Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00820

Experiment: 150_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00815 and AMB_RS00820 overlap by 1 nucleotidesAMB_RS00820 and AMB_RS00825 are separated by 36 nucleotidesAMB_RS00825 and AMB_RS00830 overlap by 1 nucleotides AMB_RS00815: AMB_RS00815 - hypothetical protein, at 183,644 to 184,747 _RS00815 AMB_RS00820: AMB_RS00820 - GDP-L-fucose synthase, at 184,747 to 185,691 _RS00820 AMB_RS00825: AMB_RS00825 - NAD(+) kinase, at 185,728 to 186,495 _RS00825 AMB_RS00830: AMB_RS00830 - ammonia monooxygenase, at 186,495 to 187,541 _RS00830 Position (kb) 184 185 186Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.762 kb on - strand, within AMB_RS00815at 183.762 kb on - strand, within AMB_RS00815at 184.133 kb on + strand, within AMB_RS00815at 184.133 kb on + strand, within AMB_RS00815at 184.133 kb on + strand, within AMB_RS00815at 184.133 kb on + strand, within AMB_RS00815at 184.133 kb on + strand, within AMB_RS00815at 184.134 kb on - strand, within AMB_RS00815at 184.134 kb on - strand, within AMB_RS00815at 184.134 kb on - strand, within AMB_RS00815at 184.338 kb on - strand, within AMB_RS00815at 184.346 kb on + strand, within AMB_RS00815at 184.346 kb on + strand, within AMB_RS00815at 184.346 kb on + strand, within AMB_RS00815at 184.346 kb on + strand, within AMB_RS00815at 184.346 kb on + strand, within AMB_RS00815at 184.346 kb on + strand, within AMB_RS00815at 184.347 kb on - strand, within AMB_RS00815at 184.410 kb on - strand, within AMB_RS00815at 184.424 kb on + strand, within AMB_RS00815at 184.424 kb on + strand, within AMB_RS00815at 184.424 kb on + strand, within AMB_RS00815at 184.424 kb on + strand, within AMB_RS00815at 184.425 kb on - strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.455 kb on - strand, within AMB_RS00815at 184.455 kb on - strand, within AMB_RS00815at 184.455 kb on - strand, within AMB_RS00815at 184.455 kb on - strand, within AMB_RS00815at 184.455 kb on - strand, within AMB_RS00815at 184.455 kb on - strand, within AMB_RS00815at 184.456 kb on + strand, within AMB_RS00815at 184.715 kb on + strandat 184.715 kb on + strandat 184.715 kb on + strandat 184.715 kb on + strandat 184.715 kb on + strandat 184.715 kb on + strandat 184.715 kb on + strandat 184.715 kb on + strandat 184.715 kb on + strandat 184.716 kb on - strandat 184.716 kb on - strandat 184.716 kb on - strandat 184.716 kb on - strandat 184.716 kb on - strandat 184.716 kb on - strandat 184.716 kb on - strandat 184.716 kb on - strandat 184.716 kb on - strandat 184.716 kb on - strandat 184.719 kb on + strandat 184.719 kb on + strandat 184.720 kb on - strandat 184.720 kb on - strandat 184.720 kb on - strandat 184.720 kb on - strandat 184.720 kb on - strandat 184.759 kb on + strandat 184.759 kb on + strandat 184.759 kb on + strandat 185.092 kb on + strand, within AMB_RS00820at 185.093 kb on - strand, within AMB_RS00820at 185.103 kb on - strand, within AMB_RS00820at 185.278 kb on + strand, within AMB_RS00820at 185.278 kb on + strand, within AMB_RS00820at 185.278 kb on + strand, within AMB_RS00820at 185.278 kb on + strand, within AMB_RS00820at 185.279 kb on - strand, within AMB_RS00820at 185.279 kb on - strand, within AMB_RS00820at 185.279 kb on - strand, within AMB_RS00820at 185.668 kb on + strandat 185.668 kb on + strandat 185.669 kb on - strandat 185.689 kb on + strandat 185.689 kb on + strandat 185.689 kb on + strandat 185.689 kb on + strandat 185.689 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_2
