Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1062

Experiment: m.b. Thallium(I) acetate 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1061 and Echvi_1062 are separated by 600 nucleotidesEchvi_1062 and Echvi_1063 are separated by 26 nucleotides Echvi_1061: Echvi_1061 - hypothetical protein, at 1,220,732 to 1,222,477 _1061 Echvi_1062: Echvi_1062 - hypothetical protein, at 1,223,078 to 1,223,842 _1062 Echvi_1063: Echvi_1063 - Predicted esterase, at 1,223,869 to 1,224,681 _1063 Position (kb) 1223 1224Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1222.304 kb on + strandat 1222.335 kb on - strandat 1222.336 kb on + strandat 1222.404 kb on + strandat 1222.413 kb on + strandat 1222.414 kb on - strandat 1222.417 kb on + strandat 1222.423 kb on + strandat 1222.424 kb on - strandat 1222.424 kb on - strandat 1222.426 kb on + strandat 1222.432 kb on + strandat 1222.432 kb on + strandat 1222.433 kb on - strandat 1222.433 kb on - strandat 1222.479 kb on + strandat 1222.480 kb on - strandat 1222.480 kb on - strandat 1222.501 kb on + strandat 1222.501 kb on + strandat 1222.502 kb on - strandat 1222.502 kb on - strandat 1222.502 kb on - strandat 1222.509 kb on + strandat 1222.510 kb on - strandat 1222.512 kb on - strandat 1222.512 kb on - strandat 1222.657 kb on + strandat 1222.678 kb on + strandat 1222.678 kb on + strandat 1222.688 kb on + strandat 1222.689 kb on - strandat 1222.692 kb on + strandat 1222.695 kb on + strandat 1222.702 kb on + strandat 1222.739 kb on + strandat 1222.851 kb on + strandat 1222.851 kb on + strandat 1222.855 kb on + strandat 1222.855 kb on + strandat 1222.855 kb on + strandat 1222.855 kb on + strandat 1222.855 kb on + strandat 1222.857 kb on + strandat 1222.857 kb on + strandat 1222.857 kb on + strandat 1222.857 kb on + strandat 1222.857 kb on + strandat 1222.857 kb on + strandat 1222.945 kb on + strandat 1222.976 kb on + strandat 1222.999 kb on + strandat 1222.999 kb on + strandat 1223.005 kb on + strandat 1223.037 kb on + strandat 1223.073 kb on + strandat 1223.097 kb on + strandat 1223.101 kb on + strandat 1223.101 kb on + strandat 1223.101 kb on + strandat 1223.180 kb on + strand, within Echvi_1062at 1223.224 kb on + strand, within Echvi_1062at 1223.224 kb on + strandat 1223.224 kb on + strand, within Echvi_1062at 1223.228 kb on + strand, within Echvi_1062at 1223.228 kb on + strand, within Echvi_1062at 1223.232 kb on + strand, within Echvi_1062at 1223.232 kb on + strand, within Echvi_1062at 1223.232 kb on + strand, within Echvi_1062at 1223.289 kb on + strand, within Echvi_1062at 1223.290 kb on - strand, within Echvi_1062at 1223.290 kb on - strand, within Echvi_1062at 1223.294 kb on + strand, within Echvi_1062at 1223.294 kb on + strand, within Echvi_1062at 1223.294 kb on + strand, within Echvi_1062at 1223.298 kb on + strand, within Echvi_1062at 1223.298 kb on + strand, within Echvi_1062at 1223.298 kb on + strand, within Echvi_1062at 1223.298 kb on + strand, within Echvi_1062at 1223.298 kb on + strand, within Echvi_1062at 1223.299 kb on - strand, within Echvi_1062at 1223.299 kb on - strand, within Echvi_1062at 1223.417 kb on + strand, within Echvi_1062at 1223.418 kb on - strand, within Echvi_1062at 1223.431 kb on + strand, within Echvi_1062at 1223.438 kb on - strand, within Echvi_1062at 1223.474 kb on + strand, within Echvi_1062at 1223.474 kb