Experiment: 150_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02040 and AMB_RS02045 are separated by 253 nucleotides
AMB_RS02040: AMB_RS02040 - hypothetical protein, at 431,143 to 431,541
_RS02040
AMB_RS02045: AMB_RS02045 - hypothetical protein, at 431,795 to 432,820
_RS02045
Position (kb) 431
432
433 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 430.833 kb on + strand at 430.833 kb on + strand at 430.834 kb on - strand at 430.834 kb on - strand at 430.834 kb on - strand at 430.840 kb on + strand at 430.840 kb on + strand at 430.840 kb on + strand at 430.840 kb on + strand at 430.840 kb on + strand at 430.841 kb on - strand at 430.841 kb on - strand at 430.842 kb on + strand at 430.842 kb on + strand at 430.842 kb on + strand at 430.842 kb on + strand at 430.842 kb on + strand at 430.842 kb on + strand at 430.843 kb on - strand at 430.843 kb on - strand at 430.843 kb on - strand at 430.843 kb on - strand at 430.909 kb on - strand at 430.922 kb on + strand at 430.923 kb on - strand at 430.923 kb on - strand at 430.989 kb on - strand at 431.017 kb on + strand at 431.017 kb on + strand at 431.017 kb on + strand at 431.318 kb on + strand, within AMB_RS02040 at 431.319 kb on - strand, within AMB_RS02040 at 431.420 kb on + strand, within AMB_RS02040 at 431.420 kb on + strand, within AMB_RS02040 at 431.420 kb on + strand, within AMB_RS02040 at 431.420 kb on + strand, within AMB_RS02040 at 431.420 kb on + strand, within AMB_RS02040 at 431.420 kb on + strand, within AMB_RS02040 at 431.421 kb on - strand, within AMB_RS02040 at 431.421 kb on - strand, within AMB_RS02040 at 431.462 kb on + strand, within AMB_RS02040 at 431.462 kb on + strand, within AMB_RS02040 at 431.463 kb on - strand, within AMB_RS02040 at 431.463 kb on - strand, within AMB_RS02040 at 431.560 kb on + strand at 431.670 kb on - strand at 431.723 kb on - strand at 431.780 kb on + strand at 431.873 kb on + strand at 431.923 kb on - strand, within AMB_RS02045 at 432.018 kb on + strand, within AMB_RS02045 at 432.018 kb on + strand, within AMB_RS02045 at 432.070 kb on + strand, within AMB_RS02045 at 432.070 kb on + strand, within AMB_RS02045 at 432.070 kb on + strand, within AMB_RS02045 at 432.071 kb on - strand, within AMB_RS02045 at 432.185 kb on - strand, within AMB_RS02045 at 432.254 kb on - strand, within AMB_RS02045 at 432.331 kb on + strand, within AMB_RS02045 at 432.332 kb on - strand, within AMB_RS02045 at 432.553 kb on + strand, within AMB_RS02045 at 432.554 kb on - strand, within AMB_RS02045 at 432.703 kb on + strand, within AMB_RS02045 at 432.703 kb on + strand, within AMB_RS02045 at 432.743 kb on + strand at 432.743 kb on + strand at 432.743 kb on + strand at 432.743 kb on + strand at 432.744 kb on - strand at 432.772 kb on + strand at 432.773 kb on - strand at 432.811 kb on - strand at 432.864 kb on + strand at 432.864 kb on + strand at 432.865 kb on - strand at 432.869 kb on - strand at 432.869 kb on - strand at 432.900 kb on + strand at 432.900 kb on + strand at 432.900 kb on + strand at 432.901 kb on - strand at 432.942 kb on + strand at 432.943 kb on - strand at 432.966 kb on + strand at 432.966 kb on + strand at 432.967 kb on - strand at 432.967 kb on - strand at 432.967 kb on - strand at 433.162 kb on + strand at 433.163 kb on - strand at 433.178 kb on - strand at 433.185 kb on + strand at 433.186 kb on - strand at 