Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19030

Experiment: Fumarate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS19025 and ABID97_RS19030 are separated by 87 nucleotidesABID97_RS19030 and ABID97_RS19035 are separated by 30 nucleotides ABID97_RS19025: ABID97_RS19025 - tripartite tricarboxylate transporter substrate binding protein, at 3,915,788 to 3,916,774 _RS19025 ABID97_RS19030: ABID97_RS19030 - tripartite tricarboxylate transporter substrate binding protein, at 3,916,862 to 3,917,860 _RS19030 ABID97_RS19035: ABID97_RS19035 - tripartite tricarboxylate transporter substrate binding protein, at 3,917,891 to 3,918,862 _RS19035 Position (kb) 3916 3917 3918Strain fitness (log2 ratio) -1 0 1at 3916.013 kb on + strand, within ABID97_RS19025at 3917.267 kb on - strand, within ABID97_RS19030at 3917.611 kb on - strand, within ABID97_RS19030at 3918.109 kb on - strand, within ABID97_RS19035at 3918.349 kb on + strand, within ABID97_RS19035at 3918.466 kb on - strand, within ABID97_RS19035at 3918.714 kb on + strand, within ABID97_RS19035at 3918.855 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
remove
3,916,013 + ABID97_RS19025 0.23 +0.8
3,917,267 - ABID97_RS19030 0.41 -0.4
3,917,611 - ABID97_RS19030 0.75 +0.1
3,918,109 - ABID97_RS19035 0.22 -0.5
3,918,349 + ABID97_RS19035 0.47 -0.4
3,918,466 - ABID97_RS19035 0.59 -0.1
3,918,714 + ABID97_RS19035 0.85 +0.5
3,918,855 + +0.2

Or see this region's nucleotide sequence