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183,761 + AMB_RS00815 0.11 -0.5
183,761 + AMB_RS00815 0.11 -0.9
183,761 + AMB_RS00815 0.11 -0.7
183,761 + AMB_RS00815 0.11 -1.1
183,761 + AMB_RS00815 0.11 -1.4
183,761 + AMB_RS00815 0.11 -0.8
183,761 + AMB_RS00815 0.11 +0.6
183,761 + AMB_RS00815 0.11 -1.2
183,762 - AMB_RS00815 0.11 -1.5
183,762 - AMB_RS00815 0.11 -2.7
184,133 + AMB_RS00815 0.44 -1.8
184,133 + AMB_RS00815 0.44 -0.2
184,133 + AMB_RS00815 0.44 -0.9
184,133 + AMB_RS00815 0.44 -1.3
184,133 + AMB_RS00815 0.44 -1.4
184,134 - AMB_RS00815 0.44 -1.0
184,134 - AMB_RS00815 0.44 -1.5
184,134 - AMB_RS00815 0.44 -1.9
184,338 - AMB_RS00815 0.63 -1.1
184,346 + AMB_RS00815 0.64 +0.1
184,346 + AMB_RS00815 0.64 +0.7
184,346 + AMB_RS00815 0.64 +0.1
184,346 + AMB_RS00815 0.64 +1.1
184,346 + AMB_RS00815 0.64 -1.7
184,346 + AMB_RS00815 0.64 -0.7
184,347 - AMB_RS00815 0.64 -1.7
184,410 - AMB_RS00815 0.69 -1.5
184,424 + AMB_RS00815 0.71 -2.6
184,424 + AMB_RS00815 0.71 -1.5
184,424 + AMB_RS00815 0.71 -0.9
184,424 + AMB_RS00815 0.71 -0.5
184,425 - AMB_RS00815 0.71 +0.4
184,454 + AMB_RS00815 0.73 -1.8
184,454 + AMB_RS00815 0.73 -0.4
184,454 + AMB_RS00815 0.73 +0.0
184,454 + AMB_RS00815 0.73 -3.5
184,454 + AMB_RS00815 0.73 -0.9
184,454 + AMB_RS00815 0.73 -2.5
184,454 + AMB_RS00815 0.73 -1.9
184,454 + AMB_RS00815 0.73 -0.9
184,454 + AMB_RS00815 0.73 -2.0
184,454 + AMB_RS00815 0.73 -2.1
184,454 + AMB_RS00815 0.73 -2.6
184,454 + AMB_RS00815 0.73 -2.5
184,454 + AMB_RS00815 0.73 -1.7
184,454 + AMB_RS00815 0.73 +1.4
184,454 + AMB_RS00815 0.73 -1.2
184,454 + AMB_RS00815 0.73 -0.1
184,455 - AMB_RS00815 0.73 +0.1
184,455 - AMB_RS00815 0.73 -2.1
184,455 - AMB_RS00815 0.73 -2.2
184,455 - AMB_RS00815 0.73 -1.2
184,455 - AMB_RS00815 0.73 -0.9
184,455 - AMB_RS00815 0.73 -1.9
184,456 + AMB_RS00815 0.74 -1.1
184,715 + -1.9
184,715 + -0.8
184,715 + -1.7
184,715 + -1.2
184,715 + +0.6
184,715 + +2.1
184,715 + +0.7
184,715 + -1.8
184,715 + -1.3
184,716 - -1.5
184,716 - -1.5
184,716 - +0.1
184,716 - -0.5
184,716 - -2.5
184,716 - -0.4
184,716 - -0.1
184,716 - +0.1
184,716 - -2.1
184,716 - -1.4
184,719 + -1.0
184,719 + -0.5
184,720 - -1.5
184,720 - -0.9
184,720 - +0.1
184,720 - -1.2
184,720 - -2.9
184,759 + -0.4
184,759 + +0.0
184,759 + -1.5
185,092 + AMB_RS00820 0.37 -1.2
185,093 - AMB_RS00820 0.37 -0.8
185,103 - AMB_RS00820 0.38 -0.6
185,278 + AMB_RS00820 0.56 -2.0
185,278 + AMB_RS00820 0.56 +0.1
185,278 + AMB_RS00820 0.56 +0.7
185,278 + AMB_RS00820 0.56 +0.3
185,279 - AMB_RS00820 0.56 +0.1
185,279 - AMB_RS00820 0.56 -2.5
185,279 - AMB_RS00820 0.56 -0.9
185,668 + +0.4
185,668 + -1.1
185,669 - +0.1
185,689 + -2.5
185,689 + -0.8
185,689 + -0.5
185,689 + -0.1
185,689 + -0.2

Or see this region's nucleotide sequence