Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01335

Experiment: 150_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01330 and AMB_RS01335 are separated by 157 nucleotidesAMB_RS01335 and AMB_RS01340 are separated by 1 nucleotidesAMB_RS01340 and AMB_RS01345 are separated by 51 nucleotides AMB_RS01330: AMB_RS01330 - glycosyltransferase family 39 protein, at 292,927 to 294,570 _RS01330 AMB_RS01335: AMB_RS01335 - methyl-accepting chemotaxis protein, at 294,728 to 296,539 _RS01335 AMB_RS01340: AMB_RS01340 - hypothetical protein, at 296,541 to 297,038 _RS01340 AMB_RS01345: AMB_RS01345 - glycosyltransferase family 1 protein, at 297,090 to 298,133 _RS01345 Position (kb) 294 295 296 297Strain fitness (log2 ratio) -2 -1 0 1 2at 293.756 kb on + strand, within AMB_RS01330at 293.756 kb on + strand, within AMB_RS01330at 293.756 kb on + strand, within AMB_RS01330at 293.756 kb on + strand, within AMB_RS01330at 293.756 kb on + strand, within AMB_RS01330at 293.756 kb on + strand, within AMB_RS01330at 293.756 kb on + strand, within AMB_RS01330at 293.756 kb on + strand, within AMB_RS01330at 293.970 kb on + strand, within AMB_RS01330at 294.092 kb on + strand, within AMB_RS01330at 294.236 kb on + strand, within AMB_RS01330at 294.237 kb on - strand, within AMB_RS01330at 294.416 kb on + strandat 294.416 kb on + strandat 294.416 kb on + strandat 294.416 kb on + strandat 294.417 kb on - strandat 294.506 kb on + strandat 294.754 kb on + strandat 294.754 kb on + strandat 294.840 kb on + strandat 294.840 kb on + strandat 294.841 kb on - strandat 294.953 kb on + strand, within AMB_RS01335at 294.954 kb on - strand, within AMB_RS01335at 294.954 kb on - strand, within AMB_RS01335at 294.954 kb on - strand, within AMB_RS01335at 295.217 kb on + strand, within AMB_RS01335at 295.218 kb on - strand, within AMB_RS01335at 295.218 kb on - strand, within AMB_RS01335at 295.218 kb on - strand, within AMB_RS01335at 295.218 kb on - strand, within AMB_RS01335at 295.218 kb on - strand, within AMB_RS01335at 295.218 kb on - strand, within AMB_RS01335at 296.302 kb on + strand, within AMB_RS01335at 296.543 kb on - strandat 296.611 kb on + strand, within AMB_RS01340at 296.612 kb on - strand, within AMB_RS01340at 296.612 kb on - strand, within AMB_RS01340at 296.680 kb on + strand, within AMB_RS01340at 296.680 kb on + strand, within AMB_RS01340at 296.680 kb on + strand, within AMB_RS01340at 296.680 kb on + strand, within AMB_RS01340at 296.680 kb on + strand, within AMB_RS01340at 296.681 kb on - strand, within AMB_RS01340at 296.681 kb on - strand, within AMB_RS01340at 296.681 kb on - strand, within AMB_RS01340at 296.681 kb on - strand, within AMB_RS01340at 296.681 kb on - strand, within AMB_RS01340at 296.681 kb on - strand, within AMB_RS01340at 296.681 kb on - strand, within AMB_RS01340at 296.681 kb on - strand, within AMB_RS01340at 296.801 kb on + strand, within AMB_RS01340at 296.801 kb on + strand, within AMB_RS01340at 296.802 kb on - strand, within AMB_RS01340at 296.802 kb on - strand, within AMB_RS01340at 296.863 kb on + strand, within AMB_RS01340at 296.863 kb on + strand, within AMB_RS01340at 296.864 kb on - strand, within AMB_RS01340at 296.864 kb on - strand, within AMB_RS01340at 296.864 kb on - strand, within AMB_RS01340at 296.864 kb on - strand, within AMB_RS01340at 296.864 kb on - strand, within AMB_RS01340at 296.914 kb on + strand, within AMB_RS01340at 296.914 kb on + strand, within AMB_RS01340at 296.915 kb on - strand, within AMB_RS01340at 296.956 kb on + strand, within AMB_RS01340at 296.957 kb on - strand, within AMB_RS01340at 297.086 kb on + strandat 297.087 kb on - strandat 297.132 kb on + strandat 297.133 kb on - strandat 297.302 kb on - strand, within AMB_RS01345at 297.398 kb on - strand, within AMB_RS01345

