Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06885

Experiment: 150_mag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	150_mag_2
1,471,000	+		AMB_RS06875	0.18	-0.2
1,471,000	+		AMB_RS06875	0.18	+0.2
1,471,001	-		AMB_RS06875	0.18	+0.8
1,471,001	-		AMB_RS06875	0.18	-1.5
1,471,001	-		AMB_RS06875	0.18	+1.1
1,471,001	-		AMB_RS06875	0.18	+0.1
1,471,001	-		AMB_RS06875	0.18	-1.4
1,471,001	-		AMB_RS06875	0.18	-0.3
1,471,132	+		AMB_RS06875	0.45	-0.1
1,471,132	+		AMB_RS06875	0.45	-0.9
1,471,132	+		AMB_RS06875	0.45	+0.2
1,471,133	-		AMB_RS06875	0.45	-0.8
1,471,133	-		AMB_RS06875	0.45	-1.1
1,471,358	+				+0.3
1,471,361	-				-0.8
1,471,380	+				-1.2
1,471,412	+				-0.7
1,471,413	-				-0.4
1,471,447	+				-0.8
1,471,447	+				-0.9
1,471,448	-				+0.6
1,471,448	-				+0.5
1,471,449	+				-0.8
1,471,449	+				+1.1
1,471,450	-				-0.4
1,471,621	-				-0.9
1,471,994	+				-1.6
1,471,994	+				-0.7
1,471,995	-				-1.0
1,471,995	-				-1.2
1,471,995	-				-0.6
1,472,072	+				+0.3
1,472,073	-				+0.1
1,472,073	-				-0.9
1,472,192	+				-0.6
1,472,192	+				-0.8
1,472,192	+				-1.0
1,472,267	+				-0.8
1,472,267	+				-0.2
1,472,267	+				-0.9
1,472,267	+				+0.5
1,472,267	+				-0.2
1,472,267	+				-0.7
1,472,267	+				-0.8
1,472,267	+				-0.3
1,472,267	+				-1.2
1,472,267	+				-1.0
1,472,267	+				-2.9
1,472,268	-		AMB_RS06885	0.10	-1.3
1,472,268	-		AMB_RS06885	0.10	-1.0
1,472,268	-		AMB_RS06885	0.10	-1.0
1,472,268	-		AMB_RS06885	0.10	-4.2
1,472,268	-		AMB_RS06885	0.10	+0.6
1,472,268	-		AMB_RS06885	0.10	-1.5
1,472,268	-		AMB_RS06885	0.10	-1.0
1,472,333	+		AMB_RS06885	0.12	+0.1
1,472,333	+		AMB_RS06885	0.12	-1.0
1,472,433	-		AMB_RS06885	0.14	-0.4
1,472,433	-		AMB_RS06885	0.14	+0.6
1,472,640	+		AMB_RS06885	0.19	-1.0
1,472,640	+		AMB_RS06885	0.19	-0.9
1,472,640	+		AMB_RS06885	0.19	-0.5
1,472,641	-		AMB_RS06885	0.19	-0.6
1,472,865	-		AMB_RS06885	0.25	-1.1
1,472,940	+		AMB_RS06885	0.27	-0.1
1,472,940	+		AMB_RS06885	0.27	-0.5
1,472,940	+		AMB_RS06885	0.27	-1.8
1,472,940	+		AMB_RS06885	0.27	-0.0
1,472,941	-		AMB_RS06885	0.27	-0.7
1,472,941	-		AMB_RS06885	0.27	-1.5
1,472,942	+		AMB_RS06885	0.27	-1.0
1,472,942	+		AMB_RS06885	0.27	-0.7
1,472,942	+		AMB_RS06885	0.27	-1.2
1,472,942	+		AMB_RS06885	0.27	-1.4
1,472,942	+		AMB_RS06885	0.27	+0.1
1,472,942	+		AMB_RS06885	0.27	-0.8
1,472,942	+		AMB_RS06885	0.27	-0.5
1,472,942	+		AMB_RS06885	0.27	+0.1
1,472,942	+		AMB_RS06885	0.27	-1.3
1,472,943	-		AMB_RS06885	0.27	-0.8
1,472,943	-		AMB_RS06885	0.27	+0.1
1,472,943	-		AMB_RS06885	0.27	-2.7
1,472,943	-		AMB_RS06885	0.27	-0.9
1,472,954	+		AMB_RS06885	0.27	-0.9
1,472,954	+		AMB_RS06885	0.27	-0.9
1,473,017	+		AMB_RS06885	0.29	-0.1
