Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1479

Experiment: m.b. Thallium(I) acetate 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1477 and Echvi_1478 are separated by 3 nucleotidesEchvi_1478 and Echvi_1479 are separated by 8 nucleotidesEchvi_1479 and Echvi_1480 are separated by 3 nucleotidesEchvi_1480 and Echvi_1481 are separated by 33 nucleotides Echvi_1477: Echvi_1477 - phytoene desaturase, at 1,692,207 to 1,693,703 _1477 Echvi_1478: Echvi_1478 - Phytoene/squalene synthetase, at 1,693,707 to 1,694,549 _1478 Echvi_1479: Echvi_1479 - lycopene cyclase domain, at 1,694,558 to 1,695,268 _1479 Echvi_1480: Echvi_1480 - (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming), at 1,695,272 to 1,696,117 _1480 Echvi_1481: Echvi_1481 - Fatty acid desaturase, at 1,696,151 to 1,696,843 _1481 Position (kb) 1694 1695 1696Strain fitness (log2 ratio) -2 -1 0 1 2at 1693.568 kb on + strandat 1693.581 kb on - strandat 1693.593 kb on - strandat 1693.677 kb on + strandat 1693.682 kb on - strandat 1693.682 kb on - strandat 1693.702 kb on - strandat 1693.702 kb on - strandat 1693.706 kb on + strandat 1693.706 kb on + strandat 1693.707 kb on - strandat 1693.707 kb on - strandat 1693.707 kb on - strandat 1693.752 kb on - strandat 1693.796 kb on + strand, within Echvi_1478at 1693.796 kb on + strand, within Echvi_1478at 1693.797 kb on - strand, within Echvi_1478at 1693.830 kb on + strand, within Echvi_1478at 1693.837 kb on + strand, within Echvi_1478at 1693.837 kb on + strand, within Echvi_1478at 1693.838 kb on - strand, within Echvi_1478at 1693.839 kb on + strand, within Echvi_1478at 1693.839 kb on + strand, within Echvi_1478at 1693.840 kb on - strand, within Echvi_1478at 1693.925 kb on + strand, within Echvi_1478at 1693.925 kb on + strand, within Echvi_1478at 1693.926 kb on - strand, within Echvi_1478at 1693.926 kb on - strand, within Echvi_1478at 1693.926 kb on - strand, within Echvi_1478at 1693.926 kb on - strand, within Echvi_1478at 1693.930 kb on - strand, within Echvi_1478at 1693.998 kb on + strand, within Echvi_1478at 1693.998 kb on + strand, within Echvi_1478at 1694.015 kb on + strand, within Echvi_1478at 1694.016 kb on - strand, within Echvi_1478at 1694.067 kb on + strand, within Echvi_1478at 1694.067 kb on + strand, within Echvi_1478at 1694.068 kb on - strand, within Echvi_1478at 1694.069 kb on + strand, within Echvi_1478at 1694.069 kb on + strand, within Echvi_1478at 1694.069 kb on + strand, within Echvi_1478at 1694.069 kb on + strand, within Echvi_1478at 1694.069 kb on + strand, within Echvi_1478at 1694.069 kb on + strand, within Echvi_1478at 1694.069 kb on + strand, within Echvi_1478at 1694.070 kb on - strand, within Echvi_1478at 1694.070 kb on - strand, within Echvi_1478at 1694.070 kb on - strand, within Echvi_1478at 1694.082 kb on + strand, within Echvi_1478at 1694.083 kb on - strand, within Echvi_1478at 1694.093 kb on + strand, within Echvi_1478at 1694.093 kb on + strand, within Echvi_1478at 1694.093 kb on + strand, within Echvi_1478at 1694.093 kb on + strand, within Echvi_1478at 1694.093 kb on + strand, within Echvi_1478at 1694.097 kb on + strand, within Echvi_1478at 1694.098 kb on - strand, within Echvi_1478at 