Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3659

Experiment: m.b. Thallium(I) acetate 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3658 and Echvi_3659 are separated by 196 nucleotidesEchvi_3659 and Echvi_3660 are separated by 58 nucleotidesEchvi_3660 and Echvi_3661 are separated by 79 nucleotides Echvi_3658: Echvi_3658 - hypothetical protein, at 4,344,537 to 4,346,222 _3658 Echvi_3659: Echvi_3659 - hypothetical protein, at 4,346,419 to 4,347,459 _3659 Echvi_3660: Echvi_3660 - ADP-ribose pyrophosphatase, at 4,347,518 to 4,347,931 _3660 Echvi_3661: Echvi_3661 - hypothetical protein, at 4,348,011 to 4,350,167 _3661 Position (kb) 4346 4347 4348Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4345.590 kb on + strand, within Echvi_3658at 4345.590 kb on + strand, within Echvi_3658at 4345.591 kb on - strand, within Echvi_3658at 4345.596 kb on - strand, within Echvi_3658at 4345.640 kb on + strand, within Echvi_3658at 4345.678 kb on + strand, within Echvi_3658at 4345.679 kb on - strand, within Echvi_3658at 4345.749 kb on + strand, within Echvi_3658at 4345.749 kb on + strand, within Echvi_3658at 4345.770 kb on - strand, within Echvi_3658at 4345.773 kb on - strand, within Echvi_3658at 4345.854 kb on + strand, within Echvi_3658at 4345.902 kb on + strand, within Echvi_3658at 4345.902 kb on + strand, within Echvi_3658at 4345.902 kb on + strand, within Echvi_3658at 4345.903 kb on - strand, within Echvi_3658at 4345.903 kb on - strand, within Echvi_3658at 4345.937 kb on + strand, within Echvi_3658at 4345.938 kb on - strand, within Echvi_3658at 4346.028 kb on - strand, within Echvi_3658at 4346.029 kb on + strand, within Echvi_3658at 4346.038 kb on + strand, within Echvi_3658at 4346.066 kb on + strandat 4346.098 kb on + strandat 4346.099 kb on - strandat 4346.127 kb on - strandat 4346.182 kb on - strandat 4346.192 kb on + strandat 4346.193 kb on - strandat 4346.252 kb on - strandat 4346.252 kb on - strandat 4346.261 kb on - strandat 4346.281 kb on - strandat 4346.291 kb on + strandat 4346.292 kb on - strandat 4346.294 kb on - strandat 4346.302 kb on - strandat 4346.336 kb on + strandat 4346.369 kb on + strandat 4346.369 kb on + strandat 4346.390 kb on + strandat 4346.391 kb on - strandat 4346.391 kb on - strandat 4346.394 kb on + strandat 4346.396 kb on + strandat 4346.397 kb on - strandat 4346.450 kb on + strandat 4346.451 kb on - strandat 4346.451 kb on - strandat 4346.515 kb on + strandat 4346.538 kb on + strand, within Echvi_3659at 4346.538 kb on + strand, within Echvi_3659at 4346.539 kb on - strand, within Echvi_3659at 4346.539 kb on - strand, within Echvi_3659at 4346.539 kb on - strand, within Echvi_3659at 4346.543 kb on - strand, within Echvi_3659at 4346.628 kb on + strand, within Echvi_3659at 4346.643 kb on - strand, within Echvi_3659at 4346.651 kb on + strand, within Echvi_3659at 4346.688 kb on - strand, within Echvi_3659at 4346.752 kb on - strand, within Echvi_3659at 4346.798 kb on + strand, within Echvi_3659at 4346.798 kb on + strand, within Echvi_3659at 4346.830 kb on - strand, within Echvi_3659at 4346.830 kb on - strand, within Echvi_3659at 4346.898 kb on - strand, within Echvi_3659at 4347.021 kb on - strand, within Echvi_3659at 4347.044 kb on + strand, within Echvi_3659at 4347.044 kb on + strand, within Echvi_3659at 4347.045 kb on - strand, within Echvi_3659at 4347.055 kb on + strand, within