Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04205

Experiment: 150_mag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS04195 and AMB_RS04200 are separated by 21 nucleotidesAMB_RS04200 and AMB_RS04205 are separated by 55 nucleotidesAMB_RS04205 and AMB_RS04210 are separated by 68 nucleotidesAMB_RS04210 and AMB_RS04215 overlap by 4 nucleotides AMB_RS04195: AMB_RS04195 - transglutaminase family protein, at 882,996 to 883,871 _RS04195 AMB_RS04200: AMB_RS04200 - hypothetical protein, at 883,893 to 884,099 _RS04200 AMB_RS04205: AMB_RS04205 - PAS domain-containing sensor histidine kinase, at 884,155 to 886,542 _RS04205 AMB_RS04210: AMB_RS04210 - bacterioferritin, at 886,611 to 887,093 _RS04210 AMB_RS04215: AMB_RS04215 - bacterioferritin, at 887,090 to 887,581 _RS04215 Position (kb) 884 885 886 887Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 883.608 kb on + strand, within AMB_RS04195at 883.870 kb on - strandat 883.870 kb on - strandat 883.900 kb on + strandat 884.030 kb on + strand, within AMB_RS04200at 884.032 kb on + strand, within AMB_RS04200at 884.032 kb on + strand, within AMB_RS04200at 884.032 kb on + strand, within AMB_RS04200at 884.032 kb on + strand, within AMB_RS04200at 884.032 kb on + strand, within AMB_RS04200at 884.032 kb on + strand, within AMB_RS04200at 884.032 kb on + strand, within AMB_RS04200at 884.033 kb on - strand, within AMB_RS04200at 884.033 kb on - strand, within AMB_RS04200at 884.349 kb on + strandat 884.349 kb on + strandat 884.350 kb on - strandat 884.350 kb on - strandat 884.465 kb on + strand, within AMB_RS04205at 884.466 kb on - strand, within AMB_RS04205at 884.466 kb on - strand, within AMB_RS04205at 884.466 kb on - strand, within AMB_RS04205at 884.720 kb on + strand, within AMB_RS04205at 884.720 kb on + strand, within AMB_RS04205at 884.721 kb on - strand, within AMB_RS04205at 884.786 kb on + strand, within AMB_RS04205at 884.786 kb on + strand, within AMB_RS04205at 884.786 kb on + strand, within AMB_RS04205at 884.786 kb on + strand, within AMB_RS04205at 884.787 kb on - strand, within AMB_RS04205at 884.787 kb on - strand, within AMB_RS04205at 884.787 kb on - strand, within AMB_RS04205at 884.834 kb on + strand, within AMB_RS04205at 884.834 kb on + strand, within AMB_RS04205at 884.834 kb on + strand, within AMB_RS04205at 884.835 kb on - strand, within AMB_RS04205at 884.945 kb on + strand, within AMB_RS04205at 884.945 kb on + strand, within AMB_RS04205at 884.945 kb on + strand, within AMB_RS04205at 884.979 kb on - strand, within AMB_RS04205at 884.979 kb on - strand, within AMB_RS04205at 885.143 kb on + strand, within AMB_RS04205at 885.143 kb on + strand, within AMB_RS04205at 885.143 kb on + strand, within AMB_RS04205at 885.143 kb on + strand, within AMB_RS04205at 885.143 kb on + strand, within AMB_RS04205at 885.143 kb on + strand, within AMB_RS04205at 885.143 kb on + strand, within AMB_RS04205at 885.143 kb on + strand, within AMB_RS04205at 885.144 kb on - strand, within AMB_RS04205at 885.144 kb on - strand, within AMB_RS04205at 885.144 kb on - strand, within AMB_RS04205at 885.239 kb on + strand, within AMB_RS04205at 885.239 kb on + strand, within AMB_RS04205at 885.239 kb on + strand, within AMB_RS04205at 885.240 kb on - strand, within AMB_RS04205at 885.240 kb on - strand, within AMB_RS04205at 