1694.113 kb on + strand, within Echvi_1478at 1694.114 kb on - strand, within Echvi_1478at 1694.163 kb on + strand, within Echvi_1478at 1694.263 kb on + strand, within Echvi_1478at 1694.264 kb on - strand, within Echvi_1478at 1694.264 kb on - strand, within Echvi_1478at 1694.264 kb on - strand, within Echvi_1478at 1694.265 kb on + strand, within Echvi_1478at 1694.265 kb on + strand, within Echvi_1478at 1694.283 kb on + strand, within Echvi_1478at 1694.283 kb on + strand, within Echvi_1478at 1694.317 kb on + strand, within Echvi_1478at 1694.327 kb on + strandat 1694.353 kb on - strand, within Echvi_1478at 1694.407 kb on - strand, within Echvi_1478at 1694.412 kb on + strand, within Echvi_1478at 1694.412 kb on + strand, within Echvi_1478at 1694.413 kb on - strand, within Echvi_1478at 1694.413 kb on - strand, within Echvi_1478at 1694.520 kb on + strandat 1694.520 kb on + strandat 1694.567 kb on + strandat 1694.568 kb on - strandat 1694.574 kb on - strandat 1694.584 kb on - strandat 1694.588 kb on - strandat 1694.640 kb on - strand, within Echvi_1479at 1694.640 kb on - strand, within Echvi_1479at 1694.640 kb on - strand, within Echvi_1479at 1694.793 kb on - strand, within Echvi_1479at 1694.835 kb on - strand, within Echvi_1479at 1694.835 kb on - strand, within Echvi_1479at 1694.849 kb on + strand, within Echvi_1479at 1694.852 kb on + strand, within Echvi_1479at 1694.853 kb on - strand, within Echvi_1479at 1694.854 kb on + strand, within Echvi_1479at 1694.922 kb on + strand, within Echvi_1479at 1694.922 kb on + strand, within Echvi_1479at 1694.952 kb on - strand, within Echvi_1479at 1694.954 kb on - strand, within Echvi_1479at 1694.954 kb on - strand, within Echvi_1479at 1694.999 kb on + strand, within Echvi_1479at 1694.999 kb on + strand, within Echvi_1479at 1695.000 kb on - strand, within Echvi_1479at 1695.000 kb on - strand, within Echvi_1479at 1695.036 kb on - strand, within Echvi_1479at 1695.036 kb on - strand, within Echvi_1479at 1695.044 kb on + strand, within Echvi_1479at 1695.044 kb on + strand, within Echvi_1479at 1695.044 kb on + strand, within Echvi_1479at 1695.045 kb on - strand, within Echvi_1479at 1695.101 kb on - strand, within Echvi_1479at 1695.122 kb on + strand, within Echvi_1479at 1695.123 kb on - strand, within Echvi_1479at 1695.123 kb on - strand, within Echvi_1479at 1695.216 kb on + strandat 1695.217 kb on - strandat 1695.217 kb on - strandat 1695.217 kb on - strandat 1695.217 kb on - strandat 1695.217 kb on - strandat 1695.217 kb on - strandat 1695.217 kb on - strandat 1695.246 kb on + strandat 1695.267 kb on - strandat 1695.272 kb on - strandat 1695.272 kb on - strandat 1695.325 kb on - strandat 1695.327 kb on + strandat 1695.327 kb on + strandat 1695.327 kb on + strandat 1695.327 kb on + strandat 1695.327 kb on + strandat 1695.327 kb on + strandat 1695.328 kb on - strandat 1695.328 kb on - strandat 1695.328 kb on - strandat 1695.328 kb on - strandat 1695.328 kb on - strandat 1695.329 kb on + strandat 1695.329 kb on + strandat 1695.329 kb on + strandat 1695.329 kb on + strandat 1695.329 kb on + strandat 1695.329 kb on + strandat 1695.329 kb on + strandat 1695.330 kb on - strandat 1695.330 kb on - strandat 1695.330 