on + strand, within Echvi_1062at 1223.475 kb on - strand, within Echvi_1062at 1223.482 kb on + strand, within Echvi_1062at 1223.548 kb on + strand, within Echvi_1062at 1223.587 kb on + strand, within Echvi_1062at 1223.588 kb on - strand, within Echvi_1062at 1223.614 kb on - strand, within Echvi_1062at 1223.617 kb on - strand, within Echvi_1062at 1223.654 kb on + strand, within Echvi_1062at 1223.681 kb on + strand, within Echvi_1062at 1223.681 kb on + strand, within Echvi_1062at 1223.681 kb on + strand, within Echvi_1062at 1223.682 kb on - strand, within Echvi_1062at 1223.683 kb on + strand, within Echvi_1062at 1223.683 kb on + strand, within Echvi_1062at 1223.683 kb on + strand, within Echvi_1062at 1223.683 kb on + strand, within Echvi_1062at 1223.684 kb on - strand, within Echvi_1062at 1223.684 kb on - strand, within Echvi_1062at 1223.696 kb on + strand, within Echvi_1062at 1223.696 kb on + strand, within Echvi_1062at 1223.754 kb on + strand, within Echvi_1062at 1223.754 kb on + strand, within Echvi_1062at 1223.754 kb on + strand, within Echvi_1062at 1223.755 kb on - strand, within Echvi_1062at 1223.755 kb on - strand, within Echvi_1062at 1223.755 kb on - strand, within Echvi_1062at 1223.757 kb on + strand, within Echvi_1062at 1223.757 kb on + strand, within Echvi_1062at 1223.758 kb on - strand, within Echvi_1062at 1223.758 kb on - strand, within Echvi_1062at 1223.761 kb on + strand, within Echvi_1062at 1223.761 kb on + strand, within Echvi_1062at 1223.761 kb on + strand, within Echvi_1062at 1223.762 kb on - strand, within Echvi_1062at 1223.818 kb on + strandat 1223.818 kb on + strandat 1223.819 kb on - strandat 1223.884 kb on - strandat 1223.903 kb on + strandat 1223.909 kb on + strandat 1223.909 kb on + strandat 1223.909 kb on + strandat 1223.909 kb on + strandat 1223.910 kb on - strandat 1223.910 kb on - strandat 1223.910 kb on - strandat 1223.910 kb on - strandat 1223.910 kb on - strandat 1223.910 kb on - strandat 1223.991 kb on - strand, within Echvi_1063at 1223.991 kb on - strand, within Echvi_1063at 1224.005 kb on - strand, within Echvi_1063at 1224.023 kb on - strand, within Echvi_1063at 1224.023 kb on - strand, within Echvi_1063at 1224.032 kb on + strand, within Echvi_1063at 1224.033 kb on - strand, within Echvi_1063at 1224.034 kb on + strand, within Echvi_1063at 1224.034 kb on + strand, within Echvi_1063at 1224.034 kb on + strand, within Echvi_1063at 1224.035 kb on - strand, within Echvi_1063at 1224.089 kb on + strand, within Echvi_1063at 1224.089 kb on + strand, within Echvi_1063at 1224.098 kb on - strand, within Echvi_1063at 1224.118 kb on - strand, within Echvi_1063at 1224.154 kb on + strand, within Echvi_1063at 1224.197 kb on - strand, within Echvi_1063at 1224.197 kb on - strand, within Echvi_1063at 1224.197 kb on - strand, within Echvi_1063at 1224.235 kb on + strand, within Echvi_1063at 1224.236 kb on - strand, within Echvi_1063at 1224.236 kb on - strand, within Echvi_1063at 1224.304 kb on + strand, within Echvi_1063at 1224.305 kb on - strand, within Echvi_1063at 1224.342 kb on - strand, within Echvi_1063at 1224.348 kb on + strand, within Echvi_1063at 1224.349 kb on - strand, within Echvi_1063at 1224.349 kb on - strand, within Echvi_1063at 1224.447 kb on + strand, within Echvi_1063at 1224.492 kb on + strand, within Echvi_1063at 1224.527 kb on - strand, within