Experiment: 150_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS24005 and AMB_RS23235 are separated by 159 nucleotides AMB_RS23235 and AMB_RS23720 overlap by 4 nucleotides
AMB_RS24005: AMB_RS24005 - PAS domain-containing sensor histidine kinase, at 1,178,210 to 1,179,724
_RS24005
AMB_RS23235: AMB_RS23235 - DUF3369 domain-containing protein, at 1,179,884 to 1,182,814
_RS23235
AMB_RS23720: AMB_RS23720 - HAMP domain-containing protein, at 1,182,811 to 1,185,117
_RS23720
Position (kb) 1179
1180
1181
1182
1183 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1178.971 kb on + strand, within AMB_RS24005 at 1179.059 kb on + strand, within AMB_RS24005 at 1179.059 kb on + strand, within AMB_RS24005 at 1179.059 kb on + strand, within AMB_RS24005 at 1179.060 kb on - strand, within AMB_RS24005 at 1179.060 kb on - strand, within AMB_RS24005 at 1179.107 kb on + strand, within AMB_RS24005 at 1179.196 kb on + strand, within AMB_RS24005 at 1179.196 kb on + strand, within AMB_RS24005 at 1179.196 kb on + strand, within AMB_RS24005 at 1179.197 kb on - strand, within AMB_RS24005 at 1179.197 kb on - strand, within AMB_RS24005 at 1179.197 kb on - strand, within AMB_RS24005 at 1179.197 kb on - strand, within AMB_RS24005 at 1179.197 kb on - strand, within AMB_RS24005 at 1179.197 kb on - strand, within AMB_RS24005 at 1179.197 kb on - strand, within AMB_RS24005 at 1179.426 kb on - strand, within AMB_RS24005 at 1179.426 kb on - strand, within AMB_RS24005 at 1179.426 kb on - strand, within AMB_RS24005 at 1179.534 kb on - strand, within AMB_RS24005 at 1179.751 kb on + strand at 1179.751 kb on + strand at 1179.752 kb on - strand at 1179.752 kb on - strand at 1179.850 kb on - strand at 1179.850 kb on - strand at 1179.900 kb on + strand at 1179.900 kb on + strand at 1179.900 kb on + strand at 1179.901 kb on - strand at 1179.901 kb on - strand at 1179.901 kb on - strand at 1179.901 kb on - strand at 1179.901 kb on - strand at 1179.956 kb on - strand at 1180.055 kb on + strand at 1180.056 kb on - strand at 1180.056 kb on - strand at 1180.163 kb on + strand at 1180.163 kb on + strand at 1180.163 kb on + strand at 1180.163 kb on + strand at 1180.163 kb on + strand at 1180.163 kb on + strand at 1180.163 kb on + strand at 1180.163 kb on + strand at 1180.164 kb on - strand at 1180.164 kb on - strand at 1180.164 kb on - strand at 1180.164 kb on - strand at 1180.164 kb on - strand at 1180.271 kb on + strand, within AMB_RS23235 at 1180.271 kb on + strand, within AMB_RS23235 at 1180.272 kb on - strand, within AMB_RS23235 at 1180.338 kb on - strand, within AMB_RS23235 at 1180.682 kb on + strand, within AMB_RS23235 at 1180.683 kb on - strand, within AMB_RS23235 at 1180.701 kb on - strand, within AMB_RS23235 at 1180.718 kb on + strand, within AMB_RS23235 at 1180.718 kb on + strand, within AMB_RS23235 at 1180.718 kb on + strand, within AMB_RS23235 at 1180.718 kb on + strand, within AMB_RS23235 at 1180.718 kb on + strand, within AMB_RS23235 at 1180.718 kb on + strand, within AMB_RS23235 at 1180.718 kb on + strand, within AMB_RS23235 at 1180.719 kb on - strand, within AMB_RS23235 at 1180.719 kb on - strand, within