kb on - strandat 1695.353 kb on - strandat 1695.463 kb on + strand, within Echvi_1480at 1695.464 kb on - strand, within Echvi_1480at 1695.486 kb on + strand, within Echvi_1480at 1695.486 kb on + strand, within Echvi_1480at 1695.487 kb on - strand, within Echvi_1480at 1695.547 kb on + strand, within Echvi_1480at 1695.630 kb on - strand, within Echvi_1480at 1695.636 kb on - strand, within Echvi_1480at 1695.660 kb on + strand, within Echvi_1480at 1695.661 kb on - strand, within Echvi_1480at 1695.711 kb on + strand, within Echvi_1480at 1695.748 kb on + strand, within Echvi_1480at 1695.749 kb on - strand, within Echvi_1480at 1695.782 kb on - strand, within Echvi_1480at 1695.789 kb on - strand, within Echvi_1480at 1695.789 kb on - strand, within Echvi_1480at 1695.822 kb on + strand, within Echvi_1480at 1695.823 kb on - strand, within Echvi_1480at 1695.897 kb on + strand, within Echvi_1480at 1695.898 kb on - strand, within Echvi_1480at 1695.899 kb on + strand, within Echvi_1480at 1695.900 kb on - strand, within Echvi_1480at 1695.900 kb on - strand, within Echvi_1480at 1695.909 kb on + strand, within Echvi_1480at 1695.925 kb on + strand, within Echvi_1480at 1696.040 kb on - strandat 1696.040 kb on - strandat 1696.092 kb on + strandat 1696.128 kb on - strandat 1696.172 kb on + strandat 1696.172 kb on + strandat 1696.173 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.025 mg/ml
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1,693,568 + -0.8
1,693,581 - +0.9
1,693,593 - +0.8
1,693,677 + -0.5
1,693,682 - -0.1
1,693,682 - +0.7
1,693,702 - -0.3
1,693,702 - +0.1
1,693,706 + -0.8
1,693,706 + -0.3
1,693,707 - -1.3
1,693,707 - +1.1
1,693,707 - -0.1
1,693,752 - -0.3
1,693,796 + Echvi_1478 0.11 +0.4
1,693,796 + Echvi_1478 0.11 -1.2
1,693,797 - Echvi_1478 0.11 +0.5
1,693,830 + Echvi_1478 0.15 +0.5
1,693,837 + Echvi_1478 0.15 +0.2
1,693,837 + Echvi_1478 0.15 -1.6
1,693,838 - Echvi_1478 0.16 -0.5
1,693,839 + Echvi_1478 0.16 +0.5
1,693,839 + Echvi_1478 0.16 +0.4
1,693,840 - Echvi_1478 0.16 -0.6
1,693,925 + Echvi_1478 0.26 +0.1
1,693,925 + Echvi_1478 0.26 +2.6
1,693,926 - Echvi_1478 0.26 -0.1
1,693,926 - Echvi_1478 0.26 -1.0
1,693,926 - Echvi_1478 0.26 -0.1
1,693,926 - Echvi_1478 0.26 -0.4
1,693,930 - Echvi_1478 0.26 +0.0
1,693,998 + Echvi_1478 0.35 -0.9
1,693,998 + Echvi_1478 0.35 -0.3
1,694,015 + Echvi_1478 0.37 -1.1
1,694,016 - Echvi_1478 0.37 -1.5
1,694,067 + Echvi_1478 0.43 -0.5
1,694,067 + Echvi_1478 0.43 -0.3
1,694,068 - Echvi_1478 0.43 -1.4
1,694,069 + Echvi_1478 0.43 -0.1
1,694,069 + Echvi_1478 0.43 +0.3
1,694,069 + Echvi_1478 0.43 -0.8
1,694,069 + Echvi_1478 0.43 -0.7
1,694,069 + Echvi_1478 0.43 -0.6
1,694,069 + Echvi_1478 0.43 -0.4
1,694,069 + Echvi_1478 0.43 +0.6
1,694,070 - Echvi_1478 0.43 +0.6
1,694,070 - Echvi_1478 0.43 +0.2
1,694,070 - Echvi_1478 0.43 -1.0
1,694,082 + Echvi_1478 0.44 +0.1
1,694,083 - Echvi_1478 0.45 -1.0
1,694,093 + Echvi_1478 0.46 +0.1
1,694,093 + Echvi_1478 0.46 +1.0
1,694,093 + Echvi_1478 0.46 +0.8
1,694,093 + Echvi_1478 0.46 +0.6
1,694,093 + Echvi_1478 0.46 -0.9
1,694,097 + Echvi_1478 0.46 +0.4
1,694,098 - Echvi_1478 0.46 +0.0
1,694,113 + Echvi_1478 0.48 -1.4
1,694,114 - Echvi_1478 0.48 +0.1
