Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS19150 and ABIE41_RS19155 are separated by 197 nucleotides ABIE41_RS19155 and ABIE41_RS19160 are separated by 96 nucleotides ABIE41_RS19160 and ABIE41_RS19165 are separated by 63 nucleotides
ABIE41_RS19150: ABIE41_RS19150 - TRAP transporter substrate-binding protein DctP, at 3,951,095 to 3,952,084
_RS19150
ABIE41_RS19155: ABIE41_RS19155 - GntR family transcriptional regulator, at 3,952,282 to 3,952,953
_RS19155
ABIE41_RS19160: ABIE41_RS19160 - class II fructose-bisphosphatase, at 3,953,050 to 3,954,048
_RS19160
ABIE41_RS19165: ABIE41_RS19165 - homoserine dehydrogenase, at 3,954,112 to 3,955,458
_RS19165
Position (kb)
3953
3954
3955 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3952.123 kb on - strand at 3952.163 kb on + strand at 3952.408 kb on + strand, within ABIE41_RS19155 at 3952.409 kb on - strand, within ABIE41_RS19155 at 3952.696 kb on + strand, within ABIE41_RS19155 at 3952.696 kb on + strand, within ABIE41_RS19155 at 3952.696 kb on + strand, within ABIE41_RS19155 at 3952.697 kb on - strand, within ABIE41_RS19155 at 3952.697 kb on - strand, within ABIE41_RS19155 at 3952.697 kb on - strand, within ABIE41_RS19155 at 3952.697 kb on - strand, within ABIE41_RS19155 at 3952.771 kb on + strand, within ABIE41_RS19155 at 3952.771 kb on + strand, within ABIE41_RS19155 at 3952.773 kb on - strand, within ABIE41_RS19155 at 3952.780 kb on + strand, within ABIE41_RS19155 at 3952.780 kb on + strand, within ABIE41_RS19155 at 3952.780 kb on + strand, within ABIE41_RS19155 at 3952.780 kb on + strand, within ABIE41_RS19155 at 3952.780 kb on + strand, within ABIE41_RS19155 at 3952.781 kb on - strand, within ABIE41_RS19155 at 3952.781 kb on - strand, within ABIE41_RS19155 at 3952.789 kb on + strand, within ABIE41_RS19155 at 3954.114 kb on - strand at 3954.213 kb on - strand at 3954.213 kb on - strand at 3954.213 kb on - strand at 3954.384 kb on - strand, within ABIE41_RS19165 at 3954.384 kb on - strand, within ABIE41_RS19165 at 3954.384 kb on - strand, within ABIE41_RS19165 at 3954.384 kb on - strand, within ABIE41_RS19165 at 3954.939 kb on - strand, within ABIE41_RS19165 at 3954.939 kb on - strand, within ABIE41_RS19165 at 3954.939 kb on - strand, within ABIE41_RS19165
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 3,952,123 - -0.6 3,952,163 + -0.9 3,952,408 + ABIE41_RS19155 0.19 -0.5 3,952,409 - ABIE41_RS19155 0.19 +1.9 3,952,696 + ABIE41_RS19155 0.62 +0.1 3,952,696 + ABIE41_RS19155 0.62 -1.3 3,952,696 + ABIE41_RS19155 0.62 +0.8 3,952,697 - ABIE41_RS19155 0.62 +1.0 3,952,697 - ABIE41_RS19155 0.62 -0.0 3,952,697 - ABIE41_RS19155 0.62 -0.9 3,952,697 - ABIE41_RS19155 0.62 +0.5 3,952,771 + ABIE41_RS19155 0.73 +0.3 3,952,771 + ABIE41_RS19155 0.73 -1.9 3,952,773 - ABIE41_RS19155 0.73 -1.3 3,952,780 + ABIE41_RS19155 0.74 +0.1 3,952,780 + ABIE41_RS19155 0.74 +0.5 3,952,780 + ABIE41_RS19155 0.74 -0.3 3,952,780 + ABIE41_RS19155 0.74 -0.8 3,952,780 + ABIE41_RS19155 0.74 -0.3 3,952,781 - ABIE41_RS19155 0.74 +1.9 3,952,781 - ABIE41_RS19155 0.74 +1.7 3,952,789 + ABIE41_RS19155 0.75 +0.8 3,954,114 - +0.4 3,954,213 - -0.8 3,954,213 - -0.5 3,954,213 - -1.2 3,954,384 - ABIE41_RS19165 0.20 +0.4 3,954,384 - ABIE41_RS19165 0.20 +1.9 3,954,384 - ABIE41_RS19165 0.20 +1.2 3,954,384 - ABIE41_RS19165 0.20 -1.1 3,954,939 - ABIE41_RS19165 0.61 -1.6 3,954,939 - ABIE41_RS19165 0.61 -1.3 3,954,939 - ABIE41_RS19165 0.61 -1.9
Or see this region's nucleotide sequence