1,473,017	+		AMB_RS06885	0.29	-0.8
1,473,017	+		AMB_RS06885	0.29	-0.6
1,473,017	+		AMB_RS06885	0.29	-3.5
1,473,017	+		AMB_RS06885	0.29	-0.9
1,473,017	+		AMB_RS06885	0.29	-0.6
1,473,017	+		AMB_RS06885	0.29	+2.4
1,473,017	+		AMB_RS06885	0.29	-1.0
1,473,018	-		AMB_RS06885	0.29	-1.0
1,473,018	-		AMB_RS06885	0.29	-1.3
1,473,018	-		AMB_RS06885	0.29	-1.1
1,473,018	-		AMB_RS06885	0.29	-1.4
1,473,018	-		AMB_RS06885	0.29	-0.9
1,473,018	-		AMB_RS06885	0.29	-2.0
1,473,018	-		AMB_RS06885	0.29	-1.0
1,473,029	+		AMB_RS06885	0.29	-0.9
1,473,029	+		AMB_RS06885	0.29	+1.1
1,473,030	-		AMB_RS06885	0.29	-1.2
1,473,030	-		AMB_RS06885	0.29	-0.8
1,473,030	-		AMB_RS06885	0.29	-2.6
1,473,030	-		AMB_RS06885	0.29	-1.7
1,473,030	-		AMB_RS06885	0.29	-1.2
1,473,038	+		AMB_RS06885	0.29	-1.5
1,473,038	+		AMB_RS06885	0.29	-0.8
1,473,038	+		AMB_RS06885	0.29	-2.1
1,473,038	+		AMB_RS06885	0.29	-1.0
1,473,038	+		AMB_RS06885	0.29	+0.5
1,473,038	+		AMB_RS06885	0.29	-1.1
1,473,038	+		AMB_RS06885	0.29	-0.7
1,473,039	-		AMB_RS06885	0.29	-0.7
1,473,039	-		AMB_RS06885	0.29	-1.9
1,473,039	-		AMB_RS06885	0.29	-3.5
1,473,039	-		AMB_RS06885	0.29	+1.1
1,473,155	+		AMB_RS06885	0.32	+0.5
1,473,174	-		AMB_RS06885	0.33	-1.8
1,473,174	-		AMB_RS06885	0.33	-0.8
1,473,241	+		AMB_RS06885	0.34	-0.8
1,473,241	+		AMB_RS06885	0.34	-1.2
1,473,242	-		AMB_RS06885	0.34	-1.1
1,473,258	-		AMB_RS06885	0.35	-0.3
1,473,470	+		AMB_RS06885	0.40	-0.8
1,473,470	+		AMB_RS06885	0.40	-1.0
1,473,470	+		AMB_RS06885	0.40	-0.9
1,473,470	+		AMB_RS06885	0.40	-2.3
1,473,471	-		AMB_RS06885	0.40	-0.5
1,473,653	+		AMB_RS06885	0.45	-0.6
1,473,653	+		AMB_RS06885	0.45	-2.2
1,473,653	+		AMB_RS06885	0.45	-0.9
1,473,653	+		AMB_RS06885	0.45	-1.8
1,473,653	+		AMB_RS06885	0.45	+0.5
1,473,653	+		AMB_RS06885	0.45	+0.3
1,473,654	-		AMB_RS06885	0.45	-0.5
1,473,654	-		AMB_RS06885	0.45	-0.8
1,473,654	-		AMB_RS06885	0.45	-1.3
1,473,654	-		AMB_RS06885	0.45	+0.6
1,473,654	-		AMB_RS06885	0.45	-0.5
1,473,654	-		AMB_RS06885	0.45	-0.9
1,473,654	-		AMB_RS06885	0.45	+0.1
1,473,690	+		AMB_RS06885	0.46	-2.0
1,473,734	+		AMB_RS06885	0.47	-1.9
1,473,734	+		AMB_RS06885	0.47	-1.9
1,473,734	+		AMB_RS06885	0.47	-1.2
1,473,734	+		AMB_RS06885	0.47	-1.0
1,473,734	+		AMB_RS06885	0.47	-3.5
1,473,735	-		AMB_RS06885	0.47	-1.6
1,473,735	-		AMB_RS06885	0.47	+0.5
1,473,735	-		AMB_RS06885	0.47	-1.3
1,473,735	-		AMB_RS06885	0.47	+0.2
1,473,737	+		AMB_RS06885	0.47	-1.2
1,473,737	+		AMB_RS06885	0.47	-0.7
1,473,738	-		AMB_RS06885	0.47	-0.6
1,473,836	+		AMB_RS06885	0.49	-0.7
1,473,836	+		AMB_RS06885	0.49	-1.0
1,473,837	-		AMB_RS06885	0.49	-2.1
1,473,837	-		AMB_RS06885	0.49	-1.3
1,473,837	-		AMB_RS06885	0.49	-2.1
