Experiment: 150_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21085 and AMB_RS21090 are separated by 1 nucleotides AMB_RS21090 and AMB_RS21095 are separated by 7 nucleotides AMB_RS21095 and AMB_RS21100 are separated by 101 nucleotides AMB_RS21100 and AMB_RS21105 overlap by 58 nucleotides
AMB_RS21085: AMB_RS21085 - DUF1330 domain-containing protein, at 4,583,092 to 4,583,382
_RS21085
AMB_RS21090: AMB_RS21090 - prephenate dehydratase, at 4,583,384 to 4,584,253
_RS21090
AMB_RS21095: AMB_RS21095 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 4,584,261 to 4,585,001
_RS21095
AMB_RS21100: AMB_RS21100 - histidinol-phosphatase, at 4,585,103 to 4,585,879
_RS21100
AMB_RS21105: AMB_RS21105 - endonuclease III, at 4,585,822 to 4,586,511
_RS21105
Position (kb) 4584
4585
4586 Strain fitness (log2 ratio) -1
0
1 at 4583.314 kb on + strand, within AMB_RS21085 at 4583.315 kb on - strand, within AMB_RS21085 at 4583.315 kb on - strand, within AMB_RS21085 at 4583.315 kb on - strand, within AMB_RS21085 at 4583.315 kb on - strand, within AMB_RS21085 at 4583.386 kb on - strand at 4583.386 kb on - strand at 4583.386 kb on - strand at 4583.386 kb on - strand at 4583.386 kb on - strand at 4583.386 kb on - strand at 4585.026 kb on - strand at 4585.026 kb on - strand at 4585.026 kb on - strand at 4585.030 kb on - strand at 4585.030 kb on - strand at 4585.030 kb on - strand at 4585.030 kb on - strand at 4585.033 kb on - strand at 4585.903 kb on + strand, within AMB_RS21105 at 4585.903 kb on + strand, within AMB_RS21105 at 4585.903 kb on + strand, within AMB_RS21105 at 4585.903 kb on + strand, within AMB_RS21105 at 4585.904 kb on - strand, within AMB_RS21105 at 4585.951 kb on + strand, within AMB_RS21105 at 4585.952 kb on - strand, within AMB_RS21105 at 4585.963 kb on + strand, within AMB_RS21105 at 4585.964 kb on - strand, within AMB_RS21105 at 4585.964 kb on - strand, within AMB_RS21105
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_2 remove 4,583,314 + AMB_RS21085 0.76 -0.3 4,583,315 - AMB_RS21085 0.77 +1.1 4,583,315 - AMB_RS21085 0.77 +0.3 4,583,315 - AMB_RS21085 0.77 -0.0 4,583,315 - AMB_RS21085 0.77 -0.0 4,583,386 - +0.0 4,583,386 - -0.3 4,583,386 - +0.6 4,583,386 - +0.4 4,583,386 - -0.9 4,583,386 - -0.1 4,585,026 - -0.0 4,585,026 - -0.1 4,585,026 - +0.5 4,585,030 - -0.3 4,585,030 - +0.1 4,585,030 - -0.1 4,585,030 - +0.1 4,585,033 - -0.5 4,585,903 + AMB_RS21105 0.12 -0.3 4,585,903 + AMB_RS21105 0.12 +0.1 4,585,903 + AMB_RS21105 0.12 -0.2 4,585,903 + AMB_RS21105 0.12 -0.1 4,585,904 - AMB_RS21105 0.12 -0.5 4,585,951 + AMB_RS21105 0.19 -0.1 4,585,952 - AMB_RS21105 0.19 -0.7 4,585,963 + AMB_RS21105 0.20 +0.1 4,585,964 - AMB_RS21105 0.21 +0.3 4,585,964 - AMB_RS21105 0.21 +1.5
Or see this region's nucleotide sequence