AMB_RS23235 at 1180.719 kb on - strand, within AMB_RS23235 at 1180.719 kb on - strand, within AMB_RS23235 at 1180.719 kb on - strand, within AMB_RS23235 at 1180.719 kb on - strand, within AMB_RS23235 at 1180.797 kb on - strand, within AMB_RS23235 at 1180.865 kb on + strand, within AMB_RS23235 at 1180.931 kb on + strand, within AMB_RS23235 at 1180.931 kb on + strand, within AMB_RS23235 at 1180.931 kb on + strand, within AMB_RS23235 at 1180.932 kb on - strand, within AMB_RS23235 at 1180.932 kb on - strand, within AMB_RS23235 at 1180.932 kb on - strand, within AMB_RS23235 at 1180.932 kb on - strand, within AMB_RS23235 at 1180.932 kb on - strand, within AMB_RS23235 at 1181.153 kb on + strand, within AMB_RS23235 at 1181.220 kb on - strand, within AMB_RS23235 at 1181.382 kb on - strand, within AMB_RS23235 at 1181.382 kb on - strand, within AMB_RS23235 at 1182.146 kb on + strand, within AMB_RS23235 at 1182.147 kb on - strand, within AMB_RS23235 at 1182.500 kb on + strand, within AMB_RS23235 at 1182.501 kb on - strand, within AMB_RS23235 at 1182.501 kb on - strand, within AMB_RS23235 at 1182.501 kb on - strand, within AMB_RS23235 at 1182.853 kb on + strand at 1182.853 kb on + strand at 1182.854 kb on - strand at 1182.854 kb on - strand at 1182.854 kb on - strand at 1182.854 kb on - strand at 1182.910 kb on + strand at 1182.910 kb on + strand at 1182.910 kb on + strand at 1182.910 kb on + strand at 1182.910 kb on + strand at 1182.911 kb on - strand at 1182.911 kb on - strand at 1182.911 kb on - strand at 1182.911 kb on - strand at 1182.955 kb on + strand at 1182.955 kb on + strand at 1182.955 kb on + strand at 1182.956 kb on - strand at 1182.956 kb on - strand at 1182.956 kb on - strand at 1183.003 kb on - strand at 1183.051 kb on + strand, within AMB_RS23720 at 1183.051 kb on + strand, within AMB_RS23720 at 1183.052 kb on - strand, within AMB_RS23720 at 1183.052 kb on - strand, within AMB_RS23720 at 1183.235 kb on - strand, within AMB_RS23720 at 1183.235 kb on - strand, within AMB_RS23720 at 1183.237 kb on + strand, within AMB_RS23720 at 1183.237 kb on + strand, within AMB_RS23720 at 1183.237 kb on + strand, within AMB_RS23720 at 1183.237 kb on + strand, within AMB_RS23720 at 1183.238 kb on - strand, within AMB_RS23720 at 1183.423 kb on + strand, within AMB_RS23720 at 1183.578 kb on + strand, within AMB_RS23720 at 1183.579 kb on - strand, within AMB_RS23720 at 1183.807 kb on + strand, within AMB_RS23720 at 1183.807 kb on + strand, within AMB_RS23720 at 1183.808 kb on - strand, within AMB_RS23720 at 1183.808 kb on - strand, within AMB_RS23720
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_2 remove 1,178,971 + AMB_RS24005 0.50 -0.6 1,179,059 + AMB_RS24005 0.56 +1.0 1,179,059 + AMB_RS24005 0.56 -1.2 1,179,059 + AMB_RS24005 0.56 -1.6 1,179,060 - AMB_RS24005 0.56 -1.8 1,179,060 - AMB_RS24005 0.56 -0.3 1,179,107 + AMB_RS24005 0.59 +0.7 1,179,196 + AMB_RS24005 0.65 -1.6 1,179,196 + AMB_RS24005 0.65 +0.0 1,179,196 + AMB_RS24005 0.65 +0.0 1,179,197 - AMB_RS24005 0.65 +0.1 1,179,197 - AMB_RS24005 0.65 +0.1 1,179,197 - AMB_RS24005 0.65 -1.6 1,179,197 - AMB_RS24005 0.65 -0.9 1,179,197 - AMB_RS24005 