1,694,163 + Echvi_1478 0.54 +0.5
1,694,263 + Echvi_1478 0.66 +0.2
1,694,264 - Echvi_1478 0.66 +0.1
1,694,264 - Echvi_1478 0.66 +0.2
1,694,264 - Echvi_1478 0.66 -0.1
1,694,265 + Echvi_1478 0.66 -0.6
1,694,265 + Echvi_1478 0.66 -0.3
1,694,283 + Echvi_1478 0.68 +0.9
1,694,283 + Echvi_1478 0.68 -0.6
1,694,317 + Echvi_1478 0.72 -0.1
1,694,327 + +0.4
1,694,353 - Echvi_1478 0.77 -1.1
1,694,407 - Echvi_1478 0.83 -0.5
1,694,412 + Echvi_1478 0.84 +0.2
1,694,412 + Echvi_1478 0.84 +0.9
1,694,413 - Echvi_1478 0.84 +0.2
1,694,413 - Echvi_1478 0.84 +0.8
1,694,520 + +1.2
1,694,520 + -0.8
1,694,567 + -0.2
1,694,568 - +0.1
1,694,574 - +1.1
1,694,584 - +1.7
1,694,588 - -1.4
1,694,640 - Echvi_1479 0.12 +0.4
1,694,640 - Echvi_1479 0.12 -1.0
1,694,640 - Echvi_1479 0.12 +0.2
1,694,793 - Echvi_1479 0.33 +0.2
1,694,835 - Echvi_1479 0.39 +0.6
1,694,835 - Echvi_1479 0.39 -0.6
1,694,849 + Echvi_1479 0.41 +0.5
1,694,852 + Echvi_1479 0.41 -0.9
1,694,853 - Echvi_1479 0.41 +0.7
1,694,854 + Echvi_1479 0.42 -0.1
1,694,922 + Echvi_1479 0.51 +2.0
1,694,922 + Echvi_1479 0.51 +0.9
1,694,952 - Echvi_1479 0.55 -0.4
1,694,954 - Echvi_1479 0.56 +0.9
1,694,954 - Echvi_1479 0.56 +0.5
1,694,999 + Echvi_1479 0.62 +0.8
1,694,999 + Echvi_1479 0.62 +0.4
1,695,000 - Echvi_1479 0.62 -0.1
1,695,000 - Echvi_1479 0.62 -1.3
1,695,036 - Echvi_1479 0.67 -0.4
1,695,036 - Echvi_1479 0.67 +0.3
1,695,044 + Echvi_1479 0.68 +1.5
1,695,044 + Echvi_1479 0.68 +0.6
1,695,044 + Echvi_1479 0.68 +0.4
1,695,045 - Echvi_1479 0.68 +0.2
1,695,101 - Echvi_1479 0.76 -0.5
1,695,122 + Echvi_1479 0.79 -1.1
1,695,123 - Echvi_1479 0.79 +0.4
1,695,123 - Echvi_1479 0.79 -0.1
1,695,216 + +1.1
1,695,217 - -0.8
1,695,217 - -0.2
1,695,217 - -0.3
1,695,217 - -0.6
1,695,217 - +0.0
1,695,217 - -0.2
1,695,217 - -0.5
1,695,246 + +0.2
1,695,267 - +0.4
1,695,272 - +1.0
1,695,272 - -1.1
1,695,325 - -0.3
1,695,327 + +0.7
1,695,327 + +0.4
1,695,327 + +1.3
1,695,327 + -0.6
1,695,327 + -0.5
1,695,327 + +2.2
1,695,328 - -0.1
1,695,328 - -0.8
1,695,328 - +0.2
1,695,328 - +0.2
1,695,328 - -1.1
1,695,329 + -0.1
1,695,329 + +0.1
1,695,329 + -0.6
1,695,329 + +0.5
1,695,329 + -0.1
1,695,329 + -1.1
1,695,329 + -0.3
1,695,330 - +0.9
1,695,330 - -2.0
1,695,330 - +1.1
1,695,353 - +0.1
1,695,463 + Echvi_1480 0.23 +0.0
1,695,464 - Echvi_1480 0.23 +0.2
1,695,486 + Echvi_1480 0.25 +0.3
1,695,486 + Echvi_1480 0.25 -0.4
1,695,487 - Echvi_1480 0.25 +0.2
1,695,547 + Echvi_1480 0.33 +0.2
1,695,630 - Echvi_1480 0.42 -1.3
1,695,636 - Echvi_1480 0.43 +1.3
1,695,660 + Echvi_1480 0.46 -0.3
1,695,661 - Echvi_1480 0.46 +0.4
1,695,711 + Echvi_1480 0.52 +0.1
1,695,748 + Echvi_1480 0.56 -1.1
1,695,749 - Echvi_1480 0.56 -0.3
1,695,782 - Echvi_1480 0.60 -0.1
1,695,789 - Echvi_1480 0.61 +1.1
1,695,789 - Echvi_1480 0.61 -0.1
1,695,822 + Echvi_1480 0.65 +0.1
1,695,823 - Echvi_1480 0.65 +0.5
1,695,897 + Echvi_1480 0.74 +1.3
1,695,898 - Echvi_1480 0.74 +0.0
1,695,899 + Echvi_1480 0.74 -0.6
1,695,900 - Echvi_1480 0.74 -0.7
1,695,900 - Echvi_1480 0.74 +0.1
1,695,909 + Echvi_1480 0.75 -0.2
1,695,925 + Echvi_1480 0.77 -0.0
1,696,040 - -0.1
1,696,040 - -0.6
1,696,092 + +0.3
1,696,128 - +1.6
1,696,172 + -0.1
1,696,172 + +0.7
1,696,173 - -1.2

Or see this region's nucleotide sequence