885.240 kb on - strand, within AMB_RS04205at 885.325 kb on - strand, within AMB_RS04205at 885.338 kb on + strand, within AMB_RS04205at 885.348 kb on + strand, within AMB_RS04205at 885.348 kb on + strand, within AMB_RS04205at 885.423 kb on + strand, within AMB_RS04205at 885.423 kb on + strand, within AMB_RS04205at 885.423 kb on + strand, within AMB_RS04205at 885.423 kb on + strand, within AMB_RS04205at 885.423 kb on + strand, within AMB_RS04205at 885.424 kb on - strand, within AMB_RS04205at 885.424 kb on - strand, within AMB_RS04205at 885.525 kb on - strand, within AMB_RS04205at 885.573 kb on + strand, within AMB_RS04205at 885.573 kb on + strand, within AMB_RS04205at 885.574 kb on - strand, within AMB_RS04205at 885.575 kb on + strand, within AMB_RS04205at 885.575 kb on + strand, within AMB_RS04205at 885.575 kb on + strand, within AMB_RS04205at 885.575 kb on + strand, within AMB_RS04205at 885.575 kb on + strand, within AMB_RS04205at 885.575 kb on + strand, within AMB_RS04205at 885.575 kb on + strand, within AMB_RS04205at 885.575 kb on + strand, within AMB_RS04205at 885.824 kb on + strand, within AMB_RS04205at 885.824 kb on + strand, within AMB_RS04205at 885.825 kb on - strand, within AMB_RS04205at 885.825 kb on - strand, within AMB_RS04205at 885.897 kb on - strand, within AMB_RS04205at 886.206 kb on - strand, within AMB_RS04205at 886.345 kb on - strandat 886.345 kb on - strandat 886.345 kb on - strandat 886.599 kb on - strandat 886.599 kb on - strandat 886.599 kb on - strandat 886.613 kb on - strandat 886.613 kb on - strandat 886.623 kb on + strandat 886.623 kb on + strandat 886.623 kb on + strandat 886.624 kb on - strandat 886.648 kb on + strandat 886.648 kb on + strandat 886.649 kb on - strandat 886.649 kb on - strandat 886.649 kb on - strandat 886.954 kb on + strand, within AMB_RS04210at 886.954 kb on + strand, within AMB_RS04210at 886.954 kb on + strand, within AMB_RS04210at 886.955 kb on - strand, within AMB_RS04210at 886.955 kb on - strand, within AMB_RS04210at 886.955 kb on - strand, within AMB_RS04210at 886.960 kb on + strand, within AMB_RS04210at 886.960 kb on + strand, within AMB_RS04210at 886.961 kb on - strand, within AMB_RS04210at 886.961 kb on - strand, within AMB_RS04210at 886.961 kb on - strand, within AMB_RS04210at 887.020 kb on + strand, within AMB_RS04210at 887.020 kb on + strand, within AMB_RS04210at 887.020 kb on + strand, within AMB_RS04210at 887.021 kb on - strand, within AMB_RS04210at 887.021 kb on - strand, within AMB_RS04210at 887.021 kb on - strand, within AMB_RS04210at 887.133 kb on + strandat 887.133 kb on + strandat 887.241 kb on + strand, within AMB_RS04215at 887.461 kb on - strand, within AMB_RS04215at 887.487 kb on + strand, within AMB_RS04215at 887.488 kb on - strand, within AMB_RS04215at 887.488 kb on - strand, within AMB_RS04215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_2
remove
883,608 + AMB_RS04195 0.70 -1.5
883,870 - -0.2
883,870 - -0.4
883,900 + +1.4
884,030 + AMB_RS04200 0.66 -0.9
884,032 + AMB_RS04200 0.67 -0.1
884,032 + AMB_RS04200 0.67 -0.1
884,032 + AMB_RS04200 0.67 -0.6
884,032 + AMB_RS04200 0.67 +0.0
884,032 + AMB_RS04200 0.67 -0.4
884,032 + AMB_RS04200 0.67 -0.7
884,032 + AMB_RS04200 0.67 -0.1
884,033 - AMB_RS04200 0.68 -0.4
884,033 - AMB_RS04200 0.68 +1.3
884,349 + -0.1
