Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2939

Experiment: m.b. Thallium(I) acetate 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2938 and Echvi_2939 are separated by 274 nucleotidesEchvi_2939 and Echvi_2940 are separated by 160 nucleotides Echvi_2938: Echvi_2938 - Predicted metal-dependent hydrolase of the TIM-barrel fold, at 3,516,116 to 3,516,943 _2938 Echvi_2939: Echvi_2939 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), at 3,517,218 to 3,518,075 _2939 Echvi_2940: Echvi_2940 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 3,518,236 to 3,518,991 _2940 Position (kb) 3517 3518 3519Strain fitness (log2 ratio) -2 -1 0 1 2at 3516.293 kb on + strand, within Echvi_2938at 3516.294 kb on - strand, within Echvi_2938at 3516.296 kb on + strand, within Echvi_2938at 3516.296 kb on + strand, within Echvi_2938at 3516.314 kb on + strand, within Echvi_2938at 3516.314 kb on + strand, within Echvi_2938at 3516.314 kb on + strand, within Echvi_2938at 3516.315 kb on - strand, within Echvi_2938at 3516.315 kb on - strand, within Echvi_2938at 3516.315 kb on - strand, within Echvi_2938at 3516.315 kb on - strand, within Echvi_2938at 3516.315 kb on - strand, within Echvi_2938at 3516.410 kb on - strand, within Echvi_2938at 3516.444 kb on + strand, within Echvi_2938at 3516.444 kb on + strand, within Echvi_2938at 3516.544 kb on - strand, within Echvi_2938at 3516.756 kb on - strand, within Echvi_2938at 3516.949 kb on - strandat 3517.193 kb on + strandat 3517.193 kb on + strandat 3517.194 kb on - strandat 3517.219 kb on + strandat 3517.229 kb on - strandat 3517.281 kb on + strandat 3517.281 kb on + strandat 3517.304 kb on + strand, within Echvi_2939at 3517.304 kb on + strand, within Echvi_2939at 3517.304 kb on + strand, within Echvi_2939at 3517.378 kb on + strand, within Echvi_2939at 3517.379 kb on - strand, within Echvi_2939at 3517.387 kb on - strand, within Echvi_2939at 3517.387 kb on - strand, within Echvi_2939at 3517.404 kb on - strand, within Echvi_2939at 3517.430 kb on + strand, within Echvi_2939at 3517.430 kb on + strand, within Echvi_2939at 3517.658 kb on - strand, within Echvi_2939at 3517.778 kb on + strand, within Echvi_2939at 3517.779 kb on - strand, within Echvi_2939at 3517.779 kb on - strand, within Echvi_2939at 3517.779 kb on - strand, within Echvi_2939at 3517.826 kb on + strand, within Echvi_2939at 3517.829 kb on - strand, within Echvi_2939at 3518.086 kb on + strandat 3518.086 kb on + strandat 3518.087 kb on - strandat 3518.087 kb on - strandat 3518.092 kb on - strandat 3518.094 kb on + strandat 3518.188 kb on - strandat 3518.216 kb on - strandat 3518.273 kb on + strandat 3518.310 kb on + strandat 3518.311 kb on - strandat 3518.411 kb on + strand, within Echvi_2940at 3518.445 kb on + strand, within Echvi_2940at 3518.598 kb on + strand, within Echvi_2940at 3518.652 kb on + strand, within Echvi_2940at 3518.653 kb on - strand, within Echvi_2940at 3518.653 kb on - strand, within Echvi_2940at 3518.653 kb on - strand, within Echvi_2940at 3518.655 kb on - strand, within Echvi_2940at 3518.655 kb on - strand, within Echvi_2940at 3518.655 kb on - strand, within Echvi_2940at 3518.679 kb on - strand, within Echvi_2940at 3518.747 kb on - strand, within Echvi_2940at 3518.753 kb on - strand, within Echvi_2940at 3518.835 kb on + strand, within Echvi_2940at 3518.836 kb on - strand, within Echvi_2940at 3518.888 kb on + strand, within Echvi_2940at 3518.889 kb on - strand, within Echvi_2940at 3519.009 kb on + strandat 3519.009 kb on + strandat 3519.013 kb on + strandat 3519.016 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.025 mg/ml
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3,516,293 + Echvi_2938 0.21 -0.6
3,516,294 - Echvi_2938 0.21 +0.2
3,516,296 + Echvi_2938 0.22 -1.8
3,516,296 + Echvi_2938 0.22 +0.4
3,516,314 + Echvi_2938 0.24 +1.0
3,516,314 + Echvi_2938 0.24 +0.1
3,516,314 + Echvi_2938 0.24 -0.0
3,516,315 - Echvi_2938 0.24 -0.6
3,516,315 - Echvi_2938 0.24 +0.1
3,516,315 - Echvi_2938 0.24 +0.9
3,516,315 - Echvi_2938 0.24 +1.2
3,516,315 - Echvi_2938 0.24 +0.7
3,516,410 - Echvi_2938 0.36 -0.1
3,516,444 + Echvi_2938 0.40 -0.7
3,516,444 + Echvi_2938 0.40 +0.8
3,516,544 - Echvi_2938 0.52 -0.2
3,516,756 - Echvi_2938 0.77 +0.3
3,516,949 - -0.5
3,517,193 + -0.2
3,517,193 + -0.1
3,517,194 - -0.6
3,517,219 + +0.5
3,517,229 - +0.2
3,517,281 + -1.6
3,517,281 + -1.7
3,517,304 + Echvi_2939 0.10 +1.2
3,517,304 + Echvi_2939 0.10 -0.5
3,517,304 + Echvi_2939 0.10 -0.1
3,517,378 + Echvi_2939 0.19 -0.2
3,517,379 - Echvi_2939 0.19 -0.6
3,517,387 - Echvi_2939 0.20 -0.1
3,517,387 - Echvi_2939 0.20 -0.8
3,517,404 - Echvi_2939 0.22 -0.0
3,517,430 + Echvi_2939 0.25 -0.1
3,517,430 + Echvi_2939 0.25 +0.6
3,517,658 - Echvi_2939 0.51 -0.3
3,517,778 + Echvi_2939 0.65 -1.5
3,517,779 - Echvi_2939 0.65 -1.1
3,517,779 - Echvi_2939 0.65 -2.6
3,517,779 - Echvi_2939 0.65 -0.3
3,517,826 + Echvi_2939 0.71 +0.0
3,517,829 - Echvi_2939 0.71 -1.3
3,518,086 + +2.2
3,518,086 + +0.1
3,518,087 - +1.4
3,518,087 - -0.2
3,518,092 - -1.0
3,518,094 + -0.2
3,518,188 - -0.2
3,518,216 - +1.1
3,518,273 + +0.0
3,518,310 + +1.0
3,518,311 - -1.2
3,518,411 + Echvi_2940 0.23 +0.4
3,518,445 + Echvi_2940 0.28 -0.7
3,518,598 + Echvi_2940 0.48 +0.9
3,518,652 + Echvi_2940 0.55 +0.9
3,518,653 - Echvi_2940 0.55 +0.1
3,518,653 - Echvi_2940 0.55 -0.0
3,518,653 - Echvi_2940 0.55 +0.4
3,518,655 - Echvi_2940 0.55 -0.8
3,518,655 - Echvi_2940 0.55 -0.8
3,518,655 - Echvi_2940 0.55 -0.3
3,518,679 - Echvi_2940 0.59 -0.2
3,518,747 - Echvi_2940 0.68 -0.2
3,518,753 - Echvi_2940 0.68 -0.3
3,518,835 + Echvi_2940 0.79 +0.4
3,518,836 - Echvi_2940 0.79 -0.9
3,518,888 + Echvi_2940 0.86 +0.2
3,518,889 - Echvi_2940 0.86 +0.8
3,519,009 + +0.5
3,519,009 + -0.9
3,519,013 + -0.3
3,519,016 - -0.4

Or see this region's nucleotide sequence