Echvi_3659at 4347.055 kb on + strand, within Echvi_3659at 4347.075 kb on + strand, within Echvi_3659at 4347.109 kb on + strand, within Echvi_3659at 4347.109 kb on + strand, within Echvi_3659at 4347.110 kb on - strand, within Echvi_3659at 4347.110 kb on - strand, within Echvi_3659at 4347.112 kb on - strand, within Echvi_3659at 4347.112 kb on - strand, within Echvi_3659at 4347.112 kb on - strand, within Echvi_3659at 4347.112 kb on - strand, within Echvi_3659at 4347.130 kb on + strand, within Echvi_3659at 4347.144 kb on + strand, within Echvi_3659at 4347.224 kb on - strand, within Echvi_3659at 4347.224 kb on - strand, within Echvi_3659at 4347.226 kb on + strand, within Echvi_3659at 4347.291 kb on - strand, within Echvi_3659at 4347.291 kb on - strand, within Echvi_3659at 4347.352 kb on + strand, within Echvi_3659at 4347.353 kb on - strand, within Echvi_3659at 4347.353 kb on - strand, within Echvi_3659at 4347.353 kb on - strand, within Echvi_3659at 4347.353 kb on - strand, within Echvi_3659at 4347.498 kb on + strandat 4347.543 kb on - strandat 4347.587 kb on + strand, within Echvi_3660at 4347.607 kb on - strand, within Echvi_3660at 4347.637 kb on + strand, within Echvi_3660at 4347.637 kb on + strand, within Echvi_3660at 4347.703 kb on + strand, within Echvi_3660at 4347.704 kb on - strand, within Echvi_3660at 4347.709 kb on + strand, within Echvi_3660at 4347.736 kb on + strand, within Echvi_3660at 4347.779 kb on + strand, within Echvi_3660at 4347.780 kb on - strand, within Echvi_3660at 4347.883 kb on + strand, within Echvi_3660at 4347.884 kb on - strand, within Echvi_3660at 4347.907 kb on - strandat 4347.971 kb on - strandat 4347.985 kb on + strandat 4347.985 kb on + strandat 4347.991 kb on - strandat 4348.104 kb on + strandat 4348.106 kb on + strandat 4348.106 kb on + strandat 4348.106 kb on + strandat 4348.107 kb on - strandat 4348.107 kb on - strandat 4348.107 kb on - strandat 4348.140 kb on + strandat 4348.141 kb on - strandat 4348.206 kb on + strandat 4348.206 kb on + strandat 4348.206 kb on + strandat 4348.207 kb on - strandat 4348.236 kb on - strand, within Echvi_3661at 4348.250 kb on - strand, within Echvi_3661at 4348.267 kb on + strand, within Echvi_3661at 4348.315 kb on - strand, within Echvi_3661at 4348.315 kb on - strand, within Echvi_3661at 4348.315 kb on - strand, within Echvi_3661at 4348.348 kb on + strand, within Echvi_3661at 4348.349 kb on - strand, within Echvi_3661at 4348.393 kb on - strand, within Echvi_3661at 4348.420 kb on + strand, within Echvi_3661at 4348.421 kb on - strand, within Echvi_3661at 4348.441 kb on - strand, within Echvi_3661at 4348.455 kb on + strand, within Echvi_3661at 4348.455 kb on + strand, within Echvi_3661at 4348.457 kb on + strand, within Echvi_3661

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.025 mg/ml
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4,345,590 + Echvi_3658 0.62 +0.0
4,345,590 + Echvi_3658 0.62 -0.7
4,345,591 - Echvi_3658 0.63 +0.4
4,345,596 - Echvi_3658 0.63 +1.5
4,345,640 + Echvi_3658 0.65 +0.1
4,345,678 + Echvi_3658 0.68 +0.6
4,345,679 - Echvi_3658 0.68 +0.4
4,345,749 + Echvi_3658 0.72 +0.9
4,345,749 + Echvi_3658 0.72 +0.4
4,345,770 - Echvi_3658 0.73 +0.1
4,345,773 - Echvi_3658 0.73 -0.4
4,345,854 + Echvi_3658 0.78 -0.7
4,345,902 + Echvi_3658 0.81 -0.2
4,345,902 + Echvi_3658 0.81 -0.5
4,345,902 + Echvi_3658 0.81 +0.2
4,345,903 - Echvi_3658 0.81 +0.4
