Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22020

Experiment: 150_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22015 and AMB_RS22020 are separated by 299 nucleotidesAMB_RS22020 and AMB_RS22025 are separated by 6 nucleotidesAMB_RS22025 and AMB_RS22030 are separated by 138 nucleotidesAMB_RS22030 and AMB_RS22035 are separated by 6 nucleotides AMB_RS22015: AMB_RS22015 - methyltransferase domain-containing protein, at 4,756,303 to 4,757,073 _RS22015 AMB_RS22020: AMB_RS22020 - 50S ribosomal protein L34, at 4,757,373 to 4,757,507 _RS22020 AMB_RS22025: AMB_RS22025 - ribonuclease P protein component, at 4,757,514 to 4,757,915 _RS22025 AMB_RS22030: AMB_RS22030 - membrane protein insertion efficiency factor YidD, at 4,758,054 to 4,758,323 _RS22030 AMB_RS22035: AMB_RS22035 - membrane protein insertase YidC, at 4,758,330 to 4,760,069 _RS22035 Position (kb) 4757 4758Strain fitness (log2 ratio) -2 -1 0 1 2at 4756.398 kb on - strand, within AMB_RS22015at 4756.398 kb on - strand, within AMB_RS22015at 4756.511 kb on + strand, within AMB_RS22015at 4756.512 kb on - strand, within AMB_RS22015at 4756.512 kb on - strand, within AMB_RS22015at 4756.512 kb on - strand, within AMB_RS22015at 4756.533 kb on + strand, within AMB_RS22015at 4756.562 kb on + strand, within AMB_RS22015at 4756.562 kb on + strand, within AMB_RS22015at 4756.562 kb on + strand, within AMB_RS22015at 4756.563 kb on - strand, within AMB_RS22015at 4756.563 kb on - strand, within AMB_RS22015at 4756.563 kb on - strand, within AMB_RS22015at 4756.565 kb on + strand, within AMB_RS22015at 4756.565 kb on + strand, within AMB_RS22015at 4756.565 kb on + strand, within AMB_RS22015at 4756.566 kb on - strand, within AMB_RS22015at 4756.566 kb on - strand, within AMB_RS22015at 4756.566 kb on - strand, within AMB_RS22015at 4756.566 kb on - strand, within AMB_RS22015at 4756.566 kb on - strand, within AMB_RS22015at 4756.670 kb on + strand, within AMB_RS22015at 4756.670 kb on + strand, within AMB_RS22015at 4756.671 kb on - strand, within AMB_RS22015at 4756.671 kb on - strand, within AMB_RS22015at 4756.929 kb on + strand, within AMB_RS22015at 4756.930 kb on - strand, within AMB_RS22015at 4756.935 kb on + strand, within AMB_RS22015at 4756.935 kb on + strand, within AMB_RS22015at 4757.051 kb on + strandat 4757.052 kb on - strandat 4757.052 kb on - strandat 4757.127 kb on + strandat 4757.128 kb on - strandat 4757.144 kb on + strandat 4757.145 kb on - strandat 4757.145 kb on - strandat 4757.145 kb on - strandat 4757.278 kb on + strandat 4757.965 kb on + strandat 4757.965 kb on + strandat 4758.255 kb on + strand, within AMB_RS22030at 4758.255 kb on + strand, within AMB_RS22030at 4758.321 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_2
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4,756,398 - AMB_RS22015 0.12 -0.3
4,756,398 - AMB_RS22015 0.12 -0.2
4,756,511 + AMB_RS22015 0.27 -0.1
4,756,512 - AMB_RS22015 0.27 +0.2
4,756,512 - AMB_RS22015 0.27 +1.4
4,756,512 - AMB_RS22015 0.27 -0.0
4,756,533 + AMB_RS22015 0.30 -0.3
4,756,562 + AMB_RS22015 0.34 -0.7
4,756,562 + AMB_RS22015 0.34 +0.1
4,756,562 + AMB_RS22015 0.34 +0.8
4,756,563 - AMB_RS22015 0.34 +0.2
4,756,563 - AMB_RS22015 0.34 -0.1
4,756,563 - AMB_RS22015 0.34 -0.3
4,756,565 + AMB_RS22015 0.34 +0.1
4,756,565 + AMB_RS22015 0.34 -1.8
4,756,565 + AMB_RS22015 0.34 +0.3
4,756,566 - AMB_RS22015 0.34 +0.6
4,756,566 - AMB_RS22015 0.34 -0.1
4,756,566 - AMB_RS22015 0.34 -0.1
4,756,566 - AMB_RS22015 0.34 -0.4
4,756,566 - AMB_RS22015 0.34 -0.9
4,756,670 + AMB_RS22015 0.48 +0.6
4,756,670 + AMB_RS22015 0.48 -1.0
4,756,671 - AMB_RS22015 0.48 -0.1
4,756,671 - AMB_RS22015 0.48 +1.0
4,756,929 + AMB_RS22015 0.81 -0.8
4,756,930 - AMB_RS22015 0.81 +0.6
4,756,935 + AMB_RS22015 0.82 +0.3
4,756,935 + AMB_RS22015 0.82 -0.4
4,757,051 + +0.6
4,757,052 - -0.3
4,757,052 - -0.3
4,757,127 + -1.3
4,757,128 - -0.1
4,757,144 + +0.2
4,757,145 - +0.5
4,757,145 - +0.6
4,757,145 - -0.1
4,757,278 + -0.2
4,757,965 + -1.7
4,757,965 + -0.0
4,758,255 + AMB_RS22030 0.74 +2.7
4,758,255 + AMB_RS22030 0.74 -0.1
4,758,321 + -0.9

Or see this region's nucleotide sequence