Experiment: 150_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23145 and AMB_RS03740 are separated by 143 nucleotides AMB_RS03740 and AMB_RS03745 overlap by 1 nucleotides AMB_RS03745 and AMB_RS03750 are separated by 84 nucleotides
AMB_RS03735: AMB_RS03735 - methyl-accepting chemotaxis protein, at 789,398 to 790,561
_RS03735
AMB_RS23145: AMB_RS23145 - hypothetical protein, at 790,246 to 791,394
_RS23145
AMB_RS03740: AMB_RS03740 - signal transduction protein, at 791,538 to 793,577
_RS03740
AMB_RS03745: AMB_RS03745 - prolyl-tRNA synthetase associated domain-containing protein, at 793,577 to 794,068
_RS03745
AMB_RS03750: AMB_RS03750 - hypothetical protein, at 794,153 to 794,800
_RS03750
Position (kb) 791
792
793
794 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 791.098 kb on + strand, within AMB_RS23145 at 791.406 kb on - strand at 791.406 kb on - strand at 791.488 kb on + strand at 791.488 kb on + strand at 791.507 kb on - strand at 791.724 kb on + strand at 791.725 kb on - strand at 791.725 kb on - strand at 791.725 kb on - strand at 791.952 kb on + strand, within AMB_RS03740 at 791.953 kb on - strand, within AMB_RS03740 at 791.959 kb on - strand, within AMB_RS03740 at 792.042 kb on + strand, within AMB_RS03740 at 792.064 kb on + strand, within AMB_RS03740 at 792.064 kb on + strand, within AMB_RS03740 at 792.065 kb on - strand, within AMB_RS03740 at 792.075 kb on + strand, within AMB_RS03740 at 792.075 kb on + strand, within AMB_RS03740 at 792.075 kb on + strand, within AMB_RS03740 at 792.076 kb on - strand, within AMB_RS03740 at 792.076 kb on - strand, within AMB_RS03740 at 792.076 kb on - strand, within AMB_RS03740 at 792.099 kb on + strand, within AMB_RS03740 at 792.100 kb on - strand, within AMB_RS03740 at 792.138 kb on + strand, within AMB_RS03740 at 792.139 kb on - strand, within AMB_RS03740 at 792.276 kb on + strand, within AMB_RS03740 at 792.309 kb on + strand, within AMB_RS03740 at 792.310 kb on - strand, within AMB_RS03740 at 792.360 kb on + strand, within AMB_RS03740 at 792.361 kb on - strand, within AMB_RS03740 at 792.531 kb on + strand, within AMB_RS03740 at 792.532 kb on - strand, within AMB_RS03740 at 792.532 kb on - strand, within AMB_RS03740 at 792.532 kb on - strand, within AMB_RS03740 at 792.777 kb on + strand, within AMB_RS03740 at 792.777 kb on + strand, within AMB_RS03740 at 792.777 kb on + strand, within AMB_RS03740 at 792.777 kb on + strand, within AMB_RS03740 at 792.778 kb on - strand, within AMB_RS03740 at 792.778 kb on - strand, within AMB_RS03740 at 792.778 kb on - strand, within AMB_RS03740 at 792.778 kb on - strand, within AMB_RS03740 at 792.948 kb on + strand, within AMB_RS03740 at 792.948 kb on + strand, within AMB_RS03740 at 793.335 kb on + strand, within AMB_RS03740 at 793.336 kb on - strand, within AMB_RS03740 at 793.344 kb on + strand, within AMB_RS03740 at 793.344 kb on + strand, within AMB_RS03740 at 793.344 kb on + strand, within AMB_RS03740 at 