Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07565

Experiment: 150_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07550 and AMB_RS07555 are separated by 45 nucleotidesAMB_RS07555 and AMB_RS07560 are separated by 6 nucleotidesAMB_RS07560 and AMB_RS07565 are separated by 5 nucleotidesAMB_RS07565 and AMB_RS07570 overlap by 1 nucleotidesAMB_RS07570 and AMB_RS07575 overlap by 4 nucleotidesAMB_RS07575 and AMB_RS23300 overlap by 4 nucleotides AMB_RS07550: AMB_RS07550 - DUF1566 domain-containing protein, at 1,634,687 to 1,635,238 _RS07550 AMB_RS07555: AMB_RS07555 - DUF1566 domain-containing protein, at 1,635,284 to 1,635,856 _RS07555 AMB_RS07560: AMB_RS07560 - hypothetical protein, at 1,635,863 to 1,636,198 _RS07560 AMB_RS07565: AMB_RS07565 - single-stranded DNA-binding protein, at 1,636,204 to 1,636,785 _RS07565 AMB_RS07570: AMB_RS07570 - hypothetical protein, at 1,636,785 to 1,637,390 _RS07570 AMB_RS07575: AMB_RS07575 - hypothetical protein, at 1,637,387 to 1,637,692 _RS07575 AMB_RS23300: AMB_RS23300 - transcriptional regulator, at 1,637,689 to 1,639,923 _RS23300 Position (kb) 1636 1637Strain fitness (log2 ratio) -3 -2 -1 0 1at 1635.345 kb on + strand, within AMB_RS07555at 1635.345 kb on + strand, within AMB_RS07555at 1635.387 kb on + strand, within AMB_RS07555at 1635.839 kb on - strandat 1635.844 kb on + strandat 1635.844 kb on + strandat 1635.844 kb on + strandat 1635.844 kb on + strandat 1635.845 kb on - strandat 1635.845 kb on - strandat 1635.845 kb on - strandat 1635.864 kb on + strandat 1636.370 kb on + strand, within AMB_RS07565at 1636.370 kb on + strand, within AMB_RS07565at 1636.493 kb on + strand, within AMB_RS07565at 1636.493 kb on + strand, within AMB_RS07565at 1636.550 kb on + strand, within AMB_RS07565at 1636.551 kb on - strand, within AMB_RS07565at 1636.786 kb on + strandat 1636.787 kb on - strandat 1637.008 kb on + strand, within AMB_RS07570at 1637.008 kb on + strand, within AMB_RS07570at 1637.008 kb on + strand, within AMB_RS07570at 1637.643 kb on + strand, within AMB_RS07575

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_2
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1,635,345 + AMB_RS07555 0.11 -0.7
1,635,345 + AMB_RS07555 0.11 -0.8
1,635,387 + AMB_RS07555 0.18 +0.1
1,635,839 - -0.3
1,635,844 + +0.7
1,635,844 + -0.3
1,635,844 + -0.4
1,635,844 + -0.4
1,635,845 - -0.5
1,635,845 - -0.2
1,635,845 - -1.5
1,635,864 + -0.0
1,636,370 + AMB_RS07565 0.29 -0.1
1,636,370 + AMB_RS07565 0.29 -0.2
1,636,493 + AMB_RS07565 0.50 -0.4
1,636,493 + AMB_RS07565 0.50 -0.6
1,636,550 + AMB_RS07565 0.59 -0.9
1,636,551 - AMB_RS07565 0.60 -0.6
1,636,786 + -0.2
1,636,787 - -1.5
1,637,008 + AMB_RS07570 0.37 +0.6
1,637,008 + AMB_RS07570 0.37 -3.4
1,637,008 + AMB_RS07570 0.37 +0.3
1,637,643 + AMB_RS07575 0.84 +1.4

Or see this region's nucleotide sequence