Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22160

Experiment: 150_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22150 and AMB_RS22155 are separated by 46 nucleotidesAMB_RS22155 and AMB_RS22160 are separated by 9 nucleotidesAMB_RS22160 and AMB_RS22165 overlap by 4 nucleotides AMB_RS22150: AMB_RS22150 - MarR family transcriptional regulator, at 4,781,134 to 4,781,583 _RS22150 AMB_RS22155: AMB_RS22155 - histidine phosphatase family protein, at 4,781,630 to 4,782,223 _RS22155 AMB_RS22160: AMB_RS22160 - phenylalanine--tRNA ligase subunit beta, at 4,782,233 to 4,784,629 _RS22160 AMB_RS22165: AMB_RS22165 - phenylalanine--tRNA ligase subunit alpha, at 4,784,626 to 4,785,701 _RS22165 Position (kb) 4782 4783 4784 4785Strain fitness (log2 ratio) -1 0 1at 4781.267 kb on - strand, within AMB_RS22150at 4781.400 kb on - strand, within AMB_RS22150at 4781.583 kb on + strandat 4781.631 kb on + strandat 4781.675 kb on + strandat 4781.731 kb on - strand, within AMB_RS22155at 4781.950 kb on + strand, within AMB_RS22155

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_2
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4,781,267 - AMB_RS22150 0.30 -0.6
4,781,400 - AMB_RS22150 0.59 -1.0
4,781,583 + -0.4
4,781,631 + +1.7
4,781,675 + -0.6
4,781,731 - AMB_RS22155 0.17 +0.0
4,781,950 + AMB_RS22155 0.54 -0.3

Or see this region's nucleotide sequence