0.65 -1.2 1,179,197 - AMB_RS24005 0.65 -1.1 1,179,197 - AMB_RS24005 0.65 -0.1 1,179,426 - AMB_RS24005 0.80 -0.1 1,179,426 - AMB_RS24005 0.80 +0.4 1,179,426 - AMB_RS24005 0.80 -0.6 1,179,534 - AMB_RS24005 0.87 +1.5 1,179,751 + +0.1 1,179,751 + -1.5 1,179,752 - +0.1 1,179,752 - -1.7 1,179,850 - +1.3 1,179,850 - -2.1 1,179,900 + -0.0 1,179,900 + +0.1 1,179,900 + +0.8 1,179,901 - -0.2 1,179,901 - -0.5 1,179,901 - +1.0 1,179,901 - +0.1 1,179,901 - -0.5 1,179,956 - -0.4 1,180,055 + -0.2 1,180,056 - +0.1 1,180,056 - -0.3 1,180,163 + -1.3 1,180,163 + -0.3 1,180,163 + -0.9 1,180,163 + -0.8 1,180,163 + -0.3 1,180,163 + +1.3 1,180,163 + -1.5 1,180,163 + -0.1 1,180,164 - -0.4 1,180,164 - -0.1 1,180,164 - +1.0 1,180,164 - -0.8 1,180,164 - -0.3 1,180,271 + AMB_RS23235 0.13 +0.0 1,180,271 + AMB_RS23235 0.13 -2.2 1,180,272 - AMB_RS23235 0.13 -0.3 1,180,338 - AMB_RS23235 0.15 +0.1 1,180,682 + AMB_RS23235 0.27 +0.9 1,180,683 - AMB_RS23235 0.27 -1.0 1,180,701 - AMB_RS23235 0.28 -0.5 1,180,718 + AMB_RS23235 0.28 -0.2 1,180,718 + AMB_RS23235 0.28 -0.3 1,180,718 + AMB_RS23235 0.28 -0.4 1,180,718 + AMB_RS23235 0.28 +0.2 1,180,718 + AMB_RS23235 0.28 +0.8 1,180,718 + AMB_RS23235 0.28 -0.0 1,180,718 + AMB_RS23235 0.28 -0.3 1,180,719 - AMB_RS23235 0.28 -0.0 1,180,719 - AMB_RS23235 0.28 +0.1 1,180,719 - AMB_RS23235 0.28 -0.7 1,180,719 - AMB_RS23235 0.28 -0.5 1,180,719 - AMB_RS23235 0.28 -3.0 1,180,719 - AMB_RS23235 0.28 -0.9 1,180,797 - AMB_RS23235 0.31 -0.1 1,180,865 + AMB_RS23235 0.33 +0.2 1,180,931 + AMB_RS23235 0.36 +0.9 1,180,931 + AMB_RS23235 0.36 +2.2 1,180,931 + AMB_RS23235 0.36 -0.2 1,180,932 - AMB_RS23235 0.36 -1.0 1,180,932 - AMB_RS23235 0.36 -0.4 1,180,932 - AMB_RS23235 0.36 -0.4 1,180,932 - AMB_RS23235 0.36 -0.2 1,180,932 - AMB_RS23235 0.36 +0.1 1,181,153 + AMB_RS23235 0.43 -1.0 1,181,220 - AMB_RS23235 0.46 -0.3 1,181,382 - AMB_RS23235 0.51 -2.2 1,181,382 - AMB_RS23235 0.51 +1.0 1,182,146 + AMB_RS23235 0.77 -1.5 1,182,147 - AMB_RS23235 0.77 +0.1 1,182,500 + AMB_RS23235 0.89 -0.9 1,182,501 - AMB_RS23235 0.89 -1.5 1,182,501 - AMB_RS23235 0.89 -0.7 1,182,501 - AMB_RS23235 0.89 -1.2 1,182,853 + -0.2 1,182,853 + -1.3 1,182,854 - +0.2 1,182,854 - -0.6 1,182,854 - -0.2 1,182,854 - -0.6 1,182,910 + +1.1 1,182,910 + +0.1 1,182,910 + -0.3 1,182,910 + -0.6 1,182,910 + -0.7 1,182,911 - -0.2 1,182,911 - +0.1 1,182,911 - -0.2 1,182,911 - +0.1 1,182,955 + +0.5 1,182,955 + -0.4 1,182,955 + -0.1 1,182,956 - +0.1 1,182,956 - -0.7 1,182,956 - +1.7 1,183,003 - -1.0 1,183,051 + AMB_RS23720 0.10 -0.7 1,183,051 + AMB_RS23720 0.10 +1.1 1,183,052 - AMB_RS23720 0.10 -0.3 1,183,052 - AMB_RS23720 0.10 -0.9 1,183,235 - AMB_RS23720 0.18 -0.3 1,183,235 - AMB_RS23720 0.18 -0.8 1,183,237 + AMB_RS23720 0.18 -1.6 1,183,237 + AMB_RS23720 0.18 +1.4 1,183,237 + AMB_RS23720 0.18 -0.1 1,183,237 + AMB_RS23720 0.18 +0.4 1,183,238 - AMB_RS23720 0.19 -0.3 1,183,423 + AMB_RS23720 0.27 -0.4 1,183,578 + AMB_RS23720 0.33 +0.1 1,183,579 - AMB_RS23720 0.33 +0.1 1,183,807 + AMB_RS23720 0.43 -0.4 1,183,807 + AMB_RS23720 0.43 +0.8 1,183,808 - AMB_RS23720 0.43 -0.3 1,183,808 - AMB_RS23720 0.43 -0.1
Or see this region's nucleotide sequence