1,473,837	-		AMB_RS06885	0.49	+0.4
1,473,899	+		AMB_RS06885	0.51	+0.4
1,473,899	+		AMB_RS06885	0.51	-3.3
1,473,899	+		AMB_RS06885	0.51	-0.5
1,473,899	+		AMB_RS06885	0.51	-0.9
1,473,899	+		AMB_RS06885	0.51	-1.6
1,473,899	+		AMB_RS06885	0.51	-0.9
1,473,899	+		AMB_RS06885	0.51	-1.3
1,473,899	+		AMB_RS06885	0.51	-1.7
1,473,900	-		AMB_RS06885	0.51	-1.2
1,473,900	-		AMB_RS06885	0.51	-0.6
1,473,900	-		AMB_RS06885	0.51	-1.2
1,473,900	-		AMB_RS06885	0.51	-0.8
1,473,900	-		AMB_RS06885	0.51	-1.4
1,474,094	+		AMB_RS06885	0.56	-1.9
1,474,094	+		AMB_RS06885	0.56	+0.7
1,474,094	+		AMB_RS06885	0.56	-0.6
1,474,094	+		AMB_RS06885	0.56	-0.9
1,474,094	+		AMB_RS06885	0.56	-0.1
1,474,095	-		AMB_RS06885	0.56	-0.8
1,474,095	-		AMB_RS06885	0.56	-0.5
1,474,095	-		AMB_RS06885	0.56	-1.5
1,474,095	-		AMB_RS06885	0.56	-0.7
1,474,382	+		AMB_RS06885	0.63	-1.0
1,474,382	+		AMB_RS06885	0.63	-0.6
1,474,382	+		AMB_RS06885	0.63	+0.2
1,474,382	+		AMB_RS06885	0.63	-0.5
1,474,383	-		AMB_RS06885	0.63	-1.5
1,474,398	+		AMB_RS06885	0.64	-1.3
1,474,398	+		AMB_RS06885	0.64	-0.8
1,474,398	+		AMB_RS06885	0.64	-0.8
1,474,398	+		AMB_RS06885	0.64	-0.4
1,474,398	+		AMB_RS06885	0.64	-2.2
1,474,398	+		AMB_RS06885	0.64	-0.2
1,474,399	-		AMB_RS06885	0.64	-0.7
1,474,399	-		AMB_RS06885	0.64	-1.4
1,474,399	-		AMB_RS06885	0.64	+0.3
1,474,399	-		AMB_RS06885	0.64	-0.5
1,474,399	-		AMB_RS06885	0.64	-0.7
1,474,399	-		AMB_RS06885	0.64	-1.5
1,474,399	-		AMB_RS06885	0.64	-0.6
1,474,399	-		AMB_RS06885	0.64	-1.1
1,474,399	-		AMB_RS06885	0.64	-1.1
1,474,399	-		AMB_RS06885	0.64	-1.9
1,474,400	+		AMB_RS06885	0.64	-0.6
1,474,400	+		AMB_RS06885	0.64	-1.3
1,474,400	+		AMB_RS06885	0.64	-1.7
1,474,400	+		AMB_RS06885	0.64	-1.3
1,474,400	+		AMB_RS06885	0.64	-0.7
1,474,401	-		AMB_RS06885	0.64	-0.8
1,474,401	-		AMB_RS06885	0.64	-1.5
1,474,401	-		AMB_RS06885	0.64	-1.3
1,474,671	-		AMB_RS06885	0.70	+1.3
1,474,671	-		AMB_RS06885	0.70	-1.0
1,474,841	+		AMB_RS06885	0.75	-0.8
1,474,841	+		AMB_RS06885	0.75	-0.1
1,474,841	+		AMB_RS06885	0.75	-1.0
1,474,841	+		AMB_RS06885	0.75	-0.6
1,474,841	+		AMB_RS06885	0.75	-1.4
1,474,841	+		AMB_RS06885	0.75	-2.4
1,474,841	+		AMB_RS06885	0.75	-0.1
1,474,841	+		AMB_RS06885	0.75	-0.6
1,474,841	+		AMB_RS06885	0.75	-1.0
1,474,841	+		AMB_RS06885	0.75	-0.7
1,474,841	+		AMB_RS06885	0.75	+0.1
1,474,841	+		AMB_RS06885	0.75	-0.3
1,474,841	+		AMB_RS06885	0.75	-0.5
1,474,841	+		AMB_RS06885	0.75	-2.0
1,474,841	+		AMB_RS06885	0.75	-0.6
1,474,841	+		AMB_RS06885	0.75	-1.5
1,474,842	-		AMB_RS06885	0.75	-0.7
1,474,842	-		AMB_RS06885	0.75	-0.6
1,474,842	-		AMB_RS06885	0.75	-1.8
1,474,842	-		AMB_RS06885	0.75	-1.6
