Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4320

Experiment: m.b. Thallium(I) acetate 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4319 and Echvi_4320 are separated by 867 nucleotidesEchvi_4320 and Echvi_4321 are separated by 18 nucleotides Echvi_4319: Echvi_4319 - hypothetical protein, at 5,160,498 to 5,160,911 _4319 Echvi_4320: Echvi_4320 - hypothetical protein, at 5,161,779 to 5,162,708 _4320 Echvi_4321: Echvi_4321 - SusD family., at 5,162,727 to 5,164,466 _4321 Position (kb) 5161 5162 5163Strain fitness (log2 ratio) -2 -1 0 1 2at 5160.846 kb on - strand, within Echvi_4319at 5160.846 kb on - strand, within Echvi_4319at 5160.897 kb on - strandat 5160.914 kb on - strandat 5160.914 kb on - strandat 5160.914 kb on - strandat 5160.965 kb on - strandat 5160.984 kb on + strandat 5160.984 kb on + strandat 5160.984 kb on + strandat 5160.984 kb on + strandat 5160.984 kb on + strandat 5160.984 kb on + strandat 5160.984 kb on + strandat 5160.985 kb on - strandat 5160.985 kb on - strandat 5161.081 kb on + strandat 5161.155 kb on + strandat 5161.225 kb on + strandat 5161.241 kb on + strandat 5161.242 kb on - strandat 5161.301 kb on + strandat 5161.320 kb on + strandat 5161.320 kb on + strandat 5161.320 kb on + strandat 5161.321 kb on - strandat 5161.406 kb on + strandat 5161.406 kb on + strandat 5161.406 kb on + strandat 5161.407 kb on - strandat 5161.407 kb on - strandat 5161.407 kb on - strandat 5161.514 kb on - strandat 5161.516 kb on + strandat 5161.580 kb on + strandat 5161.654 kb on + strandat 5161.697 kb on + strandat 5161.782 kb on + strandat 5161.783 kb on - strandat 5161.783 kb on - strandat 5161.783 kb on - strandat 5161.804 kb on + strandat 5161.817 kb on + strandat 5161.818 kb on - strandat 5161.819 kb on + strandat 5161.820 kb on - strandat 5161.821 kb on + strandat 5161.867 kb on + strandat 5161.906 kb on + strand, within Echvi_4320at 5161.934 kb on - strand, within Echvi_4320at 5161.956 kb on + strand, within Echvi_4320at 5161.957 kb on - strand, within Echvi_4320at 5162.086 kb on - strand, within Echvi_4320at 5162.123 kb on + strand, within Echvi_4320at 5162.127 kb on - strand, within Echvi_4320at 5162.165 kb on - strand, within Echvi_4320at 5162.178 kb on + strand, within Echvi_4320at 5162.202 kb on + strand, within Echvi_4320at 5162.223 kb on + strand, within Echvi_4320at 5162.223 kb on + strand, within Echvi_4320at 5162.223 kb on + strand, within Echvi_4320at 5162.223 kb on + strand, within Echvi_4320at 5162.223 kb on + strand, within Echvi_4320at 5162.223 kb on + strand, within Echvi_4320at 5162.224 kb on - strand, within Echvi_4320at 5162.224 kb on - strand, within Echvi_4320at 5162.224 kb on - strand, within Echvi_4320at 5162.224 kb on - strand, within Echvi_4320at 5162.224 kb on - strand, within Echvi_4320at 5162.268 kb on + strand, within Echvi_4320at 5162.269 kb on - strand, within Echvi_4320at 5162.332 kb on + strand, within Echvi_4320at 5162.366 kb on - strand, within Echvi_4320at 5162.376 kb on - strand, within Echvi_4320at 5162.394 kb on + strand, within Echvi_4320at 5162.477 kb on - strand, within Echvi_4320at 5162.486 kb on - strand, within Echvi_4320at 5162.562 kb on + strand, within Echvi_4320at 5162.563 kb on - strand, within Echvi_4320at 5162.563 kb on - strand, within Echvi_4320at 5162.565 kb on - strand, within Echvi_4320at 5162.627 kb on + strandat 5162.628 kb on - strandat 5162.646 kb on - strandat 5162.649 kb on + strandat 5162.649 kb on + strandat 5162.650 kb on - strandat 5162.650 kb on - strandat 5162.650 kb on - strandat 5162.694 kb on + strandat 5162.708 kb on + strandat 5162.709 kb on - strandat 5162.709 kb on - strandat 5162.710 kb on + strandat 5162.711 kb on - strandat 5162.718 kb on - strandat 5162.722 kb on - strandat 5162.790 kb on + strandat 5162.790 kb on + strandat 5162.821 kb on - strandat 5162.839 kb on - strandat 5162.840 kb on + strandat 5162.840 kb on + strandat 5162.840 kb on + strandat 5162.840 kb on + strandat 5162.841 kb on - strandat 5162.841 kb on - strandat 5162.841 kb on - strandat 5162.841 kb on - strandat 5162.841 kb on - strandat 5162.862 kb on + strandat 5162.944 kb on + strand, within Echvi_4321at 5162.945 kb on - strand, within Echvi_4321at 5163.005 kb on + strand, within Echvi_4321at 5163.006 kb on - strand, within Echvi_4321at 5163.006 kb on - strand, within Echvi_4321at 5163.052 kb on - strand, within Echvi_4321at 5163.106 kb on - strand, within Echvi_4321at 5163.106 kb on - strand, within Echvi_4321at 5163.140 kb on - strand, within Echvi_4321at 5163.140 kb on - strand, within Echvi_4321at 5163.216 kb on + strand, within Echvi_4321at 5163.216 kb on + strand, within Echvi_4321at 5163.216 kb on + strand, within Echvi_4321at 5163.217 kb on - strand, within Echvi_4321at 5163.229 kb on - strand, within Echvi_4321at 5163.274 kb on + strand, within Echvi_4321at 5163.275 kb on - strand, within Echvi_4321at 5163.285 kb on + strand, within Echvi_4321at 5163.286 kb on - strand, within Echvi_4321at 5163.296 kb on - strand, within Echvi_4321at 5163.368 kb on + strand, within Echvi_4321at 5163.368 kb on + strand, within Echvi_4321at 5163.368 kb on + strand, within Echvi_4321at 5163.370 kb on + strand, within Echvi_4321at 5163.371 kb on - strand, within Echvi_4321at 5163.371 kb on - strand, within Echvi_4321at 5163.371 kb on - strand, within Echvi_4321at 5163.378 kb on + strand, within Echvi_4321at 5163.430 kb on + strand, within Echvi_4321at 5163.490 kb on + strand, within Echvi_4321at 5163.491 kb on - strand, within Echvi_4321at 5163.500 kb on + strand, within Echvi_4321at 5163.560 kb on - strand, within Echvi_4321at 5163.560 kb on - strand, within Echvi_4321at 5163.568 kb on - strand, within Echvi_4321at 5163.568 kb on - strand, within Echvi_4321at 5163.568 kb on - strand, within Echvi_4321at 5163.623 kb on + strand, within Echvi_4321at 5163.623 kb on + strand, within Echvi_4321at 5163.628 kb on + strand, within Echvi_4321at 5163.628 kb on + strand, within Echvi_4321

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.025 mg/ml
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5,160,846 - Echvi_4319 0.84 +0.6
5,160,846 - Echvi_4319 0.84 -1.2
5,160,897 - -0.0
5,160,914 - -0.8
5,160,914 - -1.3
5,160,914 - +0.8
5,160,965 - -1.2
5,160,984 + -0.5
5,160,984 + +0.5
5,160,984 + +0.3
5,160,984 + -0.8
5,160,984 + +1.0
5,160,984 + -0.1
5,160,984 + -0.6
5,160,985 - +0.1
5,160,985 - -0.5
5,161,081 + +1.6
5,161,155 + -0.7
5,161,225 + -1.8
5,161,241 + +0.5
5,161,242 - -1.4
5,161,301 + +2.2
5,161,320 + +0.8
5,161,320 + -0.2
5,161,320 + -0.3
5,161,321 - +0.5
5,161,406 + +0.7
5,161,406 + -1.6
5,161,406 + +0.3
5,161,407 - +0.4
