within Echvi_4513at 5390.721 kb on + strand, within Echvi_4513at 5390.721 kb on + strand, within Echvi_4513at 5390.721 kb on + strand, within Echvi_4513at 5390.721 kb on + strand, within Echvi_4513at 5390.754 kb on + strand, within Echvi_4513at 5390.875 kb on + strand, within Echvi_4513at 5390.880 kb on - strand, within Echvi_4513at 5390.891 kb on + strand, within Echvi_4513at 5390.994 kb on + strand, within Echvi_4513at 5390.994 kb on + strand, within Echvi_4513at 5390.995 kb on - strand, within Echvi_4513at 5391.016 kb on - strand, within Echvi_4513at 5391.026 kb on - strand, within Echvi_4513at 5391.028 kb on + strand, within Echvi_4513at 5391.029 kb on - strand, within Echvi_4513at 5391.029 kb on - strand, within Echvi_4513at 5391.063 kb on + strand, within Echvi_4513at 5391.063 kb on + strand, within Echvi_4513at 5391.063 kb on + strand, within Echvi_4513at 5391.063 kb on + strand, within Echvi_4513at 5391.064 kb on - strand, within Echvi_4513at 5391.087 kb on + strand, within Echvi_4513at 5391.127 kb on + strand, within Echvi_4513at 5391.128 kb on - strand, within Echvi_4513at 5391.128 kb on - strand, within Echvi_4513at 5391.148 kb on - strand, within Echvi_4513at 5391.235 kb on + strand, within Echvi_4513at 5391.236 kb on - strand, within Echvi_4513at 5391.339 kb on + strandat 5391.339 kb on + strandat 5391.391 kb on + strandat 5391.391 kb on + strandat 5391.392 kb on - strandat 5391.395 kb on - strandat 5391.493 kb on + strandat 5391.494 kb on - strandat 5391.500 kb on + strandat 5391.501 kb on - strandat 5391.502 kb on + strandat 5391.514 kb on + strandat 5391.515 kb on - strandat 5391.516 kb on + strandat 5391.517 kb on - strandat 5391.598 kb on + strandat 5391.598 kb on + strandat 5391.686 kb on + strand, within Echvi_4514at 5391.687 kb on - strand, within Echvi_4514at 5391.753 kb on + strand, within Echvi_4514at 5391.754 kb on - strand, within Echvi_4514at 5391.783 kb on + strand, within Echvi_4514at 5391.784 kb on - strand, within Echvi_4514at 5391.784 kb on - strand, within Echvi_4514at 5391.784 kb on - strand, within Echvi_4514at 5391.784 kb on - strand, within Echvi_4514at 5391.833 kb on + strand, within Echvi_4514at 5391.833 kb on + strand, within Echvi_4514at 5391.915 kb on + strand, within Echvi_4514at 5392.009 kb on - strand, within Echvi_4514at 5392.009 kb on - strand, within Echvi_4514at 5392.009 kb on - strand, within Echvi_4514at 5392.022 kb on + strand, within Echvi_4514at 5392.219 kb on - strand, within Echvi_4514at 5392.226 kb on + strand, within Echvi_4514at 5392.254 kb on - strand, within Echvi_4514at 5392.254 kb on - strand, within Echvi_4514at 5392.262 kb on + strand, within Echvi_4514at 5392.263 kb on - strand, within Echvi_4514at 5392.410 kb on + strand, within Echvi_4514at 5392.411 kb on - strand, within Echvi_4514at 5392.443 kb on + strand, within Echvi_4514at 5392.444 kb on - strand, within Echvi_4514

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.025 mg/ml
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5,389,256 + Echvi_4512 0.69 -1.0
5,389,861 + +0.5
5,389,861 + +0.3
5,389,861 + -0.3
5,389,862 - +0.4
5,389,862 - -0.3
5,389,862 - -1.3
5,389,862 - -0.1
5,389,867 + -1.2
5,389,867 + -0.6
5,389,868 - -0.7
5,389,889 - -0.2
5,389,894 + +0.4
5,389,900 + +0.6
5,389,921 + +1.2
5,389,942 + +0.3
5,389,942 + +0.4
5,389,959 + +0.9
5,389,979 + +0.1
5,389,979 + +0.0
5,390,052 - -0.3
5,390,052 - -0.3
5,390,067 + -0.6
5,390,067 + +0.2
5,390,067 + +0.4
5,390,068 - -0.5
5,390,069 + +1.2
5,390,069 + -0.8
5,390,070 - +0.9
5,390,070 - -0.3
5,390,122 + -0.1
5,390,169 + Echvi_4513 0.12 +0.2
5,390,172 + Echvi_4513 0.12 +1.0