1,474,842	-		AMB_RS06885	0.75	-0.4
1,474,842	-		AMB_RS06885	0.75	-1.0
1,474,842	-		AMB_RS06885	0.75	-0.8
1,474,842	-		AMB_RS06885	0.75	-1.6
1,474,842	-		AMB_RS06885	0.75	-0.6
1,474,842	-		AMB_RS06885	0.75	-0.3
1,474,842	-		AMB_RS06885	0.75	-0.8
1,474,842	-		AMB_RS06885	0.75	-1.2
1,474,842	-		AMB_RS06885	0.75	-0.8
1,474,842	-		AMB_RS06885	0.75	-0.8
1,474,842	-		AMB_RS06885	0.75	-0.8
1,474,842	-		AMB_RS06885	0.75	-0.8
1,474,842	-		AMB_RS06885	0.75	-0.3
1,474,842	-		AMB_RS06885	0.75	+0.2
1,474,842	-		AMB_RS06885	0.75	-0.8
1,474,929	-		AMB_RS06885	0.77	+2.4
1,475,161	+		AMB_RS06885	0.83	-0.6
1,475,162	-		AMB_RS06885	0.83	-1.4
1,475,162	-		AMB_RS06885	0.83	-0.2
1,475,266	+		AMB_RS06885	0.85	-1.1
1,475,266	+		AMB_RS06885	0.85	-0.8
1,475,329	+		AMB_RS06885	0.87	-0.3
1,475,329	+		AMB_RS06885	0.87	-0.1
1,475,329	+		AMB_RS06885	0.87	-1.6
1,475,329	+		AMB_RS06885	0.87	-1.2
1,475,329	+		AMB_RS06885	0.87	-0.9
1,475,329	+		AMB_RS06885	0.87	+0.1
1,475,329	+		AMB_RS06885	0.87	-1.0
1,475,329	+		AMB_RS06885	0.87	-0.2
1,475,330	-		AMB_RS06885	0.87	-0.8
1,475,330	-		AMB_RS06885	0.87	-0.6
1,475,330	-		AMB_RS06885	0.87	-3.6
1,475,330	-		AMB_RS06885	0.87	-0.5
1,475,330	-		AMB_RS06885	0.87	-0.8
1,475,330	-		AMB_RS06885	0.87	-0.5
1,475,330	-		AMB_RS06885	0.87	-1.4
1,475,339	-		AMB_RS06885	0.87	-0.7
1,475,339	-		AMB_RS06885	0.87	+0.4
1,475,339	-		AMB_RS06885	0.87	-3.6
1,475,339	-		AMB_RS06885	0.87	-1.3
1,475,429	+		AMB_RS06885	0.89	-0.5
1,475,554	+				-0.7
1,475,554	+				-0.1
1,475,554	+				-2.5
1,475,554	+				-1.5
1,475,554	+				-1.0
1,475,554	+				-0.8
1,475,554	+				-0.5
1,475,554	+				-0.3
1,475,554	+				-1.0
1,475,554	+				+0.9
1,475,554	+				+0.2
1,475,554	+				-1.3
1,475,554	+				-0.5
1,475,554	+				-2.1
1,475,555	-				-0.9
1,475,555	-				+0.6
1,475,555	-				-0.4
1,475,555	-				-0.8
1,475,555	-				-1.2
1,475,555	-				-0.1
1,475,555	-				+0.1
1,475,555	-				-1.2
1,475,555	-				-1.5
1,475,701	+				+1.4
1,475,701	+				-1.0
1,475,702	-				-0.6
1,475,702	-				-1.1
1,475,702	-				+0.0
1,475,702	-				+0.2
1,475,914	+		AMB_RS06890	0.12	-1.4
1,475,914	+		AMB_RS06890	0.12	-1.5
1,475,915	-		AMB_RS06890	0.12	-1.1
1,475,915	-		AMB_RS06890	0.12	-1.1
1,475,915	-		AMB_RS06890	0.12	-0.1
1,475,915	-		AMB_RS06890	0.12	-1.1
1,475,916	+		AMB_RS06890	0.12	-0.3
1,475,916	+		AMB_RS06890	0.12	-1.6
1,475,916	+		AMB_RS06890	0.12	-0.3
1,475,917	-		AMB_RS06890	0.12	-1.0
1,475,917	-		AMB_RS06890	0.12	-0.3
1,476,414	+				-0.9
1,476,415	-				-0.9
1,476,415	-				-0.8
1,476,415	-				-0.6
1,476,415	-				-1.0
1,476,415	-				-0.9
1,476,441	-				+0.1
1,476,449	+				-1.1
1,476,605	+				+2.3
1,476,606	-				+0.2
1,476,789	-		AMB_RS06895	0.23	-0.2