Experiment: 150_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04380 and AMB_RS04385 are separated by 153 nucleotides AMB_RS04385 and AMB_RS04390 are separated by 31 nucleotides AMB_RS04390 and AMB_RS04395 are separated by 200 nucleotides
AMB_RS04380: AMB_RS04380 - EamA/RhaT family transporter, at 918,907 to 919,812
_RS04380
AMB_RS04385: AMB_RS04385 - elongation factor 3, at 919,966 to 921,780
_RS04385
AMB_RS04390: AMB_RS04390 - hypothetical protein, at 921,812 to 922,288
_RS04390
AMB_RS04395: AMB_RS04395 - hypothetical protein, at 922,489 to 922,833
_RS04395
Position (kb) 919
920
921
922 Strain fitness (log2 ratio) -2
-1
0
1
2 at 919.122 kb on - strand, within AMB_RS04380 at 919.131 kb on + strand, within AMB_RS04380 at 919.131 kb on + strand, within AMB_RS04380 at 919.132 kb on - strand, within AMB_RS04380 at 919.132 kb on - strand, within AMB_RS04380 at 919.132 kb on - strand, within AMB_RS04380 at 919.132 kb on - strand, within AMB_RS04380 at 919.132 kb on - strand, within AMB_RS04380 at 919.132 kb on - strand, within AMB_RS04380 at 919.134 kb on - strand, within AMB_RS04380 at 919.134 kb on - strand, within AMB_RS04380 at 919.163 kb on + strand, within AMB_RS04380 at 919.883 kb on - strand at 920.014 kb on + strand at 920.014 kb on + strand at 920.014 kb on + strand at 920.015 kb on - strand at 920.015 kb on - strand at 920.015 kb on - strand at 920.015 kb on - strand at 920.093 kb on + strand at 920.093 kb on + strand at 920.093 kb on + strand at 920.093 kb on + strand at 920.094 kb on - strand at 920.094 kb on - strand at 920.149 kb on - strand, within AMB_RS04385 at 920.192 kb on + strand, within AMB_RS04385 at 920.192 kb on + strand, within AMB_RS04385 at 920.193 kb on - strand, within AMB_RS04385 at 920.223 kb on + strand, within AMB_RS04385 at 920.223 kb on + strand, within AMB_RS04385 at 920.223 kb on + strand, within AMB_RS04385 at 920.224 kb on - strand, within AMB_RS04385 at 920.294 kb on + strand, within AMB_RS04385 at 920.295 kb on - strand, within AMB_RS04385 at 920.315 kb on + strand, within AMB_RS04385 at 920.315 kb on + strand, within AMB_RS04385 at 920.315 kb on + strand, within AMB_RS04385 at 920.315 kb on + strand, within AMB_RS04385 at 920.315 kb on + strand, within AMB_RS04385 at 920.316 kb on - strand, within AMB_RS04385 at 920.316 kb on - strand, within AMB_RS04385 at 920.316 kb on - strand, within AMB_RS04385 at 920.603 kb on + strand, within AMB_RS04385 at 920.603 kb on + strand, within AMB_RS04385 at 920.604 kb on - strand, within AMB_RS04385 at 920.604 kb on - strand, within AMB_RS04385 at 920.717 kb on + strand, within AMB_RS04385 at 920.741 kb on - strand, within AMB_RS04385 at 921.281 kb on + strand, within AMB_RS04385 at 921.281 kb on + strand, within AMB_RS04385 at 921.460 kb on + strand, within AMB_RS04385 at 921.476 kb on + strand, within AMB_RS04385 at 921.476 kb on + strand, within AMB_RS04385 at 921.476 kb on + strand, within AMB_RS04385 at 921.476 kb on + strand, within AMB_RS04385 at 921.477 kb on - strand, within AMB_RS04385 at 921.477 kb on - strand, within AMB_RS04385 at 921.477 kb on - strand, within AMB_RS04385 at 921.518 kb on + strand, within AMB_RS04385 at 921.518 kb on + strand, within AMB_RS04385 at 921.518 kb on + strand, within AMB_RS04385 at 921.518 kb on + strand, within AMB_RS04385 at 921.519 kb on - strand, within AMB_RS04385 at 921.519 kb on - strand, within AMB_RS04385 at 921.519 kb on - strand, within AMB_RS04385 at 921.519 kb on - strand, within AMB_RS04385 at 921.792 kb on - strand at 921.792 kb on - strand at 921.792 kb on - strand at 921.879 kb on + strand, within AMB_RS04390 at 921.880 kb on - strand, within AMB_RS04390 at 921.880 kb on - strand, within AMB_RS04390 at 921.948 kb on + strand, within AMB_RS04390 