Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01820

Experiment: 150_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01810 and AMB_RS01815 overlap by 4 nucleotidesAMB_RS01815 and AMB_RS01820 overlap by 1 nucleotidesAMB_RS01820 and AMB_RS01825 are separated by 391 nucleotidesAMB_RS01825 and AMB_RS01830 overlap by 4 nucleotides AMB_RS01810: AMB_RS01810 - DNA helicase, at 390,009 to 391,580 _RS01810 AMB_RS01815: AMB_RS01815 - hypothetical protein, at 391,577 to 391,933 _RS01815 AMB_RS01820: AMB_RS01820 - DUF3987 domain-containing protein, at 391,933 to 394,206 _RS01820 AMB_RS01825: AMB_RS01825 - hypothetical protein, at 394,598 to 395,110 _RS01825 AMB_RS01830: AMB_RS01830 - hypothetical protein, at 395,107 to 395,304 _RS01830 Position (kb) 391 392 393 394 395Strain fitness (log2 ratio) -2 -1 0 1at 390.993 kb on + strand, within AMB_RS01810at 390.993 kb on + strand, within AMB_RS01810at 390.993 kb on + strand, within AMB_RS01810at 390.993 kb on + strand, within AMB_RS01810at 390.994 kb on - strand, within AMB_RS01810at 390.994 kb on - strand, within AMB_RS01810at 390.994 kb on - strand, within AMB_RS01810at 391.099 kb on + strand, within AMB_RS01810at 391.167 kb on - strand, within AMB_RS01810at 391.167 kb on - strand, within AMB_RS01810at 391.309 kb on - strand, within AMB_RS01810at 391.344 kb on - strand, within AMB_RS01810at 391.357 kb on - strand, within AMB_RS01810at 391.411 kb on - strand, within AMB_RS01810at 391.411 kb on - strand, within AMB_RS01810at 391.622 kb on - strand, within AMB_RS01815at 391.773 kb on - strand, within AMB_RS01815at 391.857 kb on - strand, within AMB_RS01815at 392.395 kb on + strand, within AMB_RS01820at 392.395 kb on + strand, within AMB_RS01820at 392.395 kb on + strand, within AMB_RS01820at 392.395 kb on + strand, within AMB_RS01820at 392.395 kb on + strand, within AMB_RS01820at 392.395 kb on + strand, within AMB_RS01820at 392.395 kb on + strand, within AMB_RS01820at 392.396 kb on - strand, within AMB_RS01820at 392.396 kb on - strand, within AMB_RS01820at 392.396 kb on - strand, within AMB_RS01820at 392.396 kb on - strand, within AMB_RS01820at 392.396 kb on - strand, within AMB_RS01820at 392.396 kb on - strand, within AMB_RS01820at 392.448 kb on - strand, within AMB_RS01820at 392.626 kb on + strand, within AMB_RS01820at 392.791 kb on + strand, within AMB_RS01820at 392.791 kb on + strand, within AMB_RS01820at 392.791 kb on + strand, within AMB_RS01820at 392.983 kb on + strand, within AMB_RS01820at 392.983 kb on + strand, within AMB_RS01820at 392.983 kb on + strand, within AMB_RS01820at 392.983 kb on + strand, within AMB_RS01820at 392.984 kb on - strand, within AMB_RS01820at 392.984 kb on - strand, within AMB_RS01820at 392.984 kb on - strand, within AMB_RS01820at 392.984 kb on - strand, within AMB_RS01820at 392.984 kb on - strand, within AMB_RS01820at 392.984 kb on - strand, within AMB_RS01820at 392.984 kb on - strand, within AMB_RS01820at 392.984 kb