Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08425

Experiment: 150_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS08415 and AMB_RS08420 overlap by 4 nucleotidesAMB_RS08420 and AMB_RS08425 are separated by 59 nucleotidesAMB_RS08425 and AMB_RS08430 are separated by 98 nucleotides AMB_RS08415: AMB_RS08415 - bacterioferritin, at 1,801,120 to 1,801,611 _RS08415 AMB_RS08420: AMB_RS08420 - bacterioferritin, at 1,801,608 to 1,802,090 _RS08420 AMB_RS08425: AMB_RS08425 - MFS transporter, at 1,802,150 to 1,803,409 _RS08425 AMB_RS08430: AMB_RS08430 - glutathione-disulfide reductase, at 1,803,508 to 1,804,875 _RS08430 Position (kb) 1802 1803 1804Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1801.193 kb on - strand, within AMB_RS08415at 1801.193 kb on - strand, within AMB_RS08415at 1801.240 kb on + strand, within AMB_RS08415at 1801.240 kb on + strand, within AMB_RS08415at 1801.241 kb on - strand, within AMB_RS08415at 1801.397 kb on - strand, within AMB_RS08415at 1801.460 kb on - strand, within AMB_RS08415at 1801.567 kb on + strandat 1801.567 kb on + strandat 1801.740 kb on + strand, within AMB_RS08420at 1801.740 kb on + strand, within AMB_RS08420at 1801.740 kb on + strand, within AMB_RS08420at 1801.741 kb on - strand, within AMB_RS08420at 1801.741 kb on - strand, within AMB_RS08420at 1801.741 kb on - strand, within AMB_RS08420at 1801.741 kb on - strand, within AMB_RS08420at 1801.839 kb on + strand, within AMB_RS08420at 1801.839 kb on + strand, within AMB_RS08420at 1801.839 kb on + strand, within AMB_RS08420at 1801.839 kb on + strand, within AMB_RS08420at 1801.839 kb on + strand, within AMB_RS08420at 1801.839 kb on + strand, within AMB_RS08420at 1801.839 kb on + strand, within AMB_RS08420at 1801.839 kb on + strand, within AMB_RS08420at 1801.839 kb on + strand, within AMB_RS08420at 1801.839 kb on + strand, within AMB_RS08420at 1801.840 kb on - strand, within AMB_RS08420at 1801.840 kb on - strand, within AMB_RS08420at 1802.052 kb on + strandat 1802.052 kb on + strandat 1802.052 kb on + strandat 1802.052 kb on + strandat 1802.052 kb on + strandat 1802.052 kb on + strandat 1802.052 kb on + strandat 1802.052 kb on + strandat 1802.053 kb on - strandat 1802.053 kb on - strandat 1802.349 kb on + strand, within AMB_RS08425at 1802.349 kb on + strand, within AMB_RS08425at 1802.350 kb on - strand, within AMB_RS08425at 1802.350 kb on - strand, within AMB_RS08425at 1802.350 kb on - strand, within AMB_RS08425at 1802.350 kb on - strand, within AMB_RS08425at 1802.350 kb on - strand, within AMB_RS08425at 1802.422 kb on - strand, within AMB_RS08425at 1802.460 kb on + strand, within AMB_RS08425at 1802.460 kb on + strand, within AMB_RS08425at 1802.460 kb on + strand, within AMB_RS08425at 1802.460 kb on + strand, within AMB_RS08425at 1802.460 kb on + strand, within AMB_RS08425at 1802.461 kb on - strand, within AMB_RS08425at 1802.461 kb on - strand, within AMB_RS08425at 1802.461 kb on - strand, within AMB_RS08425at 1802.643 kb on + strand, within AMB_RS08425at 1802.643 kb on + strand, within AMB_RS08425at 1802.643 kb on + strand, within AMB_RS08425at 1802.643 kb on + strand, within AMB_RS08425at 