Echvi_1063at 1224.567 kb on + strand, within Echvi_1063at 1224.568 kb on - strand, within Echvi_1063at 1224.570 kb on + strand, within Echvi_1063at 1224.570 kb on + strand, within Echvi_1063at 1224.570 kb on + strand, within Echvi_1063at 1224.616 kb on + strandat 1224.616 kb on + strandat 1224.617 kb on - strandat 1224.617 kb on - strandat 1224.649 kb on + strandat 1224.650 kb on - strandat 1224.733 kb on + strandat 1224.733 kb on + strandat 1224.734 kb on - strandat 1224.734 kb on - strandat 1224.736 kb on + strandat 1224.736 kb on + strandat 1224.737 kb on - strandat 1224.737 kb on - strandat 1224.737 kb on - strandat 1224.742 kb on - strandat 1224.746 kb on - strandat 1224.746 kb on - strandat 1224.746 kb on - strandat 1224.799 kb on + strandat 1224.799 kb on + strandat 1224.800 kb on - strandat 1224.800 kb on - strandat 1224.800 kb on - strandat 1224.800 kb on - strandat 1224.807 kb on + strandat 1224.807 kb on + strandat 1224.807 kb on + strandat 1224.807 kb on + strandat 1224.808 kb on - strandat 1224.811 kb on + strandat 1224.812 kb on - strandat 1224.812 kb on - strandat 1224.818 kb on + strandat 1224.818 kb on + strandat 1224.819 kb on - strandat 1224.819 kb on - strandat 1224.819 kb on - strandat 1224.819 kb on - strandat 1224.825 kb on + strandat 1224.825 kb on + strandat 1224.840 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.025 mg/ml
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1,222,304 + +0.1
1,222,335 - +0.4
1,222,336 + -0.7
1,222,404 + +0.9
1,222,413 + -2.5
1,222,414 - +0.4
1,222,417 + -0.4
1,222,423 + -0.1
1,222,424 - +1.7
1,222,424 - +0.8
1,222,426 + -1.3
1,222,432 + -0.3
1,222,432 + -1.8
1,222,433 - +0.1
1,222,433 - +0.5
1,222,479 + -0.3
1,222,480 - +0.9
1,222,480 - +0.9
1,222,501 + -0.3
1,222,501 + -0.1
1,222,502 - +0.8
1,222,502 - -1.0
1,222,502 - +0.6
1,222,509 + -1.0
1,222,510 - +0.0
1,222,512 - -1.0
1,222,512 - +0.1
1,222,657 + -0.1
1,222,678 + -1.4
1,222,678 + -0.1
1,222,688 + -0.6
1,222,689 - +1.2
1,222,692 + +0.3
1,222,695 + +2.6
1,222,702 + +0.9
1,222,739 + +1.4
1,222,851 + +1.3
1,222,851 + +0.1
1,222,855 + -0.0
1,222,855 + +3.2
1,222,855 + +0.0
1,222,855 + +0.4
1,222,855 + +1.0
1,222,857 + -0.1
1,222,857 + -0.1
1,222,857 + -1.2
1,222,857 + -0.3
1,222,857 + -0.0
1,222,857 + -0.9
1,222,945 + +0.2
1,222,976 + +0.5
1,222,999 + -0.4
1,222,999 + +0.2
1,223,005 + -0.6
1,223,037 + +1.4
1,223,073 + -0.2
1,223,097 + -0.3
1,223,101 + +0.5
1,223,101 + -0.6
1,223,101 + -0.7
1,223,180 + Echvi_1062 0.13 +0.4
1,223,224 + Echvi_1062 0.19 +0.5
1,223,224 + +4.0
1,223,224 + Echvi_1062 0.19 +0.9
1,223,228 + Echvi_1062 0.20 -0.1
1,223,228 + Echvi_1062 0.20 +0.4
1,223,232 + Echvi_1062 0.20 +0.2
1,223,232 + Echvi_1062 0.20 +0.2
1,223,232 + Echvi_1062 0.20 -0.1
1,223,289 + Echvi_1062 0.28 -1.4
1,223,290 - Echvi_1062 0.28 +0.7
1,223,290 - Echvi_1062 0.28 +1.3
1,223,294 + Echvi_1062 0.28 +0.7
1,223,294 + Echvi_1062 0.28 +0.5
1,223,294 + Echvi_1062 0.28 +0.4
1,223,298 + Echvi_1062 0.29 -0.0
1,223,298 + Echvi_1062 0.29 +0.6
1,223,298 + Echvi_1062 0.29 -0.6
1,223,298 + Echvi_1062 0.29 +0.0
1,223,298 + Echvi_1062 0.29 -0.5
1,223,299 - Echvi_1062 0.29 -0.3
1,223,299 - Echvi_1062 0.29 +0.3
1,223,417 + Echvi_1062 0.44 -1.7
1,223,418 - Echvi_1062 0.44 -0.6
1,223,431 + Echvi_1062 0.46 -0.2
1,223,438 - Echvi_1062 0.47 +1.1
1,223,474 + Echvi_1062 0.52 +0.9