884,349 + -0.3
884,350 - -0.5
884,350 - +0.6
884,465 + AMB_RS04205 0.13 -0.1
884,466 - AMB_RS04205 0.13 -0.1
884,466 - AMB_RS04205 0.13 -0.3
884,466 - AMB_RS04205 0.13 -0.6
884,720 + AMB_RS04205 0.24 -0.1
884,720 + AMB_RS04205 0.24 -1.5
884,721 - AMB_RS04205 0.24 -1.1
884,786 + AMB_RS04205 0.26 -2.9
884,786 + AMB_RS04205 0.26 +0.7
884,786 + AMB_RS04205 0.26 -1.3
884,786 + AMB_RS04205 0.26 -0.0
884,787 - AMB_RS04205 0.26 -0.2
884,787 - AMB_RS04205 0.26 +0.0
884,787 - AMB_RS04205 0.26 -0.9
884,834 + AMB_RS04205 0.28 -0.7
884,834 + AMB_RS04205 0.28 -0.9
884,834 + AMB_RS04205 0.28 +0.1
884,835 - AMB_RS04205 0.28 -0.5
884,945 + AMB_RS04205 0.33 -1.4
884,945 + AMB_RS04205 0.33 -0.5
884,945 + AMB_RS04205 0.33 -0.0
884,979 - AMB_RS04205 0.35 -0.1
884,979 - AMB_RS04205 0.35 -0.5
885,143 + AMB_RS04205 0.41 +0.8
885,143 + AMB_RS04205 0.41 +0.1
885,143 + AMB_RS04205 0.41 -0.3
885,143 + AMB_RS04205 0.41 -0.2
885,143 + AMB_RS04205 0.41 +0.7
885,143 + AMB_RS04205 0.41 +1.3
885,143 + AMB_RS04205 0.41 +0.4
885,143 + AMB_RS04205 0.41 +0.2
885,144 - AMB_RS04205 0.41 -1.0
885,144 - AMB_RS04205 0.41 +0.5
885,144 - AMB_RS04205 0.41 -0.3
885,239 + AMB_RS04205 0.45 -0.9
885,239 + AMB_RS04205 0.45 -0.2
885,239 + AMB_RS04205 0.45 +0.0
885,240 - AMB_RS04205 0.45 +1.0
885,240 - AMB_RS04205 0.45 +3.5
885,240 - AMB_RS04205 0.45 -0.5
885,325 - AMB_RS04205 0.49 -0.2
885,338 + AMB_RS04205 0.50 -0.2
885,348 + AMB_RS04205 0.50 -0.4
885,348 + AMB_RS04205 0.50 -0.0
885,423 + AMB_RS04205 0.53 -0.2
885,423 + AMB_RS04205 0.53 +1.0
885,423 + AMB_RS04205 0.53 -0.7
885,423 + AMB_RS04205 0.53 -0.7
885,423 + AMB_RS04205 0.53 +0.2
885,424 - AMB_RS04205 0.53 -0.6
885,424 - AMB_RS04205 0.53 -1.9
885,525 - AMB_RS04205 0.57 -0.8
885,573 + AMB_RS04205 0.59 -1.0
885,573 + AMB_RS04205 0.59 +0.2
885,574 - AMB_RS04205 0.59 -0.2
885,575 + AMB_RS04205 0.59 -0.6
885,575 + AMB_RS04205 0.59 -0.7
885,575 + AMB_RS04205 0.59 +0.9
885,575 + AMB_RS04205 0.59 +0.4
885,575 + AMB_RS04205 0.59 +0.1
885,575 + AMB_RS04205 0.59 -0.1
885,575 + AMB_RS04205 0.59 -0.4
885,575 + AMB_RS04205 0.59 -0.4
885,824 + AMB_RS04205 0.70 -1.7
885,824 + AMB_RS04205 0.70 -0.8
885,825 - AMB_RS04205 0.70 +0.6
885,825 - AMB_RS04205 0.70 +0.2
885,897 - AMB_RS04205 0.73 +0.3
886,206 - AMB_RS04205 0.86 +1.4
886,345 - +0.4
886,345 - +0.4
886,345 - +0.6
886,599 - -0.5
886,599 - -0.1
886,599 - -0.7
886,613 - -0.2
886,613 - +0.7
886,623 + -0.3
886,623 + -4.0
886,623 + +0.9
886,624 - -0.8
886,648 + -0.9
886,648 + -0.7
886,649 - +0.3
886,649 - +0.5
886,649 - -0.4
886,954 + AMB_RS04210 0.71 +0.2
886,954 + AMB_RS04210 0.71 -0.2
886,954 + AMB_RS04210 0.71 -0.9
886,955 - AMB_RS04210 0.71 +0.0
886,955 - AMB_RS04210 0.71 +0.1
886,955 - AMB_RS04210 0.71 -0.0
886,960 + AMB_RS04210 0.72 +0.0
886,960 + AMB_RS04210 0.72 -0.0
886,961 - AMB_RS04210 0.72 +0.6
886,961 - AMB_RS04210 0.72 -0.1
886,961 - AMB_RS04210 0.72 -1.1
887,020 + AMB_RS04210 0.85 -0.0
887,020 + AMB_RS04210 0.85 -0.5
887,020 + AMB_RS04210 0.85 -0.5
887,021 - AMB_RS04210 0.85 +0.2
887,021 - AMB_RS04210 0.85 +0.6
887,021 - AMB_RS04210 0.85 -0.0
887,133 + -0.1
887,133 + -0.8
887,241 + AMB_RS04215 0.31 -0.5
887,461 - AMB_RS04215 0.75 -1.4
887,487 + AMB_RS04215 0.81 -0.5
887,488 - AMB_RS04215 0.81 -0.4
887,488 - AMB_RS04215 0.81 -0.3

Or see this region's nucleotide sequence