Experiment: 150_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03180 and AMB_RS03185 are separated by 1 nucleotides AMB_RS03185 and AMB_RS03190 are separated by 4 nucleotides AMB_RS03190 and AMB_RS03195 overlap by 17 nucleotides
AMB_RS03180: AMB_RS03180 - flagellar biosynthetic protein FliQ, at 660,763 to 661,032
_RS03180
AMB_RS03185: AMB_RS03185 - flagellar type III secretion system protein FliR, at 661,034 to 661,798
_RS03185
AMB_RS03190: AMB_RS03190 - flagellar biosynthesis protein FlhB, at 661,803 to 662,870
_RS03190
AMB_RS03195: AMB_RS03195 - PAS domain-containing sensor histidine kinase, at 662,854 to 665,244
_RS03195
Position (kb) 661
662
663 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 660.959 kb on + strand, within AMB_RS03180 at 660.960 kb on - strand, within AMB_RS03180 at 661.084 kb on + strand at 661.085 kb on - strand at 661.085 kb on - strand at 661.085 kb on - strand at 661.155 kb on + strand, within AMB_RS03185 at 661.277 kb on + strand, within AMB_RS03185 at 661.278 kb on - strand, within AMB_RS03185 at 661.278 kb on - strand, within AMB_RS03185 at 661.278 kb on - strand, within AMB_RS03185 at 661.340 kb on + strand, within AMB_RS03185 at 661.420 kb on + strand, within AMB_RS03185 at 661.423 kb on + strand, within AMB_RS03185 at 661.454 kb on - strand, within AMB_RS03185 at 661.454 kb on - strand, within AMB_RS03185 at 661.490 kb on + strand, within AMB_RS03185 at 661.490 kb on + strand, within AMB_RS03185 at 661.490 kb on + strand, within AMB_RS03185 at 661.490 kb on + strand, within AMB_RS03185 at 661.491 kb on - strand, within AMB_RS03185 at 661.491 kb on - strand, within AMB_RS03185 at 661.491 kb on - strand, within AMB_RS03185 at 661.493 kb on + strand, within AMB_RS03185 at 661.493 kb on + strand, within AMB_RS03185 at 661.493 kb on + strand, within AMB_RS03185 at 661.493 kb on + strand, within AMB_RS03185 at 661.493 kb on + strand, within AMB_RS03185 at 661.493 kb on + strand, within AMB_RS03185 at 661.493 kb on + strand, within AMB_RS03185 at 661.493 kb on + strand, within AMB_RS03185 at 661.493 kb on + strand, within AMB_RS03185 at 661.494 kb on - strand, within AMB_RS03185 at 661.494 kb on - strand, within AMB_RS03185 at 661.494 kb on - strand, within AMB_RS03185 at 661.494 kb on - strand, within AMB_RS03185 at 661.532 kb on + strand, within AMB_RS03185 at 661.532 kb on + strand, within AMB_RS03185 at 661.545 kb on + strand, within AMB_RS03185 at 661.558 kb on + strand, within AMB_RS03185 at 661.615 kb on - strand, within AMB_RS03185 at 661.615 kb on - strand, within AMB_RS03185 at 661.615 kb on - strand, within AMB_RS03185 at 661.615 kb on - strand, within AMB_RS03185 at 661.622 kb on + strand, within AMB_RS03185 at 661.622 kb on + strand, within AMB_RS03185 at 661.622 kb on + strand, within AMB_RS03185 at 661.622 kb on + strand, within AMB_RS03185 at 661.623 kb on - strand, within AMB_RS03185 at 661.623 kb on - strand, within AMB_RS03185 at 661.681 kb on + strand, within AMB_RS03185 at 661.781 kb on + strand at 661.781 kb on + strand at 661.782 kb on - strand at 661.796 kb on + strand at 661.796 kb on + strand at 661.797 kb on - strand at 661.797 kb on - strand at 661.797 kb on - strand at 661.877 kb on + strand at 661.953 kb on + strand, within AMB_RS03190 at 661.953 kb on + strand, within AMB_RS03190 at 661.953 kb on + strand, within AMB_RS03190 at 661.953 kb on + strand, within AMB_RS03190 at 661.953 kb on + strand, within AMB_RS03190 at 661.953 kb on + strand, within AMB_RS03190 at 661.954 kb on - strand, within AMB_RS03190 at 661.954 kb on - strand, within AMB_RS03190 at 661.954 kb on - strand, within AMB_RS03190 at 662.300 kb on + strand, within AMB_RS03190 at 662.301 kb on - strand, within AMB_RS03190 at 662.301 kb on - strand, within AMB_RS03190 at 662.310 kb on + strand, within AMB_RS03190 at 662.310 kb on + strand, within AMB_RS03190 at 662.310 kb on + strand, within AMB_RS03190 at 662.352 kb on + strand, within AMB_RS03190 at 662.353 kb on - strand, within AMB_RS03190 at 662.353 kb on - strand, within AMB_RS03190 at 662.430 kb on + strand, within AMB_RS03190 at 662.430 kb on + strand, within AMB_RS03190 at 662.431 kb on - strand, within AMB_RS03190 at 662.431 kb on - strand, within AMB_RS03190 at 662.431 kb on - strand, within AMB_RS03190 at 662.431 kb on - strand, within AMB_RS03190 at 662.616 kb on + strand, within AMB_RS03190 at 662.617 kb on - strand, within AMB_RS03190 at 662.634 kb on + strand, within AMB_RS03190 at 662.635 kb on - strand, within AMB_RS03190 at 662.808 kb on + strand at 662.809 kb on - strand at 662.835 kb on + strand at 662.836 kb on - strand at 662.836 kb on - strand at 662.836 kb on - strand at 662.868 kb on + strand at 662.869 kb on - strand at 663.443 kb on - strand, within AMB_RS03195 at 663.443 kb on - strand, within AMB_RS03195 at 663.472 kb on + strand, within AMB_RS03195
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_2 remove 660,959 + AMB_RS03180 0.73 +0.4 660,960 - AMB_RS03180 0.73 +0.8 661,084 + +0.8 661,085 - -0.1 661,085 - -0.4 661,085 - -1.4 661,155 + AMB_RS03185 0.16 +0.4 661,277 + AMB_RS03185 0.32 -0.1 661,278 - AMB_RS03185 0.32 +0.1 661,278 - AMB_RS03185 0.32 -2.3 661,278 - AMB_RS03185 0.32 -0.1 661,340 + AMB_RS03185 0.40 +0.2 661,420 + AMB_RS03185 0.50 -0.0 661,423 + AMB_RS03185 0.51 -0.1 661,454 - AMB_RS03185 0.55 -1.1 661,454 - AMB_RS03185 0.55 -0.4 661,490 + AMB_RS03185 0.60 -0.7 661,490 + AMB_RS03185 0.60 -0.4 661,490 + AMB_RS03185 0.60 -4.6 661,490 + AMB_RS03185 0.60 -1.4 661,491 - AMB_RS03185 0.60 -0.5 661,491 - AMB_RS03185 0.60 -2.9 661,491 - AMB_RS03185 0.60 -1.4 661,493 + AMB_RS03185 0.60 -1.0 661,493 + AMB_RS03185 0.60 -0.3 661,493 + AMB_RS03185 0.60 -0.1 661,493 + AMB_RS03185 0.60 -0.5 661,493 + AMB_RS03185 0.60 -1.1 661,493 + AMB_RS03185 0.60 -0.1 661,493 + AMB_RS03185 0.60 -0.9 661,493 + AMB_RS03185 0.60 -0.2 661,493 + AMB_RS03185 0.60 -1.4 661,494 - AMB_RS03185 0.60 -0.5 661,494 - AMB_RS03185 0.60 -1.9 661,494 - AMB_RS03185 0.60 +0.0 661,494 - AMB_RS03185 0.60 +0.1 661,532 + AMB_RS03185 0.65 -0.3 661,532 + AMB_RS03185 0.65 -1.9 661,545 + AMB_RS03185 0.67 -0.8 661,558 + AMB_RS03185 0.68 -2.3 661,615 - AMB_RS03185 0.76 -0.1 661,615 - AMB_RS03185 0.76 -0.3 661,615 - AMB_RS03185 0.76 -1.0 661,615 - AMB_RS03185 0.76 +0.7 661,622 + AMB_RS03185 0.77 -1.3 661,622 + AMB_RS03185 0.77 +0.9 661,622 + AMB_RS03185 0.77 +0.1 661,622 + AMB_RS03185 0.77 -0.5 661,623 - AMB_RS03185 0.77 -0.5 661,623 - AMB_RS03185 0.77 -0.2 661,681 + AMB_RS03185 0.85 +0.8 661,781 + -0.2 661,781 + +0.1 661,782 - +0.0 661,796 + -0.4 661,796 + -0.9 661,797 - +0.1 661,797 - -0.6 661,797 - +1.1 661,877 + -0.3 661,953 + AMB_RS03190 0.14 +0.7 661,953 + AMB_RS03190 0.14 -0.5 661,953 + AMB_RS03190 0.14 -0.3 661,953 + AMB_RS03190 0.14 -1.9 661,953 + AMB_RS03190 0.14 -0.1 661,953 + AMB_RS03190 0.14 +0.2 661,954 - AMB_RS03190 0.14 +0.1 661,954 - AMB_RS03190 0.14 -1.0 661,954 - AMB_RS03190 0.14 +0.1 662,300 + AMB_RS03190 0.47 +0.6 662,301 - AMB_RS03190 0.47 +0.1 662,301 - AMB_RS03190 0.47 -0.5 662,310 + AMB_RS03190 0.47 -0.2 662,310 + AMB_RS03190 0.47 -0.4 662,310 + AMB_RS03190 0.47 -0.3 662,352 + AMB_RS03190 0.51 +1.1 662,353 - AMB_RS03190 0.51 -0.7 662,353 - AMB_RS03190 0.51 +0.3 662,430 + AMB_RS03190 0.59 -0.1 662,430 + AMB_RS03190 0.59 +0.3 662,431 - AMB_RS03190 0.59 -0.3 662,431 - AMB_RS03190 0.59 -0.9 662,431 - AMB_RS03190 0.59 -1.3 662,431 - AMB_RS03190 0.59 -0.6 662,616 + AMB_RS03190 0.76 -0.9 662,617 - AMB_RS03190 0.76 -0.2 662,634 + AMB_RS03190 0.78 -1.0 662,635 - AMB_RS03190 0.78 -0.1 662,808 + -0.2 662,809 - -1.6 662,835 + -0.2 662,836 - -0.3 662,836 - -0.0 662,836 - -0.6 662,868 + +0.4 662,869 - -0.7 663,443 - AMB_RS03195 0.25 -0.5 663,443 - AMB_RS03195 0.25 -0.1 663,472 + AMB_RS03195 0.26 +1.3
Or see this region's nucleotide sequence