1,223,474 + Echvi_1062 0.52 +0.5
1,223,475 - Echvi_1062 0.52 +1.4
1,223,482 + Echvi_1062 0.53 -0.6
1,223,548 + Echvi_1062 0.61 +1.1
1,223,587 + Echvi_1062 0.67 -0.2
1,223,588 - Echvi_1062 0.67 -0.5
1,223,614 - Echvi_1062 0.70 -1.3
1,223,617 - Echvi_1062 0.70 +0.0
1,223,654 + Echvi_1062 0.75 +0.3
1,223,681 + Echvi_1062 0.79 +0.9
1,223,681 + Echvi_1062 0.79 +0.2
1,223,681 + Echvi_1062 0.79 +0.4
1,223,682 - Echvi_1062 0.79 -0.3
1,223,683 + Echvi_1062 0.79 +2.5
1,223,683 + Echvi_1062 0.79 -0.2
1,223,683 + Echvi_1062 0.79 +0.0
1,223,683 + Echvi_1062 0.79 -0.1
1,223,684 - Echvi_1062 0.79 -0.3
1,223,684 - Echvi_1062 0.79 +0.9
1,223,696 + Echvi_1062 0.81 -1.0
1,223,696 + Echvi_1062 0.81 +0.3
1,223,754 + Echvi_1062 0.88 +0.3
1,223,754 + Echvi_1062 0.88 +1.7
1,223,754 + Echvi_1062 0.88 +0.7
1,223,755 - Echvi_1062 0.88 -0.8
1,223,755 - Echvi_1062 0.88 -0.1
1,223,755 - Echvi_1062 0.88 -0.2
1,223,757 + Echvi_1062 0.89 +0.1
1,223,757 + Echvi_1062 0.89 +0.4
1,223,758 - Echvi_1062 0.89 -0.0
1,223,758 - Echvi_1062 0.89 +0.6
1,223,761 + Echvi_1062 0.89 +0.4
1,223,761 + Echvi_1062 0.89 -0.6
1,223,761 + Echvi_1062 0.89 +0.3
1,223,762 - Echvi_1062 0.89 -0.2
1,223,818 + -0.5
1,223,818 + +1.3
1,223,819 - -0.1
1,223,884 - +1.6
1,223,903 + -0.6
1,223,909 + -0.7
1,223,909 + +1.0
1,223,909 + -0.7
1,223,909 + -1.0
1,223,910 - +0.6
1,223,910 - -0.1
1,223,910 - -0.0
1,223,910 - +0.0
1,223,910 - -1.7
1,223,910 - +0.6
1,223,991 - Echvi_1063 0.15 -0.8
1,223,991 - Echvi_1063 0.15 -0.8
1,224,005 - Echvi_1063 0.17 +0.2
1,224,023 - Echvi_1063 0.19 +0.4
1,224,023 - Echvi_1063 0.19 +0.8
1,224,032 + Echvi_1063 0.20 -0.1
1,224,033 - Echvi_1063 0.20 +0.4
1,224,034 + Echvi_1063 0.20 +0.2
1,224,034 + Echvi_1063 0.20 -0.0
1,224,034 + Echvi_1063 0.20 -0.6
1,224,035 - Echvi_1063 0.20 +0.5
1,224,089 + Echvi_1063 0.27 +1.3
1,224,089 + Echvi_1063 0.27 +0.4
1,224,098 - Echvi_1063 0.28 -0.5
1,224,118 - Echvi_1063 0.31 +0.1
1,224,154 + Echvi_1063 0.35 -1.6
1,224,197 - Echvi_1063 0.40 +0.8
1,224,197 - Echvi_1063 0.40 +0.9
1,224,197 - Echvi_1063 0.40 +0.4
1,224,235 + Echvi_1063 0.45 +0.7
1,224,236 - Echvi_1063 0.45 +0.3
1,224,236 - Echvi_1063 0.45 +0.0
1,224,304 + Echvi_1063 0.54 +0.2
1,224,305 - Echvi_1063 0.54 -0.4
1,224,342 - Echvi_1063 0.58 +0.7
1,224,348 + Echvi_1063 0.59 +0.5
1,224,349 - Echvi_1063 0.59 -0.1
1,224,349 - Echvi_1063 0.59 -0.3
1,224,447 + Echvi_1063 0.71 -2.2
1,224,492 + Echvi_1063 0.77 -0.1
1,224,527 - Echvi_1063 0.81 -2.3
1,224,567 + Echvi_1063 0.86 -1.2
1,224,568 - Echvi_1063 0.86 +1.8
1,224,570 + Echvi_1063 0.86 -0.1
1,224,570 + Echvi_1063 0.86 -1.5
1,224,570 + Echvi_1063 0.86 -0.5
1,224,616 + +0.9
1,224,616 + +0.2
1,224,617 - -0.8
1,224,617 - +0.2
1,224,649 + +0.4
1,224,650 - +0.3
1,224,733 + -0.6
1,224,733 + -0.1
1,224,734 - +2.9
1,224,734 - -0.1
1,224,736 + +0.6
1,224,736 + +0.5
1,224,737 - +0.0
1,224,737 - +0.2
1,224,737 - +0.4
1,224,742 - -0.2
1,224,746 - -0.1
1,224,746 - -0.0
1,224,746 - +0.9
1,224,799 + -0.0
1,224,799 + +0.2
1,224,800 - -0.4
1,224,800 - -1.0
1,224,800 - +0.8
1,224,800 - -0.6
1,224,807 + -0.2
1,224,807 + -0.1
1,224,807 + -0.3
1,224,807 + -1.4
1,224,808 - +0.3
1,224,811 + -1.0
1,224,812 - +0.4
1,224,812 - +0.7
1,224,818 + +0.1
1,224,818 + +0.1
1,224,819 - -0.4
1,224,819 - +1.7
1,224,819 - +1.0
1,224,819 - -0.2
1,224,825 + +0.5
1,224,825 + -0.2
1,224,840 - +0.4

Or see this region's nucleotide sequence