1802.643 kb on + strand, within AMB_RS08425at 1802.644 kb on - strand, within AMB_RS08425at 1802.644 kb on - strand, within AMB_RS08425at 1802.644 kb on - strand, within AMB_RS08425at 1802.652 kb on + strand, within AMB_RS08425at 1802.652 kb on + strand, within AMB_RS08425at 1802.652 kb on + strand, within AMB_RS08425at 1802.652 kb on + strand, within AMB_RS08425at 1802.652 kb on + strand, within AMB_RS08425at 1802.653 kb on - strand, within AMB_RS08425at 1802.674 kb on - strand, within AMB_RS08425at 1802.674 kb on - strand, within AMB_RS08425at 1803.063 kb on + strand, within AMB_RS08425at 1803.064 kb on - strand, within AMB_RS08425at 1803.064 kb on - strand, within AMB_RS08425at 1803.064 kb on - strand, within AMB_RS08425at 1803.064 kb on - strand, within AMB_RS08425at 1803.064 kb on - strand, within AMB_RS08425at 1803.064 kb on - strand, within AMB_RS08425at 1803.064 kb on - strand, within AMB_RS08425at 1803.064 kb on - strand, within AMB_RS08425at 1803.204 kb on + strand, within AMB_RS08425at 1803.204 kb on + strand, within AMB_RS08425at 1803.204 kb on + strand, within AMB_RS08425at 1803.205 kb on - strand, within AMB_RS08425at 1803.205 kb on - strand, within AMB_RS08425at 1803.205 kb on - strand, within AMB_RS08425at 1803.361 kb on - strandat 1803.427 kb on - strandat 1803.524 kb on - strandat 1803.673 kb on + strand, within AMB_RS08430at 1803.674 kb on - strand, within AMB_RS08430at 1803.803 kb on - strand, within AMB_RS08430at 1803.870 kb on + strand, within AMB_RS08430at 1803.871 kb on - strand, within AMB_RS08430at 1804.037 kb on - strand, within AMB_RS08430at 1804.229 kb on - strand, within AMB_RS08430at 1804.279 kb on + strand, within AMB_RS08430at 1804.279 kb on + strand, within AMB_RS08430at 1804.279 kb on + strand, within AMB_RS08430at 1804.279 kb on + strand, within AMB_RS08430at 1804.279 kb on + strand, within AMB_RS08430at 1804.279 kb on + strand, within AMB_RS08430at 1804.279 kb on + strand, within AMB_RS08430at 1804.279 kb on + strand, within AMB_RS08430at 1804.280 kb on - strand, within AMB_RS08430at 1804.280 kb on - strand, within AMB_RS08430at 1804.280 kb on - strand, within AMB_RS08430at 1804.280 kb on - strand, within AMB_RS08430at 1804.280 kb on - strand, within AMB_RS08430at 1804.280 kb on - strand, within AMB_RS08430at 1804.280 kb on - strand, within AMB_RS08430at 1804.280 kb on - strand, within AMB_RS08430at 1804.395 kb on + strand, within AMB_RS08430at 1804.396 kb on - strand, within AMB_RS08430at 1804.396 kb on - strand, within AMB_RS08430

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_2
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1,801,193 - AMB_RS08415 0.15 -0.9
1,801,193 - AMB_RS08415 0.15 -1.4
1,801,240 + AMB_RS08415 0.24 -0.8
1,801,240 + AMB_RS08415 0.24 -2.9
1,801,241 - AMB_RS08415 0.25 +0.7
1,801,397 - AMB_RS08415 0.56 -0.7
1,801,460 - AMB_RS08415 0.69 -0.0
1,801,567 + -1.8
1,801,567 + -0.9
1,801,740 + AMB_RS08420 0.27 +0.2
1,801,740 + AMB_RS08420 0.27 +0.2
1,801,740 + AMB_RS08420 0.27 +0.6
1,801,741 - AMB_RS08420 0.28 -0.2
1,801,741 - AMB_RS08420 0.28 -0.4
1,801,741 - AMB_RS08420 0.28 -0.4
1,801,741 - AMB_RS08420 0.28 +0.2