5,161,407 - -1.3
5,161,407 - +0.2
5,161,514 - +0.1
5,161,516 + -0.6
5,161,580 + -0.4
5,161,654 + -1.1
5,161,697 + -0.0
5,161,782 + +1.3
5,161,783 - -0.5
5,161,783 - -2.2
5,161,783 - -0.2
5,161,804 + -0.7
5,161,817 + -1.5
5,161,818 - -0.4
5,161,819 + +0.3
5,161,820 - -0.4
5,161,821 + -1.5
5,161,867 + +0.3
5,161,906 + Echvi_4320 0.14 +0.2
5,161,934 - Echvi_4320 0.17 -1.8
5,161,956 + Echvi_4320 0.19 -0.2
5,161,957 - Echvi_4320 0.19 -0.5
5,162,086 - Echvi_4320 0.33 +0.1
5,162,123 + Echvi_4320 0.37 -0.9
5,162,127 - Echvi_4320 0.37 -0.8
5,162,165 - Echvi_4320 0.42 -1.1
5,162,178 + Echvi_4320 0.43 -0.9
5,162,202 + Echvi_4320 0.45 -0.0
5,162,223 + Echvi_4320 0.48 -0.4
5,162,223 + Echvi_4320 0.48 -0.0
5,162,223 + Echvi_4320 0.48 -0.2
5,162,223 + Echvi_4320 0.48 -0.3
5,162,223 + Echvi_4320 0.48 +2.4
5,162,223 + Echvi_4320 0.48 +0.5
5,162,224 - Echvi_4320 0.48 -0.4
5,162,224 - Echvi_4320 0.48 +0.7
5,162,224 - Echvi_4320 0.48 -1.2
5,162,224 - Echvi_4320 0.48 +0.8
5,162,224 - Echvi_4320 0.48 -0.6
5,162,268 + Echvi_4320 0.53 +0.7
5,162,269 - Echvi_4320 0.53 -1.5
5,162,332 + Echvi_4320 0.59 +0.6
5,162,366 - Echvi_4320 0.63 -0.8
5,162,376 - Echvi_4320 0.64 +0.6
5,162,394 + Echvi_4320 0.66 -0.0
5,162,477 - Echvi_4320 0.75 +0.8
5,162,486 - Echvi_4320 0.76 -0.2
5,162,562 + Echvi_4320 0.84 -2.6
5,162,563 - Echvi_4320 0.84 -0.5
5,162,563 - Echvi_4320 0.84 +0.1
5,162,565 - Echvi_4320 0.85 +0.5
5,162,627 + -0.4
5,162,628 - -2.2
5,162,646 - -0.6
5,162,649 + -1.9
5,162,649 + +0.4
5,162,650 - -1.1
5,162,650 - -0.8
5,162,650 - +0.4
5,162,694 + +0.3
5,162,708 + -1.0
5,162,709 - -1.0
5,162,709 - -0.3
5,162,710 + +0.1
5,162,711 - -0.5
5,162,718 - +1.5
5,162,722 - -1.1
5,162,790 + +1.0
5,162,790 + -0.1
5,162,821 - -0.8
5,162,839 - -0.8
5,162,840 + +0.8
5,162,840 + -1.5
5,162,840 + -0.3
5,162,840 + -0.2
5,162,841 - -0.7
5,162,841 - -0.1
5,162,841 - +0.4
5,162,841 - +0.1
5,162,841 - +0.4
5,162,862 + +0.6
5,162,944 + Echvi_4321 0.12 +0.4
5,162,945 - Echvi_4321 0.13 +0.1
5,163,005 + Echvi_4321 0.16 -0.2
5,163,006 - Echvi_4321 0.16 +0.2
5,163,006 - Echvi_4321 0.16 +0.8
5,163,052 - Echvi_4321 0.19 +0.3
5,163,106 - Echvi_4321 0.22 -0.3
5,163,106 - Echvi_4321 0.22 -0.4
5,163,140 - Echvi_4321 0.24 -0.9
5,163,140 - Echvi_4321 0.24 +0.8
5,163,216 + Echvi_4321 0.28 +0.0
5,163,216 + Echvi_4321 0.28 -0.8
5,163,216 + Echvi_4321 0.28 -0.5
5,163,217 - Echvi_4321 0.28 +0.8
5,163,229 - Echvi_4321 0.29 +0.3
5,163,274 + Echvi_4321 0.31 +0.2
5,163,275 - Echvi_4321 0.31 -0.1
5,163,285 + Echvi_4321 0.32 -0.6
5,163,286 - Echvi_4321 0.32 +0.2
5,163,296 - Echvi_4321 0.33 -0.3
5,163,368 + Echvi_4321 0.37 -1.5
5,163,368 + Echvi_4321 0.37 -1.0
5,163,368 + Echvi_4321 0.37 -1.4
5,163,370 + Echvi_4321 0.37 -0.4
5,163,371 - Echvi_4321 0.37 -0.9
5,163,371 - Echvi_4321 0.37 -0.4
5,163,371 - Echvi_4321 0.37 -0.6
5,163,378 + Echvi_4321 0.37 +1.3
5,163,430 + Echvi_4321 0.40 -0.2
5,163,490 + Echvi_4321 0.44 -0.5
5,163,491 - Echvi_4321 0.44 -0.5
5,163,500 + Echvi_4321 0.44 -1.2
5,163,560 - Echvi_4321 0.48 +0.1
5,163,560 - Echvi_4321 0.48 -1.6
5,163,568 - Echvi_4321 0.48 +0.9
5,163,568 - Echvi_4321 0.48 +0.5
5,163,568 - Echvi_4321 0.48 -0.2
5,163,623 + Echvi_4321 0.51 +0.4
5,163,623 + Echvi_4321 0.51 +0.7
5,163,628 + Echvi_4321 0.52 -0.1
5,163,628 + Echvi_4321 0.52 +0.4

Or see this region's nucleotide sequence