Experiment: 150_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS11780 and AMB_RS11785 are separated by 286 nucleotides AMB_RS11785 and AMB_RS11790 are separated by 78 nucleotides
AMB_RS11780: AMB_RS11780 - glutamate synthase subunit beta, at 2,537,699 to 2,539,117
_RS11780
AMB_RS11785: AMB_RS11785 - HAMP domain-containing protein, at 2,539,404 to 2,541,134
_RS11785
AMB_RS11790: AMB_RS11790 - NnrS family protein, at 2,541,213 to 2,542,424
_RS11790
Position (kb)
2539
2540
2541
2542 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2538.972 kb on - strand, within AMB_RS11780 at 2539.082 kb on + strand at 2539.082 kb on + strand at 2539.082 kb on + strand at 2539.082 kb on + strand at 2539.083 kb on - strand at 2539.083 kb on - strand at 2539.083 kb on - strand at 2539.083 kb on - strand at 2539.083 kb on - strand at 2539.330 kb on + strand at 2539.390 kb on + strand at 2539.436 kb on + strand at 2539.436 kb on + strand at 2539.436 kb on + strand at 2539.436 kb on + strand at 2539.437 kb on - strand at 2539.437 kb on - strand at 2539.437 kb on - strand at 2539.439 kb on - strand at 2539.623 kb on + strand, within AMB_RS11785 at 2539.624 kb on - strand, within AMB_RS11785 at 2539.624 kb on - strand, within AMB_RS11785 at 2539.704 kb on + strand, within AMB_RS11785 at 2539.733 kb on + strand, within AMB_RS11785 at 2539.734 kb on - strand, within AMB_RS11785 at 2539.734 kb on - strand, within AMB_RS11785 at 2539.878 kb on + strand, within AMB_RS11785 at 2539.878 kb on + strand, within AMB_RS11785 at 2539.878 kb on + strand, within AMB_RS11785 at 2539.926 kb on + strand, within AMB_RS11785 at 2539.926 kb on + strand, within AMB_RS11785 at 2539.926 kb on + strand, within AMB_RS11785 at 2539.926 kb on + strand, within AMB_RS11785 at 2539.926 kb on + strand, within AMB_RS11785 at 2539.926 kb on + strand, within AMB_RS11785 at 2539.927 kb on - strand, within AMB_RS11785 at 2539.927 kb on - strand, within AMB_RS11785 at 2539.927 kb on - strand, within AMB_RS11785 at 2539.974 kb on + strand, within AMB_RS11785 at 2539.974 kb on + strand, within AMB_RS11785 at 2539.974 kb on + strand, within AMB_RS11785 at 2539.974 kb on + strand, within AMB_RS11785 at 2539.975 kb on - strand, within AMB_RS11785 at 2539.975 kb on - strand, within AMB_RS11785 at 2539.975 kb on - strand, within AMB_RS11785 at 2539.975 kb on - strand, within AMB_RS11785 at 2539.975 kb on - strand, within AMB_RS11785 at 2539.975 kb on - strand, within AMB_RS11785 at 2540.123 kb on + strand, within AMB_RS11785 at 2540.124 kb on - strand, within AMB_RS11785 at 2540.141 kb on + strand, within AMB_RS11785 at 2540.655 kb on - strand, within AMB_RS11785 at 2541.132 kb on + strand at 2541.132 kb on + strand at 2541.132 kb on + strand at 2541.132 kb on + strand at 2541.132 kb on + strand at 2541.132 kb on + strand at 2541.132 kb on + strand at 2541.132 kb on + strand at 2541.132 kb on + strand at 2541.133 kb on - strand at 2541.133 kb on - strand at 2541.133 kb on - strand at 2541.133 kb on - strand at 2541.133 kb on - strand at 2541.133 kb on - strand at 2541.133 kb on - strand at 2541.133 kb on - strand at 2541.133 kb on - strand at 2541.133 kb on - strand at 2541.176 kb on + strand at 2541.176 kb on + strand at 2541.176 kb on + strand at 2541.176 kb on + strand at 2541.177 kb on - strand at 2541.177 kb on - strand at 2541.177 kb on - strand at 2541.244 kb on - strand at 2541.244 kb on - strand at 2541.244 kb on - strand at 2541.659 kb on + strand, within AMB_RS11790 at 2541.660 kb on - strand, within AMB_RS11790 at 2541.660 kb on - strand, within AMB_RS11790 at 2542.062 kb on + strand, within AMB_RS11790 at 2542.063 kb on - strand, within AMB_RS11790 at 2542.063 kb on - strand, within AMB_RS11790
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_2 remove 2,538,972 - AMB_RS11780 0.90 +0.2 2,539,082 + -0.8 2,539,082 + +0.7 2,539,082 + -0.4 2,539,082 + -2.4 2,539,083 - -1.9 2,539,083 - -0.9 2,539,083 - -0.8 2,539,083 - -0.2 2,539,083 - -0.7 2,539,330 + -0.8 2,539,390 + -0.0 2,539,436 + +0.3 2,539,436 + -0.8 2,539,436 + -1.9 2,539,436 + -2.5 2,539,437 - -0.2 2,539,437 - -1.1 2,539,437 - -0.4 2,539,439 - -1.9 2,539,623 + AMB_RS11785 0.13 -0.9 2,539,624 - AMB_RS11785 0.13 -0.3 2,539,624 - AMB_RS11785 0.13 -0.5 2,539,704 + AMB_RS11785 0.17 -0.0 2,539,733 + AMB_RS11785 0.19 -0.2 2,539,734 - AMB_RS11785 0.19 -0.4 2,539,734 - AMB_RS11785 0.19 -0.2 2,539,878 + AMB_RS11785 0.27 -0.5 2,539,878 + AMB_RS11785 0.27 -0.4 2,539,878 + AMB_RS11785 0.27 -2.5 2,539,926 + AMB_RS11785 0.30 -0.4 2,539,926 + AMB_RS11785 0.30 +0.2 2,539,926 + AMB_RS11785 0.30 -0.8 2,539,926 + AMB_RS11785 0.30 -0.3 2,539,926 + AMB_RS11785 0.30 +0.3 2,539,926 + AMB_RS11785 0.30 -1.0 2,539,927 - AMB_RS11785 0.30 +0.2 2,539,927 - AMB_RS11785 0.30 -0.3 2,539,927 - AMB_RS11785 0.30 +1.3 2,539,974 + AMB_RS11785 0.33 -0.1 2,539,974 + AMB_RS11785 0.33 -0.5 2,539,974 + AMB_RS11785 0.33 -2.2 2,539,974 + AMB_RS11785 0.33 -0.3 2,539,975 - AMB_RS11785 0.33 -0.9 2,539,975 - AMB_RS11785 0.33 +0.5 2,539,975 - AMB_RS11785 0.33 -0.5 2,539,975 - AMB_RS11785 0.33 -0.9 2,539,975 - AMB_RS11785 0.33 +0.1 2,539,975 - AMB_RS11785 0.33 -0.9 2,540,123 + AMB_RS11785 0.42 -0.5 2,540,124 - AMB_RS11785 0.42 +0.3 2,540,141 + AMB_RS11785 0.43 -0.7 2,540,655 - AMB_RS11785 0.72 -0.1 2,541,132 + -2.5 2,541,132 + -0.5 2,541,132 + -1.8 2,541,132 + +0.1 2,541,132 + -1.0 2,541,132 + -0.1 2,541,132 + -1.3 2,541,132 + -0.5 2,541,132 + -0.5 2,541,133 - -1.4 2,541,133 - -0.5 2,541,133 - -1.5 2,541,133 - -0.3 2,541,133 - -1.7 2,541,133 - +0.6 2,541,133 - -0.8 2,541,133 - +0.0 2,541,133 - -2.1 2,541,133 - -1.2 2,541,176 + +1.1 2,541,176 + -0.0 2,541,176 + -1.0 2,541,176 + -0.7 2,541,177 - -0.2 2,541,177 - +0.6 2,541,177 - -1.0 2,541,244 - -0.3 2,541,244 - +0.8 2,541,244 - -1.4 2,541,659 + AMB_RS11790 0.37 -0.4 2,541,660 - AMB_RS11790 0.37 -1.5 2,541,660 - AMB_RS11790 0.37 -1.2 2,542,062 + AMB_RS11790 0.70 +0.1 2,542,063 - AMB_RS11790 0.70 +2.1 2,542,063 - AMB_RS11790 0.70 -1.6
Or see this region's nucleotide sequence