5,390,172 + Echvi_4513 0.12 +0.2
5,390,173 - Echvi_4513 0.12 -1.4
5,390,173 - Echvi_4513 0.12 +0.5
5,390,205 + Echvi_4513 0.14 -0.8
5,390,206 - Echvi_4513 0.14 +0.0
5,390,305 - Echvi_4513 0.21 +0.4
5,390,305 - Echvi_4513 0.21 -0.6
5,390,325 + Echvi_4513 0.22 +0.1
5,390,354 - Echvi_4513 0.24 -0.3
5,390,359 + Echvi_4513 0.25 +0.5
5,390,360 - Echvi_4513 0.25 -1.5
5,390,416 + Echvi_4513 0.29 +0.4
5,390,510 + Echvi_4513 0.35 -0.8
5,390,510 + Echvi_4513 0.35 -0.5
5,390,511 - Echvi_4513 0.35 -1.0
5,390,514 + Echvi_4513 0.36 +0.2
5,390,515 - Echvi_4513 0.36 -0.4
5,390,532 - Echvi_4513 0.37 -0.1
5,390,550 - Echvi_4513 0.38 -0.7
5,390,552 + Echvi_4513 0.38 +0.2
5,390,552 + Echvi_4513 0.38 +0.1
5,390,553 - Echvi_4513 0.38 -0.1
5,390,625 + Echvi_4513 0.43 -1.0
5,390,626 - Echvi_4513 0.43 +0.2
5,390,658 - Echvi_4513 0.45 -0.3
5,390,686 + Echvi_4513 0.47 -0.2
5,390,687 - Echvi_4513 0.47 -0.1
5,390,687 - Echvi_4513 0.47 +0.6
5,390,709 + Echvi_4513 0.49 +0.8
5,390,709 + Echvi_4513 0.49 -0.5
5,390,709 + Echvi_4513 0.49 +0.2
5,390,709 + Echvi_4513 0.49 +0.3
5,390,709 + Echvi_4513 0.49 -0.8
5,390,709 + Echvi_4513 0.49 -0.6
5,390,709 + Echvi_4513 0.49 +0.1
5,390,709 + Echvi_4513 0.49 -1.6
5,390,709 + Echvi_4513 0.49 -0.5
5,390,710 - Echvi_4513 0.49 -0.8
5,390,710 - Echvi_4513 0.49 -0.1
5,390,711 + Echvi_4513 0.49 +1.6
5,390,711 + Echvi_4513 0.49 +1.0
5,390,711 + Echvi_4513 0.49 +0.0
5,390,713 + Echvi_4513 0.49 +0.1
5,390,714 - Echvi_4513 0.49 +0.1
5,390,714 - Echvi_4513 0.49 -0.6
5,390,721 + Echvi_4513 0.50 -0.3
5,390,721 + Echvi_4513 0.50 +0.4
5,390,721 + Echvi_4513 0.50 +0.4
5,390,721 + Echvi_4513 0.50 -0.9
5,390,754 + Echvi_4513 0.52 +0.6
5,390,875 + Echvi_4513 0.60 -1.3
5,390,880 - Echvi_4513 0.61 -0.8
5,390,891 + Echvi_4513 0.62 +0.7
5,390,994 + Echvi_4513 0.69 -2.5
5,390,994 + Echvi_4513 0.69 -0.2
5,390,995 - Echvi_4513 0.69 +0.2
5,391,016 - Echvi_4513 0.70 -1.0
5,391,026 - Echvi_4513 0.71 +0.8
5,391,028 + Echvi_4513 0.71 -0.4
5,391,029 - Echvi_4513 0.71 -0.2
5,391,029 - Echvi_4513 0.71 -0.0
5,391,063 + Echvi_4513 0.73 +0.9
5,391,063 + Echvi_4513 0.73 -0.3
5,391,063 + Echvi_4513 0.73 -0.8
5,391,063 + Echvi_4513 0.73 -0.1
5,391,064 - Echvi_4513 0.73 -0.7
5,391,087 + Echvi_4513 0.75 +0.7
5,391,127 + Echvi_4513 0.78 +1.7
5,391,128 - Echvi_4513 0.78 +0.4
5,391,128 - Echvi_4513 0.78 -0.5
5,391,148 - Echvi_4513 0.79 -0.1
5,391,235 + Echvi_4513 0.85 -0.0
5,391,236 - Echvi_4513 0.85 -1.4
5,391,339 + -0.9
5,391,339 + +0.3
5,391,391 + +0.8
5,391,391 + -0.3
5,391,392 - -1.0
5,391,395 - -1.3
5,391,493 + -0.5
5,391,494 - -0.6
5,391,500 + -1.6
5,391,501 - -0.8
5,391,502 + +0.8
5,391,514 + -0.5
5,391,515 - +0.5
5,391,516 + -1.4
5,391,517 - -0.1
5,391,598 + +0.9
5,391,598 + -0.2
5,391,686 + Echvi_4514 0.14 +0.4
5,391,687 - Echvi_4514 0.15 +0.5
5,391,753 + Echvi_4514 0.18 +0.1
5,391,754 - Echvi_4514 0.19 +0.2
5,391,783 + Echvi_4514 0.20 +0.6
5,391,784 - Echvi_4514 0.20 +0.9
5,391,784 - Echvi_4514 0.20 +0.8
5,391,784 - Echvi_4514 0.20 -0.2
5,391,784 - Echvi_4514 0.20 +0.2
5,391,833 + Echvi_4514 0.23 -1.1
5,391,833 + Echvi_4514 0.23 +1.6
5,391,915 + Echvi_4514 0.28 +0.5
5,392,009 - Echvi_4514 0.34 -0.9
5,392,009 - Echvi_4514 0.34 -0.8
5,392,009 - Echvi_4514 0.34 -0.7
5,392,022 + Echvi_4514 0.35 -0.1
5,392,219 - Echvi_4514 0.46 -0.4
5,392,226 + Echvi_4514 0.47 +0.3
5,392,254 - Echvi_4514 0.48 -1.4
5,392,254 - Echvi_4514 0.48 +1.4
5,392,262 + Echvi_4514 0.49 +0.3
5,392,263 - Echvi_4514 0.49 +0.2
5,392,410 + Echvi_4514 0.58 -0.8
5,392,411 - Echvi_4514 0.58 -0.6
5,392,443 + Echvi_4514 0.60 +0.8
5,392,444 - Echvi_4514 0.60 -0.4

Or see this region's nucleotide sequence