Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29395

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29385 and ABID97_RS29390 are separated by 10 nucleotidesABID97_RS29390 and ABID97_RS29395 overlap by 1 nucleotidesABID97_RS29395 and ABID97_RS29400 are separated by 126 nucleotides ABID97_RS29385: ABID97_RS29385 - tripartite tricarboxylate transporter substrate binding protein, at 802,042 to 803,013 _RS29385 ABID97_RS29390: ABID97_RS29390 - amino acid synthesis family protein, at 803,024 to 803,602 _RS29390 ABID97_RS29395: ABID97_RS29395 - zinc-dependent alcohol dehydrogenase family protein, at 803,602 to 804,624 _RS29395 ABID97_RS29400: ABID97_RS29400 - acyl-CoA dehydrogenase family protein, at 804,751 to 805,986 _RS29400 Position (kb) 803 804 805Strain fitness (log2 ratio) -1 0 1at 803.258 kb on + strand, within ABID97_RS29390at 803.259 kb on - strand, within ABID97_RS29390at 803.427 kb on - strand, within ABID97_RS29390at 803.427 kb on - strand, within ABID97_RS29390at 803.441 kb on + strand, within ABID97_RS29390at 803.768 kb on - strand, within ABID97_RS29395at 803.768 kb on - strand, within ABID97_RS29395at 804.841 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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803,258 + ABID97_RS29390 0.40 +0.1
803,259 - ABID97_RS29390 0.41 -0.3
803,427 - ABID97_RS29390 0.70 -1.0
803,427 - ABID97_RS29390 0.70 -0.5
803,441 + ABID97_RS29390 0.72 +0.2
803,768 - ABID97_RS29395 0.16 +0.2
803,768 - ABID97_RS29395 0.16 +0.6
804,841 + +0.2

Or see this region's nucleotide sequence