on - strand, within AMB_RS01820at 392.984 kb on - strand, within AMB_RS01820at 393.071 kb on - strand, within AMB_RS01820at 393.103 kb on + strand, within AMB_RS01820at 393.104 kb on - strand, within AMB_RS01820at 393.104 kb on - strand, within AMB_RS01820at 393.104 kb on - strand, within AMB_RS01820at 393.104 kb on - strand, within AMB_RS01820at 393.193 kb on + strand, within AMB_RS01820at 393.364 kb on + strand, within AMB_RS01820at 393.364 kb on + strand, within AMB_RS01820at 393.364 kb on + strand, within AMB_RS01820at 393.365 kb on - strand, within AMB_RS01820at 393.365 kb on - strand, within AMB_RS01820at 393.365 kb on - strand, within AMB_RS01820at 393.365 kb on - strand, within AMB_RS01820at 393.365 kb on - strand, within AMB_RS01820at 393.365 kb on - strand, within AMB_RS01820at 393.365 kb on - strand, within AMB_RS01820at 393.365 kb on - strand, within AMB_RS01820at 393.366 kb on + strand, within AMB_RS01820at 393.366 kb on + strand, within AMB_RS01820at 393.366 kb on + strand, within AMB_RS01820at 393.366 kb on + strand, within AMB_RS01820at 393.366 kb on + strand, within AMB_RS01820at 393.366 kb on + strand, within AMB_RS01820at 393.366 kb on + strand, within AMB_RS01820at 393.366 kb on + strand, within AMB_RS01820at 393.366 kb on + strand, within AMB_RS01820at 393.366 kb on + strand, within AMB_RS01820at 393.366 kb on + strand, within AMB_RS01820at 393.367 kb on - strand, within AMB_RS01820at 393.367 kb on - strand, within AMB_RS01820at 393.367 kb on - strand, within AMB_RS01820at 393.367 kb on - strand, within AMB_RS01820at 393.400 kb on + strand, within AMB_RS01820at 393.460 kb on + strand, within AMB_RS01820at 393.461 kb on - strand, within AMB_RS01820at 393.765 kb on + strand, within AMB_RS01820at 394.173 kb on - strandat 394.271 kb on + strandat 394.272 kb on - strandat 394.272 kb on - strandat 394.396 kb on + strandat 394.396 kb on + strandat 394.452 kb on + strandat 394.452 kb on + strandat 394.453 kb on - strandat 394.512 kb on + strandat 394.653 kb on + strand, within AMB_RS01825at 394.654 kb on - strand, within AMB_RS01825at 394.654 kb on - strand, within AMB_RS01825at 394.769 kb on + strand, within AMB_RS01825at 394.770 kb on - strand, within AMB_RS01825at 394.832 kb on + strand, within AMB_RS01825at 394.832 kb on + strand, within AMB_RS01825at 394.832 kb on + strand, within AMB_RS01825at 394.833 kb on - strand, within AMB_RS01825at 394.833 kb on - strand, within AMB_RS01825at 394.934 kb on + strand, within AMB_RS01825

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_2
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390,993 + AMB_RS01810 0.63 -1.9
390,993 + AMB_RS01810 0.63 -1.2
390,993 + AMB_RS01810 0.63 -0.1
390,993 + AMB_RS01810 0.63 -0.1
390,994 - AMB_RS01810 0.63 -0.1
390,994 - AMB_RS01810 0.63 +0.2
390,994 - AMB_RS01810 0.63 -0.8
391,099 + AMB_RS01810 0.69 -0.2
391,167 - AMB_RS01810 0.74 -1.0
391,167 - AMB_RS01810 0.74 -0.3
391,309 - AMB_RS01810 0.83 +1.2
