Experiment: 150_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22895 and AMB_RS22900 are separated by 212 nucleotides AMB_RS22900 and AMB_RS22905 are separated by 84 nucleotides AMB_RS22905 and AMB_RS22910 are separated by 92 nucleotides AMB_RS22910 and AMB_RS22915 are separated by 100 nucleotides
AMB_RS22895: AMB_RS22895 - hypothetical protein, at 4,939,425 to 4,939,961
_RS22895
AMB_RS22900: AMB_RS22900 - hypothetical protein, at 4,940,174 to 4,940,380
_RS22900
AMB_RS22905: AMB_RS22905 - ATPase, at 4,940,465 to 4,941,076
_RS22905
AMB_RS22910: AMB_RS22910 - hypothetical protein, at 4,941,169 to 4,941,825
_RS22910
AMB_RS22915: AMB_RS22915 - histidine triad nucleotide-binding protein, at 4,941,926 to 4,942,294
_RS22915
Position (kb) 4940
4941
4942 Strain fitness (log2 ratio) -2
-1
0
1 at 4939.592 kb on - strand, within AMB_RS22895 at 4939.594 kb on + strand, within AMB_RS22895 at 4939.594 kb on + strand, within AMB_RS22895 at 4939.595 kb on - strand, within AMB_RS22895 at 4939.621 kb on + strand, within AMB_RS22895 at 4939.621 kb on + strand, within AMB_RS22895 at 4939.621 kb on + strand, within AMB_RS22895 at 4939.621 kb on + strand, within AMB_RS22895 at 4939.621 kb on + strand, within AMB_RS22895 at 4939.622 kb on - strand, within AMB_RS22895 at 4939.622 kb on - strand, within AMB_RS22895 at 4939.622 kb on - strand, within AMB_RS22895 at 4939.622 kb on - strand, within AMB_RS22895 at 4939.622 kb on - strand, within AMB_RS22895 at 4939.622 kb on - strand, within AMB_RS22895 at 4939.622 kb on - strand, within AMB_RS22895 at 4939.657 kb on + strand, within AMB_RS22895 at 4939.657 kb on + strand, within AMB_RS22895 at 4939.657 kb on + strand, within AMB_RS22895 at 4939.658 kb on - strand, within AMB_RS22895 at 4939.658 kb on - strand, within AMB_RS22895 at 4939.658 kb on - strand, within AMB_RS22895 at 4939.658 kb on - strand, within AMB_RS22895 at 4940.463 kb on + strand at 4940.558 kb on + strand, within AMB_RS22905 at 4940.559 kb on - strand, within AMB_RS22905 at 4941.044 kb on + strand at 4941.347 kb on - strand, within AMB_RS22910 at 4941.347 kb on - strand, within AMB_RS22910 at 4941.347 kb on - strand, within AMB_RS22910 at 4941.347 kb on - strand, within AMB_RS22910 at 4941.347 kb on - strand, within AMB_RS22910 at 4941.491 kb on - strand, within AMB_RS22910 at 4941.502 kb on + strand, within AMB_RS22910 at 4941.590 kb on + strand, within AMB_RS22910 at 4941.591 kb on - strand, within AMB_RS22910 at 4941.623 kb on - strand, within AMB_RS22910 at 4941.679 kb on + strand, within AMB_RS22910 at 4941.679 kb on + strand, within AMB_RS22910 at 4941.679 kb on + strand, within AMB_RS22910 at 4941.679 kb on + strand, within AMB_RS22910 at 4941.679 kb on + strand, within AMB_RS22910 at 4941.679 kb on + strand, within AMB_RS22910 at 4941.679 kb on + strand, within AMB_RS22910 at 4941.679 kb on + strand, within AMB_RS22910 at 4941.679 kb on + strand, within AMB_RS22910 at 4941.680 kb on - strand, within AMB_RS22910 at 4941.681 kb on + strand, within AMB_RS22910 at 4941.775 kb on - strand at 4941.775 kb on - strand at 4941.775 kb on - strand at 4941.824 kb on - strand at 4941.885 kb on + strand at 4941.886 kb on - strand at 4941.886 kb on - strand at 4941.886 kb on - strand at 4941.923 kb on - strand at 4941.923 kb on - strand at 4942.021 kb on + strand, within AMB_RS22915 at 4942.022 kb on - strand, within AMB_RS22915
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_2 remove 4,939,592 - AMB_RS22895 0.31 +0.8 4,939,594 + AMB_RS22895 0.31 -0.9 4,939,594 + AMB_RS22895 0.31 -2.1 4,939,595 - AMB_RS22895 0.32 +1.4 4,939,621 + AMB_RS22895 0.36 -0.1 4,939,621 + AMB_RS22895 0.36 -0.7 4,939,621 + AMB_RS22895 0.36 -0.8 4,939,621 + AMB_RS22895 0.36 +0.8 4,939,621 + AMB_RS22895 0.36 -2.1 4,939,622 - AMB_RS22895 0.37 -0.6 4,939,622 - AMB_RS22895 0.37 -0.7 4,939,622 - AMB_RS22895 0.37 -0.2 4,939,622 - AMB_RS22895 0.37 +1.1 4,939,622 - AMB_RS22895 0.37 -0.4 4,939,622 - AMB_RS22895 0.37 +1.2 4,939,622 - AMB_RS22895 0.37 -0.9 4,939,657 + AMB_RS22895 0.43 -0.6 4,939,657 + AMB_RS22895 0.43 +0.4 4,939,657 + AMB_RS22895 0.43 +0.0 4,939,658 - AMB_RS22895 0.43 -0.8 4,939,658 - AMB_RS22895 0.43 -1.3 4,939,658 - AMB_RS22895 0.43 -0.4 4,939,658 - AMB_RS22895 0.43 -0.3 4,940,463 + -0.2 4,940,558 + AMB_RS22905 0.15 -0.0 4,940,559 - AMB_RS22905 0.15 +0.1 4,941,044 + +0.2 4,941,347 - AMB_RS22910 0.27 +0.1 4,941,347 - AMB_RS22910 0.27 -0.3 4,941,347 - AMB_RS22910 0.27 -0.8 4,941,347 - AMB_RS22910 0.27 -0.3 4,941,347 - AMB_RS22910 0.27 +0.3 4,941,491 - AMB_RS22910 0.49 -0.3 4,941,502 + AMB_RS22910 0.51 +0.2 4,941,590 + AMB_RS22910 0.64 -0.1 4,941,591 - AMB_RS22910 0.64 +0.3 4,941,623 - AMB_RS22910 0.69 -0.3 4,941,679 + AMB_RS22910 0.78 -0.2 4,941,679 + AMB_RS22910 0.78 +0.1 4,941,679 + AMB_RS22910 0.78 -0.2 4,941,679 + AMB_RS22910 0.78 +0.7 4,941,679 + AMB_RS22910 0.78 -0.5 4,941,679 + AMB_RS22910 0.78 -1.2 4,941,679 + AMB_RS22910 0.78 +0.0 4,941,679 + AMB_RS22910 0.78 -0.5 4,941,679 + AMB_RS22910 0.78 -0.9 4,941,680 - AMB_RS22910 0.78 +0.3 4,941,681 + AMB_RS22910 0.78 +0.4 4,941,775 - -0.3 4,941,775 - +0.0 4,941,775 - -1.2 4,941,824 - -0.2 4,941,885 + -0.2 4,941,886 - +0.9 4,941,886 - -0.1 4,941,886 - +1.3 4,941,923 - -0.2 4,941,923 - -1.0 4,942,021 + AMB_RS22915 0.26 -0.6 4,942,022 - AMB_RS22915 0.26 -0.9
Or see this region's nucleotide sequence