Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01680

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01670 and ABID97_RS01675 are separated by 57 nucleotidesABID97_RS01675 and ABID97_RS01680 are separated by 80 nucleotidesABID97_RS01680 and ABID97_RS01685 are separated by 7 nucleotides ABID97_RS01670: ABID97_RS01670 - DMT family transporter, at 327,334 to 328,350 _RS01670 ABID97_RS01675: ABID97_RS01675 - DeoR/GlpR family DNA-binding transcription regulator, at 328,408 to 329,172 _RS01675 ABID97_RS01680: ABID97_RS01680 - GDP-mannose pyrophosphatase, at 329,253 to 329,840 _RS01680 ABID97_RS01685: ABID97_RS01685 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 329,848 to 331,281 _RS01685 Position (kb) 329 330Strain fitness (log2 ratio) -2 -1 0 1 2at 329.240 kb on + strandat 329.310 kb on + strandat 329.382 kb on + strand, within ABID97_RS01680at 329.382 kb on + strand, within ABID97_RS01680at 329.661 kb on + strand, within ABID97_RS01680at 329.805 kb on + strandat 329.805 kb on + strandat 329.805 kb on + strandat 329.805 kb on + strandat 329.805 kb on + strandat 329.806 kb on - strandat 330.100 kb on + strand, within ABID97_RS01685at 330.100 kb on + strand, within ABID97_RS01685at 330.100 kb on + strand, within ABID97_RS01685at 330.130 kb on + strand, within ABID97_RS01685at 330.151 kb on + strand, within ABID97_RS01685at 330.151 kb on + strand, within ABID97_RS01685at 330.151 kb on + strand, within ABID97_RS01685at 330.196 kb on + strand, within ABID97_RS01685at 330.196 kb on + strand, within ABID97_RS01685at 330.196 kb on + strand, within ABID97_RS01685at 330.197 kb on - strand, within ABID97_RS01685at 330.197 kb on - strand, within ABID97_RS01685at 330.197 kb on - strand, within ABID97_RS01685at 330.197 kb on - strand, within ABID97_RS01685at 330.373 kb on + strand, within ABID97_RS01685at 330.373 kb on + strand, within ABID97_RS01685at 330.373 kb on + strand, within ABID97_RS01685at 330.467 kb on - strand, within ABID97_RS01685at 330.467 kb on - strand, within ABID97_RS01685at 330.634 kb on + strand, within ABID97_RS01685at 330.635 kb on - strand, within ABID97_RS01685at 330.635 kb on - strand, within ABID97_RS01685at 330.652 kb on + strand, within ABID97_RS01685at 330.652 kb on + strand, within ABID97_RS01685at 330.652 kb on + strand, within ABID97_RS01685at 330.652 kb on + strand, within ABID97_RS01685at 330.802 kb on + strand, within ABID97_RS01685at 330.802 kb on + strand, within ABID97_RS01685at 330.802 kb on + strand, within ABID97_RS01685at 330.802 kb on + strand, within ABID97_RS01685at 330.802 kb on + strand, within ABID97_RS01685at 330.802 kb on + strand, within ABID97_RS01685at 330.802 kb on + strand, within ABID97_RS01685at 330.803 kb on - strand, within ABID97_RS01685at 330.803 kb on - strand, within ABID97_RS01685at 330.803 kb on - strand, within ABID97_RS01685

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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329,240 + +0.4
329,310 + -0.4
329,382 + ABID97_RS01680 0.22 -0.3
329,382 + ABID97_RS01680 0.22 -0.3
329,661 + ABID97_RS01680 0.69 -2.2
329,805 + -0.2
329,805 + +0.3
329,805 + +0.5
329,805 + -0.1
329,805 + -0.4
329,806 - +0.8
330,100 + ABID97_RS01685 0.18 +0.3
330,100 + ABID97_RS01685 0.18 -1.0
330,100 + ABID97_RS01685 0.18 +0.7
330,130 + ABID97_RS01685 0.20 +0.2
330,151 + ABID97_RS01685 0.21 +0.2
330,151 + ABID97_RS01685 0.21 -0.6
330,151 + ABID97_RS01685 0.21 +0.1
330,196 + ABID97_RS01685 0.24 +0.4
330,196 + ABID97_RS01685 0.24 +0.6
330,196 + ABID97_RS01685 0.24 +0.8
330,197 - ABID97_RS01685 0.24 +0.1
330,197 - ABID97_RS01685 0.24 -0.0
330,197 - ABID97_RS01685 0.24 -0.2
330,197 - ABID97_RS01685 0.24 -0.2
330,373 + ABID97_RS01685 0.37 -0.5
330,373 + ABID97_RS01685 0.37 +0.4
330,373 + ABID97_RS01685 0.37 +0.3
330,467 - ABID97_RS01685 0.43 +0.7
330,467 - ABID97_RS01685 0.43 +0.3
330,634 + ABID97_RS01685 0.55 +0.2
330,635 - ABID97_RS01685 0.55 -0.1
330,635 - ABID97_RS01685 0.55 -0.2
330,652 + ABID97_RS01685 0.56 -0.3
330,652 + ABID97_RS01685 0.56 +1.7
330,652 + ABID97_RS01685 0.56 +0.5
330,652 + ABID97_RS01685 0.56 -0.1
330,802 + ABID97_RS01685 0.67 +2.1
330,802 + ABID97_RS01685 0.67 -0.3
330,802 + ABID97_RS01685 0.67 -0.2
330,802 + ABID97_RS01685 0.67 -0.4
330,802 + ABID97_RS01685 0.67 -0.2
330,802 + ABID97_RS01685 0.67 -0.1
330,802 + ABID97_RS01685 0.67 -0.2
330,803 - ABID97_RS01685 0.67 -0.0
330,803 - ABID97_RS01685 0.67 -0.1
330,803 - ABID97_RS01685 0.67 +0.3

Or see this region's nucleotide sequence