391,344 - AMB_RS01810 0.85 +0.3
391,357 - AMB_RS01810 0.86 +0.3
391,411 - AMB_RS01810 0.89 -0.1
391,411 - AMB_RS01810 0.89 -0.5
391,622 - AMB_RS01815 0.13 +1.3
391,773 - AMB_RS01815 0.55 -0.5
391,857 - AMB_RS01815 0.78 +0.3
392,395 + AMB_RS01820 0.20 +0.3
392,395 + AMB_RS01820 0.20 +0.3
392,395 + AMB_RS01820 0.20 -0.3
392,395 + AMB_RS01820 0.20 -0.7
392,395 + AMB_RS01820 0.20 +0.1
392,395 + AMB_RS01820 0.20 -1.8
392,395 + AMB_RS01820 0.20 +0.9
392,396 - AMB_RS01820 0.20 -0.3
392,396 - AMB_RS01820 0.20 +0.2
392,396 - AMB_RS01820 0.20 +0.3
392,396 - AMB_RS01820 0.20 -0.8
392,396 - AMB_RS01820 0.20 -1.3
392,396 - AMB_RS01820 0.20 -1.9
392,448 - AMB_RS01820 0.23 -0.8
392,626 + AMB_RS01820 0.30 -0.9
392,791 + AMB_RS01820 0.38 -0.3
392,791 + AMB_RS01820 0.38 -0.3
392,791 + AMB_RS01820 0.38 -0.2
392,983 + AMB_RS01820 0.46 -0.0
392,983 + AMB_RS01820 0.46 -0.2
392,983 + AMB_RS01820 0.46 -0.2
392,983 + AMB_RS01820 0.46 -0.1
392,984 - AMB_RS01820 0.46 -0.5
392,984 - AMB_RS01820 0.46 -0.6
392,984 - AMB_RS01820 0.46 +0.3
392,984 - AMB_RS01820 0.46 -0.3
392,984 - AMB_RS01820 0.46 +0.0
392,984 - AMB_RS01820 0.46 +0.2
392,984 - AMB_RS01820 0.46 +0.1
392,984 - AMB_RS01820 0.46 -0.5
392,984 - AMB_RS01820 0.46 +0.1
393,071 - AMB_RS01820 0.50 -0.3
393,103 + AMB_RS01820 0.51 +0.1
393,104 - AMB_RS01820 0.51 +1.1
393,104 - AMB_RS01820 0.51 +0.1
393,104 - AMB_RS01820 0.51 -0.2
393,104 - AMB_RS01820 0.51 -0.3
393,193 + AMB_RS01820 0.55 -0.2
393,364 + AMB_RS01820 0.63 +1.3
393,364 + AMB_RS01820 0.63 -0.2
393,364 + AMB_RS01820 0.63 -0.3
393,365 - AMB_RS01820 0.63 -2.2
393,365 - AMB_RS01820 0.63 +0.2
393,365 - AMB_RS01820 0.63 -1.3
393,365 - AMB_RS01820 0.63 +0.4
393,365 - AMB_RS01820 0.63 -0.2
393,365 - AMB_RS01820 0.63 -0.5
393,365 - AMB_RS01820 0.63 -1.2
393,365 - AMB_RS01820 0.63 -0.4
393,366 + AMB_RS01820 0.63 -0.2
393,366 + AMB_RS01820 0.63 -1.4
393,366 + AMB_RS01820 0.63 -0.7
393,366 + AMB_RS01820 0.63 -0.3
393,366 + AMB_RS01820 0.63 -0.1
393,366 + AMB_RS01820 0.63 -0.3
393,366 + AMB_RS01820 0.63 -0.5
393,366 + AMB_RS01820 0.63 -2.2
393,366 + AMB_RS01820 0.63 -0.3
393,366 + AMB_RS01820 0.63 -0.8
393,366 + AMB_RS01820 0.63 +1.1
393,367 - AMB_RS01820 0.63 -0.4
393,367 - AMB_RS01820 0.63 -0.9
393,367 - AMB_RS01820 0.63 +0.1
393,367 - AMB_RS01820 0.63 +0.1
393,400 + AMB_RS01820 0.65 +0.7
393,460 + AMB_RS01820 0.67 -2.3
393,461 - AMB_RS01820 0.67 -1.0
393,765 + AMB_RS01820 0.81 -0.2
394,173 - +0.2
394,271 + -0.5
394,272 - -0.7
394,272 - +0.8
394,396 + +0.4
394,396 + -0.9
394,452 + +0.2
394,452 + +0.6
394,453 - -0.7
394,512 + -0.3
394,653 + AMB_RS01825 0.11 +0.0
394,654 - AMB_RS01825 0.11 +0.1
394,654 - AMB_RS01825 0.11 -0.3
394,769 + AMB_RS01825 0.33 -0.4
394,770 - AMB_RS01825 0.34 -0.0
394,832 + AMB_RS01825 0.46 +0.5
394,832 + AMB_RS01825 0.46 -0.1
394,832 + AMB_RS01825 0.46 +1.7
394,833 - AMB_RS01825 0.46 -0.4
394,833 - AMB_RS01825 0.46 -0.9
394,934 + AMB_RS01825 0.65 +1.1

Or see this region's nucleotide sequence