Strain Fitness in Bosea sp. OAE506 around ABIE41_RS15825

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS15815 and ABIE41_RS15820 are separated by 162 nucleotidesABIE41_RS15820 and ABIE41_RS15825 are separated by 117 nucleotidesABIE41_RS15825 and ABIE41_RS15830 are separated by 12 nucleotides ABIE41_RS15815: ABIE41_RS15815 - ATP-dependent DNA helicase RecG, at 3,240,846 to 3,242,948 _RS15815 ABIE41_RS15820: ABIE41_RS15820 - succinate dehydrogenase assembly factor 2, at 3,243,111 to 3,243,407 _RS15820 ABIE41_RS15825: ABIE41_RS15825 - transcription-repair coupling factor, at 3,243,525 to 3,247,073 _RS15825 ABIE41_RS15830: ABIE41_RS15830 - AMP-binding protein, at 3,247,086 to 3,248,102 _RS15830 Position (kb) 3243 3244 3245 3246 3247 3248Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3243.023 kb on + strandat 3243.024 kb on - strandat 3243.024 kb on - strandat 3243.024 kb on - strandat 3243.024 kb on - strandat 3243.024 kb on - strandat 3243.024 kb on - strandat 3243.025 kb on + strandat 3243.025 kb on + strandat 3243.025 kb on + strandat 3243.026 kb on - strandat 3243.026 kb on - strandat 3243.026 kb on - strandat 3243.027 kb on + strandat 3243.027 kb on + strandat 3243.028 kb on - strandat 3244.035 kb on + strand, within ABIE41_RS15825at 3244.036 kb on - strand, within ABIE41_RS15825at 3244.278 kb on + strand, within ABIE41_RS15825at 3244.278 kb on + strand, within ABIE41_RS15825at 3244.278 kb on + strand, within ABIE41_RS15825at 3244.279 kb on - strand, within ABIE41_RS15825at 3244.279 kb on - strand, within ABIE41_RS15825at 3244.279 kb on - strand, within ABIE41_RS15825at 3244.279 kb on - strand, within ABIE41_RS15825at 3244.279 kb on - strand, within ABIE41_RS15825at 3244.320 kb on + strand, within ABIE41_RS15825at 3244.321 kb on - strand, within ABIE41_RS15825at 3244.321 kb on - strand, within ABIE41_RS15825at 3244.407 kb on + strand, within ABIE41_RS15825at 3244.408 kb on - strand, within ABIE41_RS15825at 3244.485 kb on + strand, within ABIE41_RS15825at 3244.486 kb on - strand, within ABIE41_RS15825at 3244.488 kb on + strand, within ABIE41_RS15825at 3244.488 kb on + strand, within ABIE41_RS15825at 3244.488 kb on + strand, within ABIE41_RS15825at 3244.489 kb on - strand, within ABIE41_RS15825at 3244.539 kb on + strand, within ABIE41_RS15825at 3244.566 kb on + strand, within ABIE41_RS15825at 3244.566 kb on + strand, within ABIE41_RS15825at 3244.567 kb on - strand, within ABIE41_RS15825at 3245.388 kb on + strand, within ABIE41_RS15825at 3245.595 kb on - strand, within ABIE41_RS15825at 3245.616 kb on + strand, within ABIE41_RS15825at 3245.870 kb on + strand, within ABIE41_RS15825at 3245.870 kb on + strand, within ABIE41_RS15825at 3245.870 kb on + strand, within ABIE41_RS15825at 3246.060 kb on + strand, within ABIE41_RS15825at 3246.061 kb on - strand, within ABIE41_RS15825at 3246.193 kb on - strand, within ABIE41_RS15825at 3246.193 kb on - strand, within ABIE41_RS15825at 3246.204 kb on + strand, within ABIE41_RS15825at 3246.204 kb on + strand, within ABIE41_RS15825at 3246.204 kb on + strand, within ABIE41_RS15825at 3246.205 kb on - strand, within ABIE41_RS15825at 3246.205 kb on - strand, within ABIE41_RS15825at 3246.264 kb on - strand, within ABIE41_RS15825at 3246.310 kb on - strand, within ABIE41_RS15825at 3246.518 kb on + strand, within ABIE41_RS15825at 3246.519 kb on - strand, within ABIE41_RS15825at 3246.543 kb on + strand, within ABIE41_RS15825at 3246.543 kb on + strand, within ABIE41_RS15825at 3246.660 kb on + strand, within ABIE41_RS15825at 3246.660 kb on + strand, within ABIE41_RS15825at 3246.661 kb on - strand, within ABIE41_RS15825at 3246.693 kb on + strand, within ABIE41_RS15825at 3246.921 kb on + strandat 3246.921 kb on + strandat 3246.922 kb on - strandat 3246.922 kb on - strandat 3246.922 kb on - strandat 3246.922 kb on - strandat 3247.610 kb on + strand, within ABIE41_RS15830at 3247.652 kb on + strand, within ABIE41_RS15830

