Experiment: 150_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02855 and AMB_RS02860 are separated by 109 nucleotides AMB_RS02860 and AMB_RS02865 are separated by 16 nucleotides AMB_RS02865 and AMB_RS02870 are separated by 273 nucleotides
AMB_RS02855: AMB_RS02855 - methyl-accepting chemotaxis protein, at 598,134 to 599,798
_RS02855
AMB_RS02860: AMB_RS02860 - hypothetical protein, at 599,908 to 600,099
_RS02860
AMB_RS02865: AMB_RS02865 - response regulator, at 600,116 to 601,165
_RS02865
AMB_RS02870: AMB_RS02870 - methyl-accepting chemotaxis protein, at 601,439 to 603,199
_RS02870
Position (kb) 600
601
602 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 599.475 kb on - strand, within AMB_RS02855 at 599.475 kb on - strand, within AMB_RS02855 at 599.475 kb on - strand, within AMB_RS02855 at 599.475 kb on - strand, within AMB_RS02855 at 599.541 kb on - strand, within AMB_RS02855 at 599.552 kb on + strand, within AMB_RS02855 at 599.553 kb on - strand, within AMB_RS02855 at 599.649 kb on + strand at 599.649 kb on + strand at 599.649 kb on + strand at 599.650 kb on - strand at 599.871 kb on + strand at 599.871 kb on + strand at 599.871 kb on + strand at 599.871 kb on + strand at 599.872 kb on - strand at 599.877 kb on + strand at 599.883 kb on + strand at 599.883 kb on + strand at 599.884 kb on - strand at 599.904 kb on - strand at 599.978 kb on - strand, within AMB_RS02860 at 599.999 kb on + strand, within AMB_RS02860 at 599.999 kb on + strand, within AMB_RS02860 at 600.000 kb on - strand, within AMB_RS02860 at 600.097 kb on + strand at 600.117 kb on + strand at 600.118 kb on - strand at 600.118 kb on - strand at 600.118 kb on - strand at 600.189 kb on - strand at 600.204 kb on + strand at 600.654 kb on + strand, within AMB_RS02865 at 600.654 kb on + strand, within AMB_RS02865 at 600.654 kb on + strand, within AMB_RS02865 at 600.655 kb on - strand, within AMB_RS02865 at 600.655 kb on - strand, within AMB_RS02865 at 600.772 kb on - strand, within AMB_RS02865 at 600.781 kb on + strand, within AMB_RS02865 at 600.782 kb on - strand, within AMB_RS02865 at 600.822 kb on + strand, within AMB_RS02865 at 600.822 kb on + strand, within AMB_RS02865 at 600.823 kb on - strand, within AMB_RS02865 at 600.823 kb on - strand, within AMB_RS02865 at 601.115 kb on + strand at 601.115 kb on + strand at 601.116 kb on - strand at 601.116 kb on - strand at 601.241 kb on - strand at 601.349 kb on + strand at 601.369 kb on + strand at 601.775 kb on + strand, within AMB_RS02870 at 601.775 kb on + strand, within AMB_RS02870 at 601.775 kb on + strand, within AMB_RS02870 at 601.775 kb on + strand, within AMB_RS02870 at 601.776 kb on - strand, within AMB_RS02870 at 601.776 kb on - strand, within AMB_RS02870 at 601.776 kb on - strand, within AMB_RS02870 at 601.793 kb on + strand, within AMB_RS02870 at 601.794 kb on - strand, within AMB_RS02870 at 601.877 kb on + strand, within AMB_RS02870 at 601.877 kb on + strand, within AMB_RS02870 at 601.877 kb on + strand, within AMB_RS02870 at 601.877 kb on + strand, within AMB_RS02870 at 601.877 kb on + strand, within AMB_RS02870 at 601.877 kb on + strand, within AMB_RS02870 at 601.877 kb on + strand, within AMB_RS02870 at 601.877 kb on + strand, within AMB_RS02870 at 601.878 kb on - strand, within AMB_RS02870 at 601.878 kb on - strand, within AMB_RS02870 at 601.878 kb on - strand, within AMB_RS02870 at 601.878 kb on - strand, within AMB_RS02870 at 601.878 kb on - strand, within AMB_RS02870 at 601.878 kb on - strand, within AMB_RS02870 at 601.937 kb on + strand, within AMB_RS02870 at 601.937 kb on + strand, within AMB_RS02870 at 601.937 kb on + strand, within AMB_RS02870 at 601.937 kb on + strand, within AMB_RS02870 at 601.938 kb on - strand, within AMB_RS02870 at 601.938 kb on - strand, within AMB_RS02870 at 601.960 kb on + strand, within AMB_RS02870 at 601.985 kb on + strand, within AMB_RS02870 at 601.985 kb on + strand, within AMB_RS02870 