Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2613

Experiment: m.b. Thallium(I) acetate 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2612 and Echvi_2613 are separated by 374 nucleotidesEchvi_2613 and Echvi_2614 overlap by 4 nucleotides Echvi_2612: Echvi_2612 - Arylsulfatase A and related enzymes, at 3,094,491 to 3,096,053 _2612 Echvi_2613: Echvi_2613 - Periplasmic component of the Tol biopolymer transport system, at 3,096,428 to 3,097,711 _2613 Echvi_2614: Echvi_2614 - SusD family., at 3,097,708 to 3,099,327 _2614 Position (kb) 3096 3097 3098Strain fitness (log2 ratio) -2 -1 0 1 2at 3095.434 kb on + strand, within Echvi_2612at 3095.490 kb on - strand, within Echvi_2612at 3095.552 kb on - strand, within Echvi_2612at 3095.651 kb on + strand, within Echvi_2612at 3095.737 kb on + strand, within Echvi_2612at 3095.738 kb on - strand, within Echvi_2612at 3095.809 kb on + strand, within Echvi_2612at 3095.855 kb on + strand, within Echvi_2612at 3095.856 kb on - strand, within Echvi_2612at 3095.856 kb on - strand, within Echvi_2612at 3095.856 kb on - strand, within Echvi_2612at 3095.859 kb on - strand, within Echvi_2612at 3095.954 kb on - strandat 3095.954 kb on - strandat 3095.993 kb on + strandat 3095.993 kb on + strandat 3095.993 kb on + strandat 3095.994 kb on - strandat 3095.996 kb on + strandat 3095.997 kb on - strandat 3096.002 kb on - strandat 3096.008 kb on + strandat 3096.008 kb on + strandat 3096.009 kb on - strandat 3096.061 kb on - strandat 3096.150 kb on + strandat 3096.151 kb on - strandat 3096.171 kb on - strandat 3096.171 kb on - strandat 3096.171 kb on - strandat 3096.177 kb on - strandat 3096.216 kb on + strandat 3096.359 kb on + strandat 3096.392 kb on - strandat 3096.410 kb on + strandat 3096.410 kb on + strandat 3096.454 kb on + strandat 3096.454 kb on + strandat 3096.455 kb on - strandat 3096.457 kb on + strandat 3096.491 kb on + strandat 3096.632 kb on - strand, within Echvi_2613at 3096.744 kb on + strand, within Echvi_2613at 3096.745 kb on - strand, within Echvi_2613at 3096.945 kb on + strand, within Echvi_2613at 3096.945 kb on + strand, within Echvi_2613at 3096.946 kb on - strand, within Echvi_2613at 3096.946 kb on - strand, within Echvi_2613at 3096.946 kb on - strand, within Echvi_2613at 3096.946 kb on - strand, within Echvi_2613at 3097.047 kb on + strand, within Echvi_2613at 3097.130 kb on + strand, within Echvi_2613at 3097.151 kb on + strand, within Echvi_2613at 3097.152 kb on - strand, within Echvi_2613at 3097.164 kb on + strand, within Echvi_2613at 3097.184 kb on - strand, within Echvi_2613at 3097.255 kb on - strand, within Echvi_2613at 3097.288 kb on + strand, within Echvi_2613at 3097.347 kb on + strand, within Echvi_2613at 3097.438 kb on + strand, within Echvi_2613at 3097.438 kb on + strand, within Echvi_2613at 3097.438 kb on + strand, within Echvi_2613at 3097.903 kb on + strand, within Echvi_2614at 3097.912 kb on - strand, within Echvi_2614at 3098.071 kb on - strand, within Echvi_2614at 3098.136 kb on + strand, within Echvi_2614at 3098.159 kb on - strand, within Echvi_2614at 3098.191 kb on + strand, within Echvi_2614at 3098.191 kb on + strand, within Echvi_2614at 3098.191 kb on + strand, within Echvi_2614at 3098.192 kb on - strand, within Echvi_2614at 3098.442 kb on - strand, within Echvi_2614at 3098.445 kb on + strand, within Echvi_2614at 3098.458 kb on - strand, within Echvi_2614at 3098.513 kb on - strand, within Echvi_2614at 3098.549 kb on + strand, within Echvi_2614at 3098.549 kb on + strand, within Echvi_2614at 3098.549 kb on + strand, within Echvi_2614at 3098.550 kb on - strand, within Echvi_2614at 3098.622 kb on + strand, within Echvi_2614at 3098.622 kb on + strand, within Echvi_2614at 3098.622 kb on + strand, within Echvi_2614at 3098.622 kb on + strand, within Echvi_2614at 3098.623 kb on - strand, within Echvi_2614at 3098.651 kb on + strand, within Echvi_2614at 3098.655 kb on - strand, within Echvi_2614