1,801,839 + AMB_RS08420 0.48 -0.4
1,801,839 + AMB_RS08420 0.48 +0.6
1,801,839 + AMB_RS08420 0.48 +0.1
1,801,839 + AMB_RS08420 0.48 -0.0
1,801,839 + AMB_RS08420 0.48 +0.1
1,801,839 + AMB_RS08420 0.48 -0.2
1,801,839 + AMB_RS08420 0.48 -0.3
1,801,839 + AMB_RS08420 0.48 -0.6
1,801,839 + AMB_RS08420 0.48 +1.7
1,801,839 + AMB_RS08420 0.48 -0.6
1,801,840 - AMB_RS08420 0.48 -0.3
1,801,840 - AMB_RS08420 0.48 +0.2
1,802,052 + -0.5
1,802,052 + -0.3
1,802,052 + -0.9
1,802,052 + -1.4
1,802,052 + -0.5
1,802,052 + -0.1
1,802,052 + -0.6
1,802,052 + +0.1
1,802,053 - +0.1
1,802,053 - -0.4
1,802,349 + AMB_RS08425 0.16 +0.5
1,802,349 + AMB_RS08425 0.16 +1.6
1,802,350 - AMB_RS08425 0.16 -0.2
1,802,350 - AMB_RS08425 0.16 -0.6
1,802,350 - AMB_RS08425 0.16 -1.0
1,802,350 - AMB_RS08425 0.16 -0.3
1,802,350 - AMB_RS08425 0.16 +0.5
1,802,422 - AMB_RS08425 0.22 -0.8
1,802,460 + AMB_RS08425 0.25 +0.0
1,802,460 + AMB_RS08425 0.25 +0.0
1,802,460 + AMB_RS08425 0.25 -0.6
1,802,460 + AMB_RS08425 0.25 +0.6
1,802,460 + AMB_RS08425 0.25 -0.7
1,802,461 - AMB_RS08425 0.25 -0.2
1,802,461 - AMB_RS08425 0.25 +0.1
1,802,461 - AMB_RS08425 0.25 +0.7
1,802,643 + AMB_RS08425 0.39 -0.7
1,802,643 + AMB_RS08425 0.39 +0.1
1,802,643 + AMB_RS08425 0.39 -0.1
1,802,643 + AMB_RS08425 0.39 -0.6
1,802,643 + AMB_RS08425 0.39 -0.7
1,802,644 - AMB_RS08425 0.39 -0.1
1,802,644 - AMB_RS08425 0.39 +0.4
1,802,644 - AMB_RS08425 0.39 +0.7
1,802,652 + AMB_RS08425 0.40 -1.5
1,802,652 + AMB_RS08425 0.40 -0.0
1,802,652 + AMB_RS08425 0.40 -0.0
1,802,652 + AMB_RS08425 0.40 -0.1
1,802,652 + AMB_RS08425 0.40 +0.8
1,802,653 - AMB_RS08425 0.40 -2.9
1,802,674 - AMB_RS08425 0.42 -1.7
1,802,674 - AMB_RS08425 0.42 +1.3
1,803,063 + AMB_RS08425 0.72 +1.1
1,803,064 - AMB_RS08425 0.73 -0.5
1,803,064 - AMB_RS08425 0.73 +0.1
1,803,064 - AMB_RS08425 0.73 +0.8
1,803,064 - AMB_RS08425 0.73 -1.7
1,803,064 - AMB_RS08425 0.73 +0.1
1,803,064 - AMB_RS08425 0.73 -0.2
1,803,064 - AMB_RS08425 0.73 +0.2
1,803,064 - AMB_RS08425 0.73 -0.8
1,803,204 + AMB_RS08425 0.84 -0.3
1,803,204 + AMB_RS08425 0.84 -0.4
1,803,204 + AMB_RS08425 0.84 +0.4
1,803,205 - AMB_RS08425 0.84 -0.4
1,803,205 - AMB_RS08425 0.84 +1.0
1,803,205 - AMB_RS08425 0.84 +0.1
1,803,361 - -0.4
1,803,427 - -0.2
1,803,524 - -0.3
1,803,673 + AMB_RS08430 0.12 -1.5
1,803,674 - AMB_RS08430 0.12 +0.4
1,803,803 - AMB_RS08430 0.22 -5.3
1,803,870 + AMB_RS08430 0.26 +0.0
1,803,871 - AMB_RS08430 0.27 +0.2
1,804,037 - AMB_RS08430 0.39 +0.5
1,804,229 - AMB_RS08430 0.53 -0.6
1,804,279 + AMB_RS08430 0.56 +0.1
1,804,279 + AMB_RS08430 0.56 -0.8
1,804,279 + AMB_RS08430 0.56 +1.3
1,804,279 + AMB_RS08430 0.56 -0.3
1,804,279 + AMB_RS08430 0.56 -0.9
1,804,279 + AMB_RS08430 0.56 +0.6
1,804,279 + AMB_RS08430 0.56 -0.3
1,804,279 + AMB_RS08430 0.56 -0.0
1,804,280 - AMB_RS08430 0.56 -0.3
1,804,280 - AMB_RS08430 0.56 +0.1
1,804,280 - AMB_RS08430 0.56 -0.5
1,804,280 - AMB_RS08430 0.56 +1.2
1,804,280 - AMB_RS08430 0.56 -1.0
1,804,280 - AMB_RS08430 0.56 +0.1
1,804,280 - AMB_RS08430 0.56 -3.6
1,804,280 - AMB_RS08430 0.56 -1.0
1,804,395 + AMB_RS08430 0.65 -1.2
1,804,396 - AMB_RS08430 0.65 -0.4
1,804,396 - AMB_RS08430 0.65 -0.6

Or see this region's nucleotide sequence