4,345,903 - Echvi_3658 0.81 -0.2
4,345,937 + Echvi_3658 0.83 -0.1
4,345,938 - Echvi_3658 0.83 +0.4
4,346,028 - Echvi_3658 0.88 +1.6
4,346,029 + Echvi_3658 0.88 -0.6
4,346,038 + Echvi_3658 0.89 +0.1
4,346,066 + +1.0
4,346,098 + -0.2
4,346,099 - -0.2
4,346,127 - -0.3
4,346,182 - -0.2
4,346,192 + +0.2
4,346,193 - -1.0
4,346,252 - -1.7
4,346,252 - +0.2
4,346,261 - -0.2
4,346,281 - +3.3
4,346,291 + -1.0
4,346,292 - -0.7
4,346,294 - +0.4
4,346,302 - +0.1
4,346,336 + -0.5
4,346,369 + -0.7
4,346,369 + +0.4
4,346,390 + -0.3
4,346,391 - -1.0
4,346,391 - +0.3
4,346,394 + -1.2
4,346,396 + -0.0
4,346,397 - +0.3
4,346,450 + +0.6
4,346,451 - +0.1
4,346,451 - +0.3
4,346,515 + +1.3
4,346,538 + Echvi_3659 0.11 +0.3
4,346,538 + Echvi_3659 0.11 -0.7
4,346,539 - Echvi_3659 0.12 -1.0
4,346,539 - Echvi_3659 0.12 -0.3
4,346,539 - Echvi_3659 0.12 -0.2
4,346,543 - Echvi_3659 0.12 -0.8
4,346,628 + Echvi_3659 0.20 -0.6
4,346,643 - Echvi_3659 0.22 +0.5
4,346,651 + Echvi_3659 0.22 -0.3
4,346,688 - Echvi_3659 0.26 -0.2
4,346,752 - Echvi_3659 0.32 -0.8
4,346,798 + Echvi_3659 0.36 -0.1
4,346,798 + Echvi_3659 0.36 -2.6
4,346,830 - Echvi_3659 0.39 -0.6
4,346,830 - Echvi_3659 0.39 +0.4
4,346,898 - Echvi_3659 0.46 -0.6
4,347,021 - Echvi_3659 0.58 -1.2
4,347,044 + Echvi_3659 0.60 -0.4
4,347,044 + Echvi_3659 0.60 +0.4
4,347,045 - Echvi_3659 0.60 -0.1
4,347,055 + Echvi_3659 0.61 -0.2
4,347,055 + Echvi_3659 0.61 -0.4
4,347,075 + Echvi_3659 0.63 +0.2
4,347,109 + Echvi_3659 0.66 -0.6
4,347,109 + Echvi_3659 0.66 +0.2
4,347,110 - Echvi_3659 0.66 -0.6
4,347,110 - Echvi_3659 0.66 -0.2
4,347,112 - Echvi_3659 0.67 +0.2
4,347,112 - Echvi_3659 0.67 -0.3
4,347,112 - Echvi_3659 0.67 -1.1
4,347,112 - Echvi_3659 0.67 -1.6
4,347,130 + Echvi_3659 0.68 -0.7
4,347,144 + Echvi_3659 0.70 -0.4
4,347,224 - Echvi_3659 0.77 -0.2
4,347,224 - Echvi_3659 0.77 +0.4
4,347,226 + Echvi_3659 0.78 +0.7
4,347,291 - Echvi_3659 0.84 -0.4
4,347,291 - Echvi_3659 0.84 -0.7
4,347,352 + Echvi_3659 0.90 -0.4
4,347,353 - Echvi_3659 0.90 -0.2
4,347,353 - Echvi_3659 0.90 +0.3
4,347,353 - Echvi_3659 0.90 +0.0
4,347,353 - Echvi_3659 0.90 +0.1
4,347,498 + -0.1
4,347,543 - -0.9
4,347,587 + Echvi_3660 0.17 -1.1
4,347,607 - Echvi_3660 0.21 +0.8
4,347,637 + Echvi_3660 0.29 +0.9
4,347,637 + Echvi_3660 0.29 -0.8
4,347,703 + Echvi_3660 0.45 +1.4
4,347,704 - Echvi_3660 0.45 +0.3
4,347,709 + Echvi_3660 0.46 +0.5
4,347,736 + Echvi_3660 0.53 -0.5
4,347,779 + Echvi_3660 0.63 +1.3
4,347,780 - Echvi_3660 0.63 +0.8
4,347,883 + Echvi_3660 0.88 -0.1
4,347,884 - Echvi_3660 0.88 +1.0
4,347,907 - -0.4
4,347,971 - +0.1
4,347,985 + +0.1
4,347,985 + -0.4
4,347,991 - +0.0
4,348,104 + -0.2
4,348,106 + -0.3
4,348,106 + +0.3
4,348,106 + -0.1
4,348,107 - +0.2
4,348,107 - -0.9
4,348,107 - -0.1
4,348,140 + -0.3
4,348,141 - +0.9
4,348,206 + -0.7
4,348,206 + +0.1
4,348,206 + -0.6
4,348,207 - +0.1
4,348,236 - Echvi_3661 0.10 -1.0
4,348,250 - Echvi_3661 0.11 +1.7
4,348,267 + Echvi_3661 0.12 -0.2
4,348,315 - Echvi_3661 0.14 +0.4
4,348,315 - Echvi_3661 0.14 +0.7
4,348,315 - Echvi_3661 0.14 -0.1
4,348,348 + Echvi_3661 0.16 -0.5
4,348,349 - Echvi_3661 0.16 -0.7
4,348,393 - Echvi_3661 0.18 +0.8
4,348,420 + Echvi_3661 0.19 +0.3
4,348,421 - Echvi_3661 0.19 -0.1
4,348,441 - Echvi_3661 0.20 +0.1
4,348,455 + Echvi_3661 0.21 +0.2
4,348,455 + Echvi_3661 0.21 -0.0
4,348,457 + Echvi_3661 0.21 -0.6

Or see this region's nucleotide sequence