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.025 mg/ml
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3,095,434 + Echvi_2612 0.60 -0.7
3,095,490 - Echvi_2612 0.64 +0.2
3,095,552 - Echvi_2612 0.68 +0.0
3,095,651 + Echvi_2612 0.74 +0.2
3,095,737 + Echvi_2612 0.80 +0.9
3,095,738 - Echvi_2612 0.80 +1.0
3,095,809 + Echvi_2612 0.84 +0.0
3,095,855 + Echvi_2612 0.87 -0.8
3,095,856 - Echvi_2612 0.87 -0.7
3,095,856 - Echvi_2612 0.87 +0.5
3,095,856 - Echvi_2612 0.87 -0.1
3,095,859 - Echvi_2612 0.88 -0.6
3,095,954 - +0.9
3,095,954 - -0.8
3,095,993 + +0.7
3,095,993 + -0.0
3,095,993 + +0.4
3,095,994 - -1.4
3,095,996 + -0.7
3,095,997 - +0.0
3,096,002 - +0.6
3,096,008 + -0.2
3,096,008 + +0.2
3,096,009 - +0.8
3,096,061 - +0.6
3,096,150 + +0.0
3,096,151 - -0.0
3,096,171 - +0.1
3,096,171 - -2.0
3,096,171 - +0.8
3,096,177 - +0.0
3,096,216 + -0.8
3,096,359 + +2.1
3,096,392 - -2.5
3,096,410 + -1.9
3,096,410 + -1.4
3,096,454 + +1.4
3,096,454 + -0.2
3,096,455 - +0.2
3,096,457 + -1.0
3,096,491 + -0.9
3,096,632 - Echvi_2613 0.16 -1.0
3,096,744 + Echvi_2613 0.25 -0.6
3,096,745 - Echvi_2613 0.25 +0.6
3,096,945 + Echvi_2613 0.40 +0.6
3,096,945 + Echvi_2613 0.40 -0.6
3,096,946 - Echvi_2613 0.40 -0.1
3,096,946 - Echvi_2613 0.40 -0.9
3,096,946 - Echvi_2613 0.40 -0.6
3,096,946 - Echvi_2613 0.40 -0.5
3,097,047 + Echvi_2613 0.48 -1.9
3,097,130 + Echvi_2613 0.55 -0.7
3,097,151 + Echvi_2613 0.56 -0.1
3,097,152 - Echvi_2613 0.56 +1.0
3,097,164 + Echvi_2613 0.57 +0.1
3,097,184 - Echvi_2613 0.59 -0.5
3,097,255 - Echvi_2613 0.64 -0.3
3,097,288 + Echvi_2613 0.67 -1.0
3,097,347 + Echvi_2613 0.72 -0.8
3,097,438 + Echvi_2613 0.79 -1.4
3,097,438 + Echvi_2613 0.79 +0.8
3,097,438 + Echvi_2613 0.79 +0.4
3,097,903 + Echvi_2614 0.12 -1.4
3,097,912 - Echvi_2614 0.13 -0.5
3,098,071 - Echvi_2614 0.22 -1.7
3,098,136 + Echvi_2614 0.26 +0.4
3,098,159 - Echvi_2614 0.28 -0.6
3,098,191 + Echvi_2614 0.30 -0.7
3,098,191 + Echvi_2614 0.30 -2.3
3,098,191 + Echvi_2614 0.30 -0.3
3,098,192 - Echvi_2614 0.30 -0.8
3,098,442 - Echvi_2614 0.45 +0.4
3,098,445 + Echvi_2614 0.45 +0.5
3,098,458 - Echvi_2614 0.46 +0.2
3,098,513 - Echvi_2614 0.50 -2.0
3,098,549 + Echvi_2614 0.52 +0.2
3,098,549 + Echvi_2614 0.52 -1.1
3,098,549 + Echvi_2614 0.52 -0.4
3,098,550 - Echvi_2614 0.52 +0.2
3,098,622 + Echvi_2614 0.56 -0.4
3,098,622 + Echvi_2614 0.56 +1.0
3,098,622 + Echvi_2614 0.56 -1.3
3,098,622 + Echvi_2614 0.56 -0.3
3,098,623 - Echvi_2614 0.56 -2.2
3,098,651 + Echvi_2614 0.58 -0.2
3,098,655 - Echvi_2614 0.58 -0.4

Or see this region's nucleotide sequence