Experiment: 150_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21880 and AMB_RS21885 overlap by 4 nucleotides AMB_RS21885 and AMB_RS21890 are separated by 117 nucleotides AMB_RS21890 and AMB_RS21895 overlap by 4 nucleotides
AMB_RS21880: AMB_RS21880 - glycosyl transferase family 1, at 4,730,768 to 4,733,289
_RS21880
AMB_RS21885: AMB_RS21885 - ABC transporter, at 4,733,286 to 4,733,975
_RS21885
AMB_RS21890: AMB_RS21890 - arylesterase, at 4,734,093 to 4,734,668
_RS21890
AMB_RS21895: AMB_RS21895 - hypothetical protein, at 4,734,665 to 4,735,768
_RS21895
Position (kb) 4734
4735 Strain fitness (log2 ratio) -2
-1
0
1 at 4733.327 kb on + strand at 4734.019 kb on + strand at 4734.019 kb on + strand at 4734.019 kb on + strand at 4734.020 kb on - strand at 4734.454 kb on - strand, within AMB_RS21890 at 4734.525 kb on + strand, within AMB_RS21890 at 4734.526 kb on - strand, within AMB_RS21890 at 4734.526 kb on - strand, within AMB_RS21890 at 4734.782 kb on + strand, within AMB_RS21895 at 4735.356 kb on - strand, within AMB_RS21895 at 4735.586 kb on + strand, within AMB_RS21895 at 4735.586 kb on + strand, within AMB_RS21895 at 4735.586 kb on + strand, within AMB_RS21895 at 4735.587 kb on - strand, within AMB_RS21895 at 4735.587 kb on - strand, within AMB_RS21895 at 4735.613 kb on + strand, within AMB_RS21895 at 4735.613 kb on + strand, within AMB_RS21895 at 4735.613 kb on + strand, within AMB_RS21895 at 4735.613 kb on + strand, within AMB_RS21895 at 4735.613 kb on + strand, within AMB_RS21895 at 4735.613 kb on + strand, within AMB_RS21895 at 4735.613 kb on + strand, within AMB_RS21895 at 4735.614 kb on - strand, within AMB_RS21895 at 4735.614 kb on - strand, within AMB_RS21895 at 4735.614 kb on - strand, within AMB_RS21895 at 4735.614 kb on - strand, within AMB_RS21895 at 4735.614 kb on - strand, within AMB_RS21895 at 4735.614 kb on - strand, within AMB_RS21895 at 4735.614 kb on - strand, within AMB_RS21895 at 4735.614 kb on - strand, within AMB_RS21895
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_2 remove 4,733,327 + +1.1 4,734,019 + -1.5 4,734,019 + -0.1 4,734,019 + -0.3 4,734,020 - -0.2 4,734,454 - AMB_RS21890 0.63 -0.1 4,734,525 + AMB_RS21890 0.75 +1.5 4,734,526 - AMB_RS21890 0.75 +0.8 4,734,526 - AMB_RS21890 0.75 -0.1 4,734,782 + AMB_RS21895 0.11 -0.6 4,735,356 - AMB_RS21895 0.63 -0.4 4,735,586 + AMB_RS21895 0.83 -1.3 4,735,586 + AMB_RS21895 0.83 -2.0 4,735,586 + AMB_RS21895 0.83 +0.9 4,735,587 - AMB_RS21895 0.84 -0.1 4,735,587 - AMB_RS21895 0.84 -1.0 4,735,613 + AMB_RS21895 0.86 +1.1 4,735,613 + AMB_RS21895 0.86 -0.1 4,735,613 + AMB_RS21895 0.86 -0.1 4,735,613 + AMB_RS21895 0.86 +0.3 4,735,613 + AMB_RS21895 0.86 +0.1 4,735,613 + AMB_RS21895 0.86 -0.9 4,735,613 + AMB_RS21895 0.86 -0.7 4,735,614 - AMB_RS21895 0.86 -2.6 4,735,614 - AMB_RS21895 0.86 -0.4 4,735,614 - AMB_RS21895 0.86 -0.3 4,735,614 - AMB_RS21895 0.86 +0.7 4,735,614 - AMB_RS21895 0.86 +0.7 4,735,614 - AMB_RS21895 0.86 +0.6 4,735,614 - AMB_RS21895 0.86 +0.1 4,735,614 - AMB_RS21895 0.86 -0.2
Or see this region's nucleotide sequence