793.344 kb on + strand, within AMB_RS03740 at 793.345 kb on - strand, within AMB_RS03740 at 793.345 kb on - strand, within AMB_RS03740 at 793.360 kb on - strand, within AMB_RS03740 at 793.360 kb on - strand, within AMB_RS03740 at 793.758 kb on + strand, within AMB_RS03745 at 793.967 kb on + strand, within AMB_RS03745 at 793.967 kb on + strand, within AMB_RS03745 at 793.967 kb on + strand, within AMB_RS03745 at 793.967 kb on + strand, within AMB_RS03745 at 793.967 kb on + strand, within AMB_RS03745 at 793.967 kb on + strand, within AMB_RS03745 at 793.967 kb on + strand, within AMB_RS03745 at 793.968 kb on - strand, within AMB_RS03745 at 793.968 kb on - strand, within AMB_RS03745 at 793.968 kb on - strand, within AMB_RS03745 at 793.987 kb on + strand, within AMB_RS03745 at 793.987 kb on + strand, within AMB_RS03745 at 793.987 kb on + strand, within AMB_RS03745 at 793.987 kb on + strand, within AMB_RS03745 at 793.988 kb on - strand, within AMB_RS03745 at 793.988 kb on - strand, within AMB_RS03745 at 793.988 kb on - strand, within AMB_RS03745 at 793.988 kb on - strand, within AMB_RS03745 at 793.988 kb on - strand, within AMB_RS03745 at 794.102 kb on + strand at 794.103 kb on - strand at 794.103 kb on - strand at 794.151 kb on + strand at 794.151 kb on + strand at 794.151 kb on + strand at 794.152 kb on - strand at 794.163 kb on + strand at 794.163 kb on + strand at 794.163 kb on + strand at 794.163 kb on + strand at 794.163 kb on + strand at 794.163 kb on + strand at 794.164 kb on - strand at 794.164 kb on - strand at 794.164 kb on - strand at 794.354 kb on + strand, within AMB_RS03750 at 794.355 kb on - strand, within AMB_RS03750 at 794.396 kb on + strand, within AMB_RS03750 at 794.453 kb on + strand, within AMB_RS03750 at 794.453 kb on + strand, within AMB_RS03750 at 794.453 kb on + strand, within AMB_RS03750 at 794.454 kb on - strand, within AMB_RS03750 at 794.468 kb on + strand, within AMB_RS03750 at 794.468 kb on + strand, within AMB_RS03750 at 794.468 kb on + strand, within AMB_RS03750 at 794.468 kb on + strand, within AMB_RS03750 at 794.468 kb on + strand, within AMB_RS03750 at 794.469 kb on - strand, within AMB_RS03750 at 794.469 kb on - strand, within AMB_RS03750 at 794.469 kb on - strand, within AMB_RS03750 at 794.469 kb on - strand, within AMB_RS03750 at 794.469 kb on - strand, within AMB_RS03750 at 794.469 kb on - strand, within AMB_RS03750 at 794.469 kb on - strand, within AMB_RS03750 at 794.469 kb on - strand, within AMB_RS03750 at 794.469 kb on - strand, within AMB_RS03750 at 794.469 kb on - strand, within AMB_RS03750
