Experiment: 150_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04090 and AMB_RS04095 are separated by 114 nucleotides AMB_RS04095 and AMB_RS04100 are separated by 132 nucleotides AMB_RS04100 and AMB_RS04105 are separated by 3 nucleotides
AMB_RS04090: AMB_RS04090 - MFS transporter, at 857,818 to 859,056
_RS04090
AMB_RS04095: AMB_RS04095 - 4-hydroxy-2-oxoheptanedioate aldolase, at 859,171 to 859,974
_RS04095
AMB_RS04100: AMB_RS04100 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, at 860,107 to 860,913
_RS04100
AMB_RS04105: AMB_RS04105 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 860,917 to 861,306
_RS04105
Position (kb) 859
860 Strain fitness (log2 ratio) -2
-1
0
1 at 858.646 kb on - strand, within AMB_RS04090 at 858.911 kb on + strand, within AMB_RS04090 at 858.912 kb on - strand, within AMB_RS04090 at 859.021 kb on - strand at 859.036 kb on + strand at 859.037 kb on - strand at 859.037 kb on - strand at 859.037 kb on - strand at 859.037 kb on - strand at 859.037 kb on - strand at 859.172 kb on + strand at 859.172 kb on + strand at 859.172 kb on + strand at 859.173 kb on - strand at 859.173 kb on - strand at 859.173 kb on - strand at 859.173 kb on - strand at 859.173 kb on - strand at 859.173 kb on - strand at 859.175 kb on + strand at 859.175 kb on + strand at 859.217 kb on + strand at 859.217 kb on + strand at 859.217 kb on + strand at 859.218 kb on - strand at 859.218 kb on - strand at 859.218 kb on - strand at 859.565 kb on + strand, within AMB_RS04095 at 859.565 kb on + strand, within AMB_RS04095 at 859.566 kb on - strand, within AMB_RS04095 at 859.566 kb on - strand, within AMB_RS04095 at 859.779 kb on - strand, within AMB_RS04095 at 859.887 kb on + strand, within AMB_RS04095 at 859.887 kb on + strand, within AMB_RS04095 at 859.888 kb on - strand, within AMB_RS04095 at 860.044 kb on - strand at 860.102 kb on + strand at 860.102 kb on + strand at 860.102 kb on + strand at 860.103 kb on - strand at 860.103 kb on - strand at 860.103 kb on - strand at 860.109 kb on - strand at 860.145 kb on - strand at 860.333 kb on + strand, within AMB_RS04100 at 860.333 kb on + strand, within AMB_RS04100 at 860.333 kb on + strand, within AMB_RS04100 at 860.333 kb on + strand, within AMB_RS04100 at 860.333 kb on + strand, within AMB_RS04100 at 860.334 kb on - strand, within AMB_RS04100 at 860.334 kb on - strand, within AMB_RS04100 at 860.334 kb on - strand, within AMB_RS04100 at 860.334 kb on - strand, within AMB_RS04100 at 860.513 kb on + strand, within AMB_RS04100 at 860.514 kb on - strand, within AMB_RS04100 at 860.514 kb on - strand, within AMB_RS04100 at 860.514 kb on - strand, within AMB_RS04100 at 860.514 kb on - strand, within AMB_RS04100 at 860.514 kb on - strand, within AMB_RS04100 at 860.514 kb on - strand, within AMB_RS04100 at 860.514 kb on - strand, within AMB_RS04100 at 860.793 kb on - strand, within AMB_RS04100
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_2 remove 858,646 - AMB_RS04090 0.67 -0.2 858,911 + AMB_RS04090 0.88 -0.2 858,912 - AMB_RS04090 0.88 +0.1 859,021 - +0.5 859,036 + -0.2 859,037 - +0.4 859,037 - -0.4 859,037 - +0.5 859,037 - -0.3 859,037 - -0.8 859,172 + +0.4 859,172 + -1.6 859,172 + -1.2 859,173 - -0.9 859,173 - -0.1 859,173 - -0.9 859,173 - +0.4 859,173 - -1.3 859,173 - -1.2 859,175 + -0.3 859,175 + -0.1 859,217 + -1.1 859,217 + -0.1 859,217 + +0.7 859,218 - -0.1 859,218 - -0.7 859,218 - +0.1 859,565 + AMB_RS04095 0.49 -0.2 859,565 + AMB_RS04095 0.49 +0.1 859,566 - AMB_RS04095 0.49 -0.3 859,566 - AMB_RS04095 0.49 -0.6 859,779 - AMB_RS04095 0.76 -0.0 859,887 + AMB_RS04095 0.89 -2.4 859,887 + AMB_RS04095 0.89 -0.4 859,888 - AMB_RS04095 0.89 +0.4 860,044 - -0.2 860,102 + -0.1 860,102 + -0.3 860,102 + -0.1 860,103 - +0.3 860,103 - -0.8 860,103 - +0.3 860,109 - -0.7 860,145 - -1.2 860,333 + AMB_RS04100 0.28 -0.8 860,333 + AMB_RS04100 0.28 -0.8 860,333 + AMB_RS04100 0.28 +0.8 860,333 + AMB_RS04100 0.28 +0.2 860,333 + AMB_RS04100 0.28 -0.0 860,334 - AMB_RS04100 0.28 -1.4 860,334 - AMB_RS04100 0.28 -0.6 860,334 - AMB_RS04100 0.28 -0.3 860,334 - AMB_RS04100 0.28 -1.0 860,513 + AMB_RS04100 0.50 +0.1 860,514 - AMB_RS04100 0.50 +0.1 860,514 - AMB_RS04100 0.50 -0.4 860,514 - AMB_RS04100 0.50 -1.6 860,514 - AMB_RS04100 0.50 +0.1 860,514 - AMB_RS04100 0.50 +0.3 860,514 - AMB_RS04100 0.50 -0.7 860,514 - AMB_RS04100 0.50 -0.5 860,793 - AMB_RS04100 0.85 -1.7
Or see this region's nucleotide sequence