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_2
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293,756 + AMB_RS01330 0.50 -1.5
293,756 + AMB_RS01330 0.50 -0.9
293,756 + AMB_RS01330 0.50 -1.9
293,756 + AMB_RS01330 0.50 -0.9
293,756 + AMB_RS01330 0.50 -1.5
293,756 + AMB_RS01330 0.50 +1.7
293,756 + AMB_RS01330 0.50 +0.4
293,756 + AMB_RS01330 0.50 +0.1
293,970 + AMB_RS01330 0.63 -2.2
294,092 + AMB_RS01330 0.71 +0.1
294,236 + AMB_RS01330 0.80 -0.9
294,237 - AMB_RS01330 0.80 +0.7
294,416 + +0.1
294,416 + +0.1
294,416 + -1.1
294,416 + -1.5
294,417 - -1.5
294,506 + -1.5
294,754 + -0.6
294,754 + -0.2
294,840 + -0.9
294,840 + +0.4
294,841 - +2.4
294,953 + AMB_RS01335 0.12 -1.6
294,954 - AMB_RS01335 0.12 -0.2
294,954 - AMB_RS01335 0.12 -0.6
294,954 - AMB_RS01335 0.12 -0.3
295,217 + AMB_RS01335 0.27 -0.4
295,218 - AMB_RS01335 0.27 -0.4
295,218 - AMB_RS01335 0.27 -0.6
295,218 - AMB_RS01335 0.27 +0.0
295,218 - AMB_RS01335 0.27 -0.3
295,218 - AMB_RS01335 0.27 +0.1
295,218 - AMB_RS01335 0.27 +0.1
296,302 + AMB_RS01335 0.87 +0.2
296,543 - -0.6
296,611 + AMB_RS01340 0.14 -0.7
296,612 - AMB_RS01340 0.14 -0.2
296,612 - AMB_RS01340 0.14 +0.2
296,680 + AMB_RS01340 0.28 +0.1
296,680 + AMB_RS01340 0.28 +0.4
296,680 + AMB_RS01340 0.28 -1.1
296,680 + AMB_RS01340 0.28 +0.5
296,680 + AMB_RS01340 0.28 -0.0
296,681 - AMB_RS01340 0.28 -1.6
296,681 - AMB_RS01340 0.28 -0.1
296,681 - AMB_RS01340 0.28 +0.7
296,681 - AMB_RS01340 0.28 +0.7
296,681 - AMB_RS01340 0.28 +0.1
296,681 - AMB_RS01340 0.28 +0.9
296,681 - AMB_RS01340 0.28 +0.1
296,681 - AMB_RS01340 0.28 -0.9
296,801 + AMB_RS01340 0.52 -0.3
296,801 + AMB_RS01340 0.52 -0.3
296,802 - AMB_RS01340 0.52 -0.9
296,802 - AMB_RS01340 0.52 +1.7
296,863 + AMB_RS01340 0.65 +1.4
296,863 + AMB_RS01340 0.65 -1.0
296,864 - AMB_RS01340 0.65 -0.6
296,864 - AMB_RS01340 0.65 -0.2
296,864 - AMB_RS01340 0.65 +0.6
296,864 - AMB_RS01340 0.65 +0.0
296,864 - AMB_RS01340 0.65 +0.9
296,914 + AMB_RS01340 0.75 +0.5
296,914 + AMB_RS01340 0.75 -0.0
296,915 - AMB_RS01340 0.75 +0.4
296,956 + AMB_RS01340 0.83 -0.2
296,957 - AMB_RS01340 0.84 -1.0
297,086 + -0.4
297,087 - +0.1
297,132 + -0.8
297,133 - -0.5
297,302 - AMB_RS01345 0.20 +0.8
297,398 - AMB_RS01345 0.30 +0.9

Or see this region's nucleotide sequence