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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3,243,023 + -0.5
3,243,024 - +0.2
3,243,024 - -0.5
3,243,024 - +0.3
3,243,024 - -1.5
3,243,024 - +0.1
3,243,024 - +0.5
3,243,025 + -0.9
3,243,025 + -0.7
3,243,025 + -0.7
3,243,026 - +1.6
3,243,026 - +3.2
3,243,026 - -0.6
3,243,027 + -0.9
3,243,027 + -0.9
3,243,028 - -0.6
3,244,035 + ABIE41_RS15825 0.14 -0.4
3,244,036 - ABIE41_RS15825 0.14 -0.0
3,244,278 + ABIE41_RS15825 0.21 -0.7
3,244,278 + ABIE41_RS15825 0.21 +1.2
3,244,278 + ABIE41_RS15825 0.21 +0.3
3,244,279 - ABIE41_RS15825 0.21 +1.7
3,244,279 - ABIE41_RS15825 0.21 -0.2
3,244,279 - ABIE41_RS15825 0.21 -0.1
3,244,279 - ABIE41_RS15825 0.21 -0.3
3,244,279 - ABIE41_RS15825 0.21 -0.7
3,244,320 + ABIE41_RS15825 0.22 +0.0
3,244,321 - ABIE41_RS15825 0.22 +0.1
3,244,321 - ABIE41_RS15825 0.22 -1.3
3,244,407 + ABIE41_RS15825 0.25 +0.3
3,244,408 - ABIE41_RS15825 0.25 +0.8
3,244,485 + ABIE41_RS15825 0.27 +1.5
3,244,486 - ABIE41_RS15825 0.27 -1.1
3,244,488 + ABIE41_RS15825 0.27 -0.8
3,244,488 + ABIE41_RS15825 0.27 -0.3
3,244,488 + ABIE41_RS15825 0.27 +0.1
3,244,489 - ABIE41_RS15825 0.27 -1.0
3,244,539 + ABIE41_RS15825 0.29 +1.7
3,244,566 + ABIE41_RS15825 0.29 -0.0
3,244,566 + ABIE41_RS15825 0.29 +0.0
3,244,567 - ABIE41_RS15825 0.29 -0.1
3,245,388 + ABIE41_RS15825 0.52 +1.3
3,245,595 - ABIE41_RS15825 0.58 -0.3
3,245,616 + ABIE41_RS15825 0.59 -3.9
3,245,870 + ABIE41_RS15825 0.66 +1.3
3,245,870 + ABIE41_RS15825 0.66 +0.6
3,245,870 + ABIE41_RS15825 0.66 +0.3
3,246,060 + ABIE41_RS15825 0.71 -1.0
3,246,061 - ABIE41_RS15825 0.71 +1.6
3,246,193 - ABIE41_RS15825 0.75 -0.8
3,246,193 - ABIE41_RS15825 0.75 -0.1
3,246,204 + ABIE41_RS15825 0.75 -0.5
3,246,204 + ABIE41_RS15825 0.75 +0.4
3,246,204 + ABIE41_RS15825 0.75 -1.1
3,246,205 - ABIE41_RS15825 0.76 -1.0
3,246,205 - ABIE41_RS15825 0.76 -1.1
3,246,264 - ABIE41_RS15825 0.77 -2.3
3,246,310 - ABIE41_RS15825 0.78 -0.8
3,246,518 + ABIE41_RS15825 0.84 -0.9
3,246,519 - ABIE41_RS15825 0.84 +0.1
3,246,543 + ABIE41_RS15825 0.85 -0.1
3,246,543 + ABIE41_RS15825 0.85 +0.8
3,246,660 + ABIE41_RS15825 0.88 +0.5
3,246,660 + ABIE41_RS15825 0.88 -1.2
3,246,661 - ABIE41_RS15825 0.88 -0.1
3,246,693 + ABIE41_RS15825 0.89 +0.9
3,246,921 + -1.7
3,246,921 + -0.2
3,246,922 - -0.9
3,246,922 - +1.3
3,246,922 - -0.0
3,246,922 - +0.5
3,247,610 + ABIE41_RS15830 0.52 -3.7
3,247,652 + ABIE41_RS15830 0.56 +0.4

Or see this region's nucleotide sequence