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_2 remove 791,098 + AMB_RS23145 0.74 +0.1 791,406 - +1.4 791,406 - -0.2 791,488 + -0.5 791,488 + +0.6 791,507 - -0.3 791,724 + -0.2 791,725 - +0.1 791,725 - +0.4 791,725 - -0.1 791,952 + AMB_RS03740 0.20 -0.4 791,953 - AMB_RS03740 0.20 +0.6 791,959 - AMB_RS03740 0.21 +0.1 792,042 + AMB_RS03740 0.25 -0.5 792,064 + AMB_RS03740 0.26 +0.7 792,064 + AMB_RS03740 0.26 -0.1 792,065 - AMB_RS03740 0.26 -0.1 792,075 + AMB_RS03740 0.26 -0.5 792,075 + AMB_RS03740 0.26 -0.0 792,075 + AMB_RS03740 0.26 +0.1 792,076 - AMB_RS03740 0.26 +0.1 792,076 - AMB_RS03740 0.26 -0.2 792,076 - AMB_RS03740 0.26 -0.6 792,099 + AMB_RS03740 0.28 +0.1 792,100 - AMB_RS03740 0.28 +0.0 792,138 + AMB_RS03740 0.29 -0.4 792,139 - AMB_RS03740 0.29 +1.1 792,276 + AMB_RS03740 0.36 -1.2 792,309 + AMB_RS03740 0.38 +0.3 792,310 - AMB_RS03740 0.38 -1.0 792,360 + AMB_RS03740 0.40 -0.0 792,361 - AMB_RS03740 0.40 -0.7 792,531 + AMB_RS03740 0.49 +0.5 792,532 - AMB_RS03740 0.49 +0.4 792,532 - AMB_RS03740 0.49 -0.2 792,532 - AMB_RS03740 0.49 -0.2 792,777 + AMB_RS03740 0.61 -0.8 792,777 + AMB_RS03740 0.61 +1.1 792,777 + AMB_RS03740 0.61 +0.6 792,777 + AMB_RS03740 0.61 -0.4 792,778 - AMB_RS03740 0.61 -0.9 792,778 - AMB_RS03740 0.61 -0.0 792,778 - AMB_RS03740 0.61 -0.3 792,778 - AMB_RS03740 0.61 -0.5 792,948 + AMB_RS03740 0.69 -0.6 792,948 + AMB_RS03740 0.69 +1.8 793,335 + AMB_RS03740 0.88 -0.7 793,336 - AMB_RS03740 0.88 -0.5 793,344 + AMB_RS03740 0.89 +0.1 793,344 + AMB_RS03740 0.89 +0.1 793,344 + AMB_RS03740 0.89 -0.5 793,344 + AMB_RS03740 0.89 -0.3 793,345 - AMB_RS03740 0.89 -0.3 793,345 - AMB_RS03740 0.89 -0.6 793,360 - AMB_RS03740 0.89 -0.4 793,360 - AMB_RS03740 0.89 -0.2 793,758 + AMB_RS03745 0.37 -0.2 793,967 + AMB_RS03745 0.79 +0.2 793,967 + AMB_RS03745 0.79 -0.6 793,967 + AMB_RS03745 0.79 -0.2 793,967 + AMB_RS03745 0.79 +0.1 793,967 + AMB_RS03745 0.79 -1.5 793,967 + AMB_RS03745 0.79 +1.1 793,967 + AMB_RS03745 0.79 -0.4 793,968 - AMB_RS03745 0.79 +0.3 793,968 - AMB_RS03745 0.79 -3.6 793,968 - AMB_RS03745 0.79 -0.1 793,987 + AMB_RS03745 0.83 -0.3 793,987 + AMB_RS03745 0.83 -0.5 793,987 + AMB_RS03745 0.83 -1.4 793,987 + AMB_RS03745 0.83 +0.1 793,988 - AMB_RS03745 0.84 -2.2 793,988 - AMB_RS03745 0.84 -0.6 793,988 - AMB_RS03745 0.84 +0.3 793,988 - AMB_RS03745 0.84 -0.8 793,988 - AMB_RS03745 0.84 -0.9 794,102 + +0.1 794,103 - +0.3 794,103 - +0.4 794,151 + -0.7 794,151 + -0.7 794,151 + -0.3 794,152 - +0.6 794,163 + +0.2 794,163 + +0.1 794,163 + -0.8 794,163 + -0.1 794,163 + +0.0 794,163 + -0.3 794,164 - -1.2 794,164 - +0.2 794,164 - -0.4 794,354 + AMB_RS03750 0.31 +2.4 794,355 - AMB_RS03750 0.31 -0.2 794,396 + AMB_RS03750 0.38 +0.1 794,453 + AMB_RS03750 0.46 -0.6 794,453 + AMB_RS03750 0.46 -0.3 794,453 + AMB_RS03750 0.46 -1.1 794,454 - AMB_RS03750 0.46 -0.1 794,468 + AMB_RS03750 0.49 +0.2 794,468 + AMB_RS03750 0.49 -0.7 794,468 + AMB_RS03750 0.49 +0.0 794,468 + AMB_RS03750 0.49 -1.5 794,468 + AMB_RS03750 0.49 -0.1 794,469 - AMB_RS03750 0.49 -0.9 794,469 - AMB_RS03750 0.49 +0.1 794,469 - AMB_RS03750 0.49 -0.2 794,469 - AMB_RS03750 0.49 -0.8 794,469 - AMB_RS03750 0.49 -0.7 794,469 - AMB_RS03750 0.49 -0.3 794,469 - AMB_RS03750 0.49 +0.9 794,469 - AMB_RS03750 0.49 -1.9 794,469 - AMB_RS03750 0.49 -1.3 794,469 - AMB_RS03750 0.49 -0.8
Or see this region's nucleotide sequence