at 601.986 kb on - strand, within AMB_RS02870 at 601.986 kb on - strand, within AMB_RS02870 at 601.986 kb on - strand, within AMB_RS02870 at 601.986 kb on - strand, within AMB_RS02870 at 601.986 kb on - strand, within AMB_RS02870 at 601.997 kb on + strand, within AMB_RS02870 at 601.997 kb on + strand, within AMB_RS02870 at 601.997 kb on + strand, within AMB_RS02870 at 601.997 kb on + strand, within AMB_RS02870 at 601.997 kb on + strand, within AMB_RS02870 at 601.997 kb on + strand, within AMB_RS02870 at 601.998 kb on - strand, within AMB_RS02870 at 601.998 kb on - strand, within AMB_RS02870 at 601.998 kb on - strand, within AMB_RS02870 at 602.033 kb on + strand, within AMB_RS02870 at 602.033 kb on + strand, within AMB_RS02870 at 602.033 kb on + strand, within AMB_RS02870 at 602.033 kb on + strand, within AMB_RS02870 at 602.034 kb on - strand, within AMB_RS02870 at 602.058 kb on - strand, within AMB_RS02870 at 602.058 kb on - strand, within AMB_RS02870
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_2 remove 599,475 - AMB_RS02855 0.81 +1.3 599,475 - AMB_RS02855 0.81 -0.3 599,475 - AMB_RS02855 0.81 -0.3 599,475 - AMB_RS02855 0.81 +0.1 599,541 - AMB_RS02855 0.85 -1.4 599,552 + AMB_RS02855 0.85 -1.1 599,553 - AMB_RS02855 0.85 -0.1 599,649 + -0.6 599,649 + -0.8 599,649 + -1.1 599,650 - +0.3 599,871 + +1.2 599,871 + -0.2 599,871 + -0.1 599,871 + -0.7 599,872 - -0.0 599,877 + -0.3 599,883 + +0.1 599,883 + -0.5 599,884 - -1.5 599,904 - -0.0 599,978 - AMB_RS02860 0.36 +0.0 599,999 + AMB_RS02860 0.47 -0.9 599,999 + AMB_RS02860 0.47 +0.4 600,000 - AMB_RS02860 0.48 -1.1 600,097 + -0.4 600,117 + -0.1 600,118 - +0.2 600,118 - -0.3 600,118 - -1.6 600,189 - +0.2 600,204 + +1.1 600,654 + AMB_RS02865 0.51 -0.2 600,654 + AMB_RS02865 0.51 -0.8 600,654 + AMB_RS02865 0.51 -0.1 600,655 - AMB_RS02865 0.51 -0.4 600,655 - AMB_RS02865 0.51 -0.6 600,772 - AMB_RS02865 0.62 -0.0 600,781 + AMB_RS02865 0.63 -0.6 600,782 - AMB_RS02865 0.63 -0.4 600,822 + AMB_RS02865 0.67 -0.4 600,822 + AMB_RS02865 0.67 -0.6 600,823 - AMB_RS02865 0.67 +0.1 600,823 - AMB_RS02865 0.67 -1.5 601,115 + +0.6 601,115 + -0.1 601,116 - -1.4 601,116 - +0.4 601,241 - -1.0 601,349 + +0.1 601,369 + +0.6 601,775 + AMB_RS02870 0.19 -0.3 601,775 + AMB_RS02870 0.19 +0.2 601,775 + AMB_RS02870 0.19 +0.4 601,775 + AMB_RS02870 0.19 -0.9 601,776 - AMB_RS02870 0.19 -2.5 601,776 - AMB_RS02870 0.19 -0.9 601,776 - AMB_RS02870 0.19 -0.3 601,793 + AMB_RS02870 0.20 +0.4 601,794 - AMB_RS02870 0.20 -0.7 601,877 + AMB_RS02870 0.25 -0.4 601,877 + AMB_RS02870 0.25 -0.9 601,877 + AMB_RS02870 0.25 -0.1 601,877 + AMB_RS02870 0.25 -0.2 601,877 + AMB_RS02870 0.25 -0.9 601,877 + AMB_RS02870 0.25 -1.0 601,877 + AMB_RS02870 0.25 -1.5 601,877 + AMB_RS02870 0.25 -0.9 601,878 - AMB_RS02870 0.25 -0.5 601,878 - AMB_RS02870 0.25 -0.1 601,878 - AMB_RS02870 0.25 -0.6 601,878 - AMB_RS02870 0.25 -0.4 601,878 - AMB_RS02870 0.25 +0.3 601,878 - AMB_RS02870 0.25 -0.2 601,937 + AMB_RS02870 0.28 +0.2 601,937 + AMB_RS02870 0.28 -0.7 601,937 + AMB_RS02870 0.28 -1.2 601,937 + AMB_RS02870 0.28 -0.4 601,938 - AMB_RS02870 0.28 -0.2 601,938 - AMB_RS02870 0.28 +0.3 601,960 + AMB_RS02870 0.30 -0.0 601,985 + AMB_RS02870 0.31 +0.1 601,985 + AMB_RS02870 0.31 +0.4 601,986 - AMB_RS02870 0.31 +0.1 601,986 - AMB_RS02870 0.31 +0.1 601,986 - AMB_RS02870 0.31 -0.5 601,986 - AMB_RS02870 0.31 -0.3 601,986 - AMB_RS02870 0.31 -0.5 601,997 + AMB_RS02870 0.32 +0.0 601,997 + AMB_RS02870 0.32 -0.1 601,997 + AMB_RS02870 0.32 +0.1 601,997 + AMB_RS02870 0.32 -3.1 601,997 + AMB_RS02870 0.32 -0.2 601,997 + AMB_RS02870 0.32 -0.7 601,998 - AMB_RS02870 0.32 -0.9 601,998 - AMB_RS02870 0.32 -0.1 601,998 - AMB_RS02870 0.32 +0.3 602,033 + AMB_RS02870 0.34 -0.5 602,033 + AMB_RS02870 0.34 -0.4 602,033 + AMB_RS02870 0.34 +0.1 602,033 + AMB_RS02870 0.34 -0.4 602,034 - AMB_RS02870 0.34 -1.0 602,058 - AMB_RS02870 0.35 -0.9 602,058 - AMB_RS02870 0.35 -0.2
Or see this region's nucleotide sequence