Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12595

Experiment: L-Fucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS12590 and ABIE41_RS12595 are separated by 131 nucleotidesABIE41_RS12595 and ABIE41_RS12600 are separated by 108 nucleotides ABIE41_RS12590: ABIE41_RS12590 - UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase, at 2,578,943 to 2,580,373 _RS12590 ABIE41_RS12595: ABIE41_RS12595 - PatB family C-S lyase, at 2,580,505 to 2,581,689 _RS12595 ABIE41_RS12600: ABIE41_RS12600 - putative peptidoglycan glycosyltransferase FtsW, at 2,581,798 to 2,582,931 _RS12600 Position (kb) 2580 2581 2582Strain fitness (log2 ratio) -3 -2 -1 0 1at 2580.694 kb on + strand, within ABIE41_RS12595at 2580.700 kb on + strand, within ABIE41_RS12595at 2580.837 kb on + strand, within ABIE41_RS12595at 2580.837 kb on + strand, within ABIE41_RS12595at 2580.838 kb on - strand, within ABIE41_RS12595at 2580.838 kb on - strand, within ABIE41_RS12595at 2580.863 kb on + strand, within ABIE41_RS12595at 2580.864 kb on - strand, within ABIE41_RS12595at 2580.956 kb on - strand, within ABIE41_RS12595at 2581.358 kb on - strand, within ABIE41_RS12595at 2581.358 kb on - strand, within ABIE41_RS12595at 2581.358 kb on - strand, within ABIE41_RS12595at 2581.358 kb on - strand, within ABIE41_RS12595at 2581.399 kb on + strand, within ABIE41_RS12595at 2581.480 kb on + strand, within ABIE41_RS12595at 2581.481 kb on - strand, within ABIE41_RS12595at 2581.483 kb on - strand, within ABIE41_RS12595at 2581.687 kb on + strandat 2581.687 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
remove
2,580,694 + ABIE41_RS12595 0.16 -1.1
2,580,700 + ABIE41_RS12595 0.16 -1.1
2,580,837 + ABIE41_RS12595 0.28 -0.6
2,580,837 + ABIE41_RS12595 0.28 -1.4
2,580,838 - ABIE41_RS12595 0.28 -2.8
2,580,838 - ABIE41_RS12595 0.28 +0.1
2,580,863 + ABIE41_RS12595 0.30 -0.5
2,580,864 - ABIE41_RS12595 0.30 +0.9
2,580,956 - ABIE41_RS12595 0.38 -0.8
2,581,358 - ABIE41_RS12595 0.72 -1.6
2,581,358 - ABIE41_RS12595 0.72 +0.2
2,581,358 - ABIE41_RS12595 0.72 -0.7
2,581,358 - ABIE41_RS12595 0.72 -2.5
2,581,399 + ABIE41_RS12595 0.75 -1.1
2,581,480 + ABIE41_RS12595 0.82 +0.2
2,581,481 - ABIE41_RS12595 0.82 -1.6
2,581,483 - ABIE41_RS12595 0.83 -0.5
2,581,687 + +0.3
2,581,687 + -0.4

Or see this region's nucleotide sequence