Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21480

Experiment: 150_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS21475 and AMB_RS21480 overlap by 8 nucleotidesAMB_RS21480 and AMB_RS21485 overlap by 4 nucleotides AMB_RS21475: AMB_RS21475 - aminoglycoside phosphotransferase, at 4,657,902 to 4,658,894 _RS21475 AMB_RS21480: AMB_RS21480 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 4,658,887 to 4,659,357 _RS21480 AMB_RS21485: AMB_RS21485 - tyrosine recombinase XerC, at 4,659,354 to 4,660,298 _RS21485 Position (kb) 4658 4659 4660Strain fitness (log2 ratio) -1 0 1at 4659.815 kb on - strand, within AMB_RS21485

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_2
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4,659,815 - AMB_RS21485 0.49 -1.7

Or see this region's nucleotide sequence