433.186 kb on - strand at 433.192 kb on + strand at 433.192 kb on + strand at 433.192 kb on + strand at 433.192 kb on + strand at 433.193 kb on - strand at 433.223 kb on + strand at 433.223 kb on + strand at 433.223 kb on + strand at 433.223 kb on + strand at 433.223 kb on + strand at 433.224 kb on - strand at 433.224 kb on - strand at 433.224 kb on - strand at 433.352 kb on - strand at 433.352 kb on - strand at 433.389 kb on + strand at 433.389 kb on + strand at 433.390 kb on - strand at 433.390 kb on - strand at 433.390 kb on - strand at 433.390 kb on - strand at 433.393 kb on + strand at 433.393 kb on + strand at 433.393 kb on + strand at 433.394 kb on - strand at 433.394 kb on - strand at 433.394 kb on - strand at 433.394 kb on - strand at 433.723 kb on - strand at 433.723 kb on - strand at 433.723 kb on - strand at 433.756 kb on + strand at 433.757 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_2 remove 430,833 + -0.5 430,833 + -0.4 430,834 - -1.5 430,834 - -0.8 430,834 - -0.2 430,840 + -1.1 430,840 + -0.1 430,840 + -0.3 430,840 + -1.2 430,840 + -0.9 430,841 - -0.5 430,841 - -0.7 430,842 + +1.6 430,842 + -0.6 430,842 + -0.4 430,842 + -0.5 430,842 + -1.0 430,842 + -1.7 430,843 - +0.2 430,843 - +0.1 430,843 - +0.1 430,843 - -0.5 430,909 - -0.6 430,922 + -0.5 430,923 - +1.4 430,923 - +1.0 430,989 - -0.5 431,017 + -0.9 431,017 + +0.6 431,017 + -0.5 431,318 + AMB_RS02040 0.44 -0.2 431,319 - AMB_RS02040 0.44 -0.1 431,420 + AMB_RS02040 0.69 -0.9 431,420 + AMB_RS02040 0.69 -0.7 431,420 + AMB_RS02040 0.69 -0.1 431,420 + AMB_RS02040 0.69 -0.3 431,420 + AMB_RS02040 0.69 -0.3 431,420 + AMB_RS02040 0.69 +0.6 431,421 - AMB_RS02040 0.70 -0.3 431,421 - AMB_RS02040 0.70 -0.2 431,462 + AMB_RS02040 0.80 -1.5 431,462 + AMB_RS02040 0.80 +0.4 431,463 - AMB_RS02040 0.80 +0.1 431,463 - AMB_RS02040 0.80 -0.8 431,560 + +0.5 431,670 - -0.3 431,723 - -0.2 431,780 + +0.1 431,873 + -0.0 431,923 - AMB_RS02045 0.12 -0.0 432,018 + AMB_RS02045 0.22 +0.2 432,018 + AMB_RS02045 0.22 +0.1 432,070 + AMB_RS02045 0.27 -1.4 432,070 + AMB_RS02045 0.27 +0.4 432,070 + AMB_RS02045 0.27 -0.1 432,071 - AMB_RS02045 0.27 -0.2 432,185 - AMB_RS02045 0.38 +0.1 432,254 - AMB_RS02045 0.45 -0.3 432,331 + AMB_RS02045 0.52 -0.2 432,332 - AMB_RS02045 0.52 +0.1 432,553 + AMB_RS02045 0.74 +0.1 432,554 - AMB_RS02045 0.74 +0.2 432,703 + AMB_RS02045 0.88 -0.1 432,703 + AMB_RS02045 0.88 +0.0 432,743 + +0.3 432,743 + +0.6 432,743 + +0.7 432,743 + -0.5 432,744 - +0.3 432,772 + -2.7 432,773 - +1.2 432,811 - +0.6 432,864 + -0.2 432,864 + +0.0 432,865 - +1.1 432,869 - -1.1 432,869 - +1.3 432,900 + +0.1 432,900 + -0.3 432,900 + -0.9 432,901 - +0.2 432,942 + +0.1 432,943 - -0.6 432,966 + -0.6 432,966 + -0.9 432,967 - +0.5 432,967 - -0.5 432,967 - -0.7 433,162 + -0.0 433,163 - +0.0 433,178 - -0.9 433,185 + +0.3 433,186 - +0.2 433,186 - +0.1 433,192 + -0.0 433,192 + -0.4 433,192 + -0.7 433,192 + -0.5 433,193 - -3.1 433,223 + +0.0 433,223 + -0.8 433,223 + +0.3 433,223 + +0.0 433,223 + +0.6 433,224 - -0.3 433,224 - -1.0 433,224 - +0.1 433,352 - -0.2 433,352 - +0.4 433,389 + -1.1 433,389 + +0.6 433,390 - +0.3 433,390 - -0.1 433,390 - +0.0 433,390 - -0.2 433,393 + -0.1 433,393 + -0.1 433,393 + -0.4 433,394 - +0.5 433,394 - +0.1 433,394 - -1.3 433,394 - +0.8 433,723 - +0.5 433,723 - -1.0 433,723 - -0.4 433,756 + +1.5 433,757 - +0.5
Or see this region's nucleotide sequence