at 921.948 kb on + strand, within AMB_RS04390 at 922.107 kb on + strand, within AMB_RS04390 at 922.107 kb on + strand, within AMB_RS04390 at 922.107 kb on + strand, within AMB_RS04390 at 922.108 kb on - strand, within AMB_RS04390 at 922.108 kb on - strand, within AMB_RS04390 at 922.108 kb on - strand, within AMB_RS04390 at 922.238 kb on + strand, within AMB_RS04390 at 922.401 kb on + strand at 922.402 kb on - strand at 922.495 kb on + strand at 922.495 kb on + strand at 922.496 kb on - strand at 922.496 kb on - strand at 922.496 kb on - strand at 922.496 kb on - strand at 922.496 kb on - strand at 922.777 kb on + strand, within AMB_RS04395 at 922.777 kb on + strand, within AMB_RS04395 at 922.777 kb on + strand, within AMB_RS04395 at 922.778 kb on - strand, within AMB_RS04395 at 922.778 kb on - strand, within AMB_RS04395 at 922.778 kb on - strand, within AMB_RS04395 at 922.778 kb on - strand, within AMB_RS04395
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_2 remove 919,122 - AMB_RS04380 0.24 +0.4 919,131 + AMB_RS04380 0.25 -1.5 919,131 + AMB_RS04380 0.25 -0.0 919,132 - AMB_RS04380 0.25 -0.5 919,132 - AMB_RS04380 0.25 +2.2 919,132 - AMB_RS04380 0.25 +0.7 919,132 - AMB_RS04380 0.25 -0.3 919,132 - AMB_RS04380 0.25 -0.2 919,132 - AMB_RS04380 0.25 -1.1 919,134 - AMB_RS04380 0.25 -0.5 919,134 - AMB_RS04380 0.25 -0.0 919,163 + AMB_RS04380 0.28 -0.4 919,883 - -0.9 920,014 + -0.4 920,014 + -1.3 920,014 + -0.2 920,015 - -0.1 920,015 - +0.3 920,015 - +0.2 920,015 - +0.1 920,093 + -0.2 920,093 + +0.6 920,093 + +0.8 920,093 + +0.6 920,094 - -0.1 920,094 - -0.8 920,149 - AMB_RS04385 0.10 +0.7 920,192 + AMB_RS04385 0.12 -0.6 920,192 + AMB_RS04385 0.12 -0.5 920,193 - AMB_RS04385 0.13 -0.1 920,223 + AMB_RS04385 0.14 -0.5 920,223 + AMB_RS04385 0.14 +0.1 920,223 + AMB_RS04385 0.14 -0.2 920,224 - AMB_RS04385 0.14 +0.2 920,294 + AMB_RS04385 0.18 +0.1 920,295 - AMB_RS04385 0.18 -0.3 920,315 + AMB_RS04385 0.19 +0.1 920,315 + AMB_RS04385 0.19 -0.4 920,315 + AMB_RS04385 0.19 +0.8 920,315 + AMB_RS04385 0.19 -0.1 920,315 + AMB_RS04385 0.19 -1.0 920,316 - AMB_RS04385 0.19 -0.3 920,316 - AMB_RS04385 0.19 -0.4 920,316 - AMB_RS04385 0.19 -0.5 920,603 + AMB_RS04385 0.35 -0.4 920,603 + AMB_RS04385 0.35 -0.4 920,604 - AMB_RS04385 0.35 -0.1 920,604 - AMB_RS04385 0.35 +2.7 920,717 + AMB_RS04385 0.41 +0.4 920,741 - AMB_RS04385 0.43 +0.7 921,281 + AMB_RS04385 0.72 +0.7 921,281 + AMB_RS04385 0.72 -1.9 921,460 + AMB_RS04385 0.82 -1.1 921,476 + AMB_RS04385 0.83 +0.1 921,476 + AMB_RS04385 0.83 -0.8 921,476 + AMB_RS04385 0.83 +1.1 921,476 + AMB_RS04385 0.83 -1.7 921,477 - AMB_RS04385 0.83 +0.7 921,477 - AMB_RS04385 0.83 -0.4 921,477 - AMB_RS04385 0.83 -0.4 921,518 + AMB_RS04385 0.86 +0.5 921,518 + AMB_RS04385 0.86 +0.2 921,518 + AMB_RS04385 0.86 +0.6 921,518 + AMB_RS04385 0.86 +0.2 921,519 - AMB_RS04385 0.86 -0.9 921,519 - AMB_RS04385 0.86 -0.4 921,519 - AMB_RS04385 0.86 -0.0 921,519 - AMB_RS04385 0.86 -0.3 921,792 - -0.3 921,792 - -0.1 921,792 - +0.5 921,879 + AMB_RS04390 0.14 -0.2 921,880 - AMB_RS04390 0.14 +0.7 921,880 - AMB_RS04390 0.14 -1.4 921,948 + AMB_RS04390 0.29 -1.6 921,948 + AMB_RS04390 0.29 +0.3 922,107 + AMB_RS04390 0.62 +0.2 922,107 + AMB_RS04390 0.62 -0.2 922,107 + AMB_RS04390 0.62 -0.0 922,108 - AMB_RS04390 0.62 -0.7 922,108 - AMB_RS04390 0.62 -1.1 922,108 - AMB_RS04390 0.62 -0.7 922,238 + AMB_RS04390 0.89 -0.3 922,401 + -0.1 922,402 - +0.1 922,495 + -0.4 922,495 + -0.3 922,496 - -0.3 922,496 - -1.5 922,496 - -1.5 922,496 - -0.2 922,496 - +0.3 922,777 + AMB_RS04395 0.83 +0.5 922,777 + AMB_RS04395 0.83 -0.3 922,777 + AMB_RS04395 0.83 -1.9 922,778 - AMB_RS04395 0.84 -0.4 922,778 - AMB_RS04395 0.84 -1.1 922,778 - AMB_RS04395 0.84 +0.4 922,778 - AMB_RS